Mathematical modeling and analysis of in vitro actin filament dynamics and cell blebbing.
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[1] E. Sackmann,et al. On the organization of self-assembled actin networks in giant vesicles , 2003, The European physical journal. E, Soft matter.
[2] Joseph Fass,et al. Stochastic simulation of actin dynamics reveals the role of annealing and fragmentation. , 2008, Journal of theoretical biology.
[3] D. Purich,et al. Profilin Promotes Barbed-end Actin Filament Assembly without Lowering the Critical Concentration* , 1999, The Journal of Biological Chemistry.
[4] Cecie Starr,et al. Biology: The unity and diversity of life , 1978 .
[5] L A Selden,et al. Impact of profilin on actin-bound nucleotide exchange and actin polymerization dynamics. , 1999, Biochemistry.
[6] J. E. Estes,et al. Interdependence of profilin, cation, and nucleotide binding to vertebrate non-muscle actin. , 2000, Biochemistry.
[7] D. Gillespie. A General Method for Numerically Simulating the Stochastic Time Evolution of Coupled Chemical Reactions , 1976 .
[8] J. Dai,et al. Membrane tether formation from blebbing cells. , 1999, Biophysical journal.
[9] T. Pollard,et al. Interactions of ADF/cofilin, Arp2/3 complex, capping protein and profilin in remodeling of branched actin filament networks , 2000, Current Biology.
[10] L. Mahadevan,et al. Non-equilibration of hydrostatic pressure in blebbing cells , 2005, Nature.
[11] Timothy J. Mitchison,et al. Reassembly of contractile actin cortex in cell blebs , 2006, The Journal of cell biology.
[12] Andrew E. Pelling,et al. Moesin Controls Cortical Rigidity, Cell Rounding, and Spindle Morphogenesis during Mitosis , 2008, Current Biology.
[13] Y. Maéda,et al. Crowded surfaces change annealing dynamics of actin filaments. , 2007, Journal of molecular biology.
[14] J. Theriot,et al. Crawling toward a unified model of cell mobility: spatial and temporal regulation of actin dynamics. , 2004, Annual review of biochemistry.
[15] Udo Seifert,et al. Configurations of fluid membranes and vesicles , 1997 .
[16] J. Condeelis,et al. Cofilin takes the lead , 2005, Journal of Cell Science.
[17] A. Carlsson,et al. Model of reduction of actin polymerization forces by ATP hydrolysis , 2008, Physical biology.
[18] K C Holmes,et al. Refinement of the F-actin model against X-ray fiber diffraction data by the use of a directed mutation algorithm. , 1993, Journal of molecular biology.
[19] E. Andrianantoandro,et al. Kinetic mechanism of end-to-end annealing of actin filaments. , 2001, Journal of molecular biology.
[20] Ikuko Fujiwara,et al. Microscopic analysis of polymerization dynamics with individual actin filaments , 2002, Nature Cell Biology.
[21] F. Lafuma,et al. A biomimetic motility assay provides insight into the mechanism of actin-based motility , 2003, The Journal of cell biology.
[22] H. Othmer,et al. A stochastic analysis of first-order reaction networks , 2005, Bulletin of mathematical biology.
[23] T. L. Hill. Linear Aggregation Theory in Cell Biology , 1987, Springer Series in Molecular Biology.
[24] L Mahadevan,et al. Implications of a poroelastic cytoplasm for the dynamics of animal cell shape. , 2008, Seminars in cell & developmental biology.
[25] J A McCammon,et al. Annealing accounts for the length of actin filaments formed by spontaneous polymerization. , 1999, Biophysical journal.
[26] A. Wegner. Spontaneous fragmentation of actin filaments in physiological conditions , 1982, Nature.
[27] Laurent Blanchoin,et al. Stochastic severing of actin filaments by actin depolymerizing factor/cofilin controls the emergence of a steady dynamical regime. , 2008, Biophysical journal.
[28] L E Scriven,et al. Instability and dynamic pattern in cellular networks. , 1971, Journal of theoretical biology.
[29] J. Griffiths. The Theory of Stochastic Processes , 1967 .
[30] E. Yarmola,et al. Effects of Profilin and Thymosin β4 on the Critical Concentration of Actin Demonstrated in Vitro and in Cell Extracts with a Novel Direct Assay* , 2004, Journal of Biological Chemistry.
[31] Thomas D Pollard,et al. Real-time measurements of actin filament polymerization by total internal reflection fluorescence microscopy. , 2005, Biophysical journal.
[32] M. Bindschadler,et al. A mechanistic model of the actin cycle. , 2004, Biophysical journal.
[33] W. Witke. The role of profilin complexes in cell motility and other cellular processes. , 2004, Trends in cell biology.
[34] Fumio Oosawa,et al. Thermodynamics of the polymerization of protein , 1975 .
[35] D. Lauffenburger,et al. Cell Migration: A Physically Integrated Molecular Process , 1996, Cell.
[36] Qiang Du,et al. Simulating the deformation of vesicle membranes under elastic bending energy in three dimensions , 2006, J. Comput. Phys..
[37] E. Larquet,et al. How ATP Hydrolysis Controls Filament Assembly from Profilin-Actin , 2007, Journal of Biological Chemistry.
[38] Guillaume Charras,et al. A short history of blebbing , 2008, Journal of microscopy.
[39] G. Majno. Cells, tissues and disease , 1996 .
[40] E. Yarmola,et al. Profilin: emerging concepts and lingering misconceptions. , 2006, Trends in biochemical sciences.
[41] E. Korn,et al. The effects of Mg2+ at the high-affinity and low-affinity sites on the polymerization of actin and associated ATP hydrolysis. , 1986, The Journal of biological chemistry.
[42] J A McCammon,et al. Thermodynamics and kinetics of actin filament nucleation. , 2001, Biophysical journal.
[43] D. Boal. Mechanics of the Cell: Membranes , 2012 .
[44] F. Brochard-Wyart,et al. Tether extrusion from red blood cells: integral proteins unbinding from cytoskeleton. , 2007, Biophysical journal.
[45] H. Erickson,et al. Co-operativity in protein-protein association. The structure and stability of the actin filament. , 1989, Journal of molecular biology.
[46] J. Dai,et al. Modulation of membrane dynamics and cell motility by membrane tension. , 1996, Trends in cell biology.
[47] N. Kamiya. Cytoplasmic streaming in giant algal cells: A historical survey of experimental approaches , 1986, The botanical magazine = Shokubutsu-gaku-zasshi.
[48] Ikuko Fujiwara,et al. Polymerization kinetics of ADP- and ADP-Pi-actin determined by fluorescence microscopy , 2007, Proceedings of the National Academy of Sciences.
[49] D. Purich,et al. Force generation by cytoskeletal filament end-tracking proteins. , 2004, Biophysical journal.
[50] J. Howard,et al. Mechanics of Motor Proteins and the Cytoskeleton , 2001 .
[51] L Mahadevan,et al. A quantitative analysis of contractility in active cytoskeletal protein networks. , 2008, Biophysical journal.
[52] Jifeng Hu,et al. A Theoretical Approach to Actin Filament Dynamics , 2007 .
[53] T D Pollard,et al. Molecular mechanisms controlling actin filament dynamics in nonmuscle cells. , 2000, Annual review of biophysics and biomolecular structure.
[54] A. Kolomeisky,et al. ATP hydrolysis stimulates large length fluctuations in single actin filaments. , 2005, Biophysical journal.
[55] E. Moses,et al. Inter-filament attractions narrow the length distribution of actin filaments , 2004, cond-mat/0406303.
[56] J. Wehland,et al. A crucial role for profilin–actin in the intracellular motility of Listeria monocytogenes , 2003, EMBO reports.
[57] Tosio Kato. Perturbation theory for linear operators , 1966 .
[58] Marie-France Carlier,et al. Reconstitution of actin-based motility of Listeria and Shigella using pure proteins , 1999, Nature.
[59] J. Hagmann,et al. Differences in cortical actin structure and dynamics document that different types of blebs are formed by distinct mechanisms. , 2002, Experimental cell research.
[60] M. Kawamura,et al. A further study of electron microscopic particle length of F-actin polymerized in vitro. , 1972, Journal of biochemistry.
[61] Anya L. Goodman,et al. Coordinated Regulation of Actin Filament Turnover by a High-Molecular-Weight Srv2/CAP Complex, Cofilin, Profilin, and Aip1 , 2003, Current Biology.
[62] Dimitrios Vavylonis,et al. Actin polymerization kinetics, cap structure, and fluctuations. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[63] L Mahadevan,et al. Life and times of a cellular bleb. , 2008, Biophysical journal.
[64] T D Pollard,et al. Mechanical properties of actin filament networks depend on preparation, polymerization conditions, and storage of actin monomers. , 1998, Biophysical journal.
[65] H. Othmer,et al. A stochastic analysis of actin polymerization in the presence of twinfilin and gelsolin. , 2007, Journal of theoretical biology.
[66] Jesper Ferkinghoff-Borg,et al. Diffusion, fragmentation, and coagulation processes: analytical and numerical results. , 2005, Physical review. E, Statistical, nonlinear, and soft matter physics.
[67] Seifert,et al. Shape transformations of vesicles: Phase diagram for spontaneous- curvature and bilayer-coupling models. , 1991, Physical review. A, Atomic, molecular, and optical physics.
[68] T. Pollard,et al. Hydrolysis of ATP by polymerized actin depends on the bound divalent cation but not profilin. , 2002, Biochemistry.
[69] Guillaume Charras,et al. Blebs lead the way: how to migrate without lamellipodia , 2008, Nature Reviews Molecular Cell Biology.
[70] Marie-France Carlier,et al. The dynamics of actin-based motility depend on surface parameters , 2002, Nature.
[71] Marie-France Carlier,et al. Forces generated during actin-based propulsion: a direct measurement by micromanipulation. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[72] E. Yarmola,et al. Depolymerization of Actin Filaments by Profilin , 2003, Journal of Biological Chemistry.
[73] O. Fackler,et al. Cell motility through plasma membrane blebbing , 2008, The Journal of cell biology.
[74] C. Schutt,et al. A Cross-linked Profilin-Actin Heterodimer Interferes with Elongation at the Fast-growing End of F-actin* , 2002, The Journal of Biological Chemistry.
[75] Michel Bornens,et al. Cortical actomyosin breakage triggers shape oscillations in cells and cell fragments. , 2005, Biophysical journal.
[76] Samuel Karlin,et al. Many server queueing processes with Poisson input and exponential service times , 1958 .