Biological mechanisms, one molecule at a time.
暂无分享,去创建一个
[1] Th. Förster. Zwischenmolekulare Energiewanderung und Fluoreszenz , 1948 .
[2] R. Benesch,et al. Enzymatic removal of oxygen for polarography and related methods. , 1953, Science.
[3] B. Rotman,et al. Measurement of activity of single molecules of beta-D-galactosidase. , 1961, Proceedings of the National Academy of Sciences of the United States of America.
[4] S. Pestka. Studies on the formation of transfer ribonucleic acid-ribosome complexes. VI. Oligopeptide synthesis and translocation on ribosomes in the presence and absence of soluble transfer factors. , 1969, The Journal of biological chemistry.
[5] S. Pestka. Studies on the formation of transfer ribonucleic acid-ribosome complexes. IX. Effect of antibiotics on translocation and peptide bond formation. , 1970, Archives of biochemistry and biophysics.
[6] A. Ashkin. Acceleration and trapping of particles by radiation pressure , 1970 .
[7] S. Pestka. Studies on the formation of transfer ribonucleic acid-ribosome complexes. 8. Survey of the effect of antibiotics of N-acetyl-phenylalanyl-puromycin formation: possible mechanism of chloramphenicol action. , 1970, Archives of biochemistry and biophysics.
[8] A. Spirin,et al. Factor-free ("non-enzymic") and factor-dependent systems of translation of polyuridylic acid by Escherichia coli ribosomes. , 1976, Journal of molecular biology.
[9] T. Hirschfeld. Optical microscopic observation of single small molecules. , 1976, Applied optics.
[10] D. Axelrod. Cell-substrate contacts illuminated by total internal reflection fluorescence , 1981, The Journal of cell biology.
[11] K. Nierhaus,et al. Spontaneous, elongation factor G independent translocation of Escherichia coli ribosomes. , 1983, The Journal of biological chemistry.
[12] N. Thompson,et al. Total internal reflection fluorescence. , 1984, Annual review of biophysics and bioengineering.
[13] Gerber,et al. Atomic Force Microscope , 2020, Definitions.
[14] R. Keller,et al. Ultrasensitive laser-induced fluorescence detection in hydrodynamically focused flows , 1987 .
[15] R A Mathies,et al. Single-molecule fluorescence detection: autocorrelation criterion and experimental realization with phycoerythrin. , 1989, Proceedings of the National Academy of Sciences of the United States of America.
[16] W. Moerner,et al. Optical detection and spectroscopy of single molecules in a solid. , 1989, Physical review letters.
[17] Harry F. Noller,et al. Intermediate states in the movement of transfer RNA in the ribosome , 1989, Nature.
[18] R. Weiss,et al. Ribosome gymnastics—Degree of difficulty 9.5, style 10.0 , 1990, Cell.
[19] M. Orrit,et al. Single pentacene molecules detected by fluorescence excitation in a p-terphenyl crystal. , 1990, Physical review letters.
[20] J. Pawley,et al. Handbook of Biological Confocal Microscopy , 1990, Springer US.
[21] Rudolf Rigler,et al. Diffusion of single molecules through a Gaussian laser beam , 1993, Other Conferences.
[22] Robert J. Chichester,et al. Single Molecules Observed by Near-Field Scanning Optical Microscopy , 1993, Science.
[23] D E Smith,et al. Direct observation of tube-like motion of a single polymer chain. , 1994, Science.
[24] M. Rodnina,et al. Transient conformational states of aminoacyl-tRNA during ribosome binding catalyzed by elongation factor Tu. , 1994, Biochemistry.
[25] Xie,et al. Single molecule emission characteristics in near-field microscopy. , 1995, Physical review letters.
[26] Kiwamu Saito,et al. Imaging of single fluorescent molecules and individual ATP turnovers by single myosin molecules in aqueous solution , 1995, Nature.
[27] T M Jovin,et al. Microspectroscopic imaging tracks the intracellular processing of a signal transduction protein: fluorescent-labeled protein kinase C beta I. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[28] Louis E. Brus,et al. Imaging and Time-Resolved Spectroscopy of Single Molecules at an Interface , 1996, Science.
[29] D. F. Ogletree,et al. Probing the interaction between single molecules: fluorescence resonance energy transfer between a single donor and a single acceptor , 1996, Summaries of Papers Presented at the Quantum Electronics and Laser Science Conference.
[30] R. Brimacombe,et al. Visualization of elongation factor Tu on the Escherichia coli ribosome , 1997, Nature.
[31] T. Pape,et al. Complete kinetic mechanism of elongation factor Tu‐dependent binding of aminoacyl‐tRNA to the A site of the E.coli ribosome , 1998, The EMBO journal.
[32] H. Noller,et al. EF‐G‐catalyzed translocation of anticodon stem–loop analogs of transfer RNA in the ribosome , 1998, The EMBO journal.
[33] X. Zhuang,et al. Ligand-induced conformational changes observed in single RNA molecules. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[34] S. Weiss. Fluorescence spectroscopy of single biomolecules. , 1999, Science.
[35] Arthur Ashkin,et al. Optical Trapping and Manipulation of Neutral Particles Using Lasers , 1999 .
[36] Magnetic resonance of a single molecular spin , 1999 .
[37] Joachim Frank,et al. A ratchet-like inter-subunit reorganization of the ribosome during translocation , 2000, Nature.
[38] H Li,et al. Atomic force microscopy reveals the mechanical design of a modular protein. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[39] D. Ballou,et al. The use of protocatechuate dioxygenase for maintaining anaerobic conditions in biochemical experiments. , 2000, Analytical biochemistry.
[40] Alois Renn,et al. Direct observation of the triplet lifetime quenching of single dye molecules by molecular oxygen , 2001 .
[41] G. Haran,et al. Immobilization in Surface-Tethered Lipid Vesicles as a New Tool for Single Biomolecule Spectroscopy , 2001 .
[42] T. Ha,et al. Single-molecule fluorescence resonance energy transfer. , 2001, Methods.
[43] J. Liphardt,et al. Reversible Unfolding of Single RNA Molecules by Mechanical Force , 2001, Science.
[44] D. Axelrod. Total internal reflection fluorescence microscopy in cell biology. , 2003, Methods in enzymology.
[45] Joachim Frank,et al. Cryo‐EM reveals an active role for aminoacyl‐tRNA in the accommodation process , 2002, The EMBO journal.
[46] M. Heel,et al. Ribosome interactions of aminoacyl-tRNA and elongation factor Tu in the codon-recognition complex , 2002, Nature Structural Biology.
[47] I. Tinoco,et al. Equilibrium Information from Nonequilibrium Measurements in an Experimental Test of Jarzynski's Equality , 2002, Science.
[48] Nancy R. Forde,et al. Using mechanical force to probe the mechanism of pausing and arrest during continuous elongation by Escherichia coli RNA polymerase , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[49] Mark E. Welland,et al. Electronic spin detection in molecules using scanning-tunneling- microscopy-assisted electron-spin resonance , 2002 .
[50] F. Ritort,et al. A two-state kinetic model for the unfolding of single molecules by mechanical force , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[51] Taekjip Ha,et al. Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase , 2002, Nature.
[52] Ignacio Tinoco,et al. The effect of force on thermodynamics and kinetics of single molecule reactions. , 2002, Biophysical chemistry.
[53] A. Knight,et al. Visualizing single molecules inside living cells using total internal reflection fluorescence microscopy. , 2003, Methods.
[54] Carlos Bustamante,et al. Optical-trap force transducer that operates by direct measurement of light momentum. , 2003, Methods in enzymology.
[55] Scott M Stagg,et al. Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy , 2003, Nature Structural Biology.
[56] Michael D. Stone,et al. Chirality sensing by Escherichia coli topoisomerase IV and the mechanism of type II topoisomerases , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[57] S. Turner,et al. Zero-Mode Waveguides for Single-Molecule Analysis at High Concentrations , 2003, Science.
[58] Michael D. Stone,et al. Structural transitions and elasticity from torque measurements on DNA , 2003, Nature.
[59] Polly M Fordyce,et al. Simultaneous, coincident optical trapping and single-molecule fluorescence , 2004, Nature Methods.
[60] J. Puglisi,et al. tRNA selection and kinetic proofreading in translation , 2004, Nature Structural &Molecular Biology.
[61] Nancy R Forde,et al. Mechanical processes in biochemistry. , 2004, Annual review of biochemistry.
[62] Taekjip Ha,et al. Single-molecule three-color FRET. , 2004, Biophysical journal.
[63] Ignacio Tinoco,et al. Force as a useful variable in reactions: unfolding RNA. , 2004, Annual review of biophysics and biomolecular structure.
[64] Steven Chu,et al. tRNA dynamics on the ribosome during translation. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[65] J. Holton,et al. Structures of the Bacterial Ribosome at 3.5 Å Resolution , 2005, Science.
[66] C. Jarzynski,et al. Verification of the Crooks fluctuation theorem and recovery of RNA folding free energies , 2005, Nature.
[67] R. Kołos,et al. Optimal oxygen concentration for the detection of single indocarbocyanine molecules in a polymeric matrix , 2005 .
[68] Taekjip Ha,et al. Surfaces and orientations: much to FRET about? , 2004, Accounts of chemical research.
[69] Nam Ki Lee,et al. Alternating‐Laser Excitation of Single Molecules , 2005 .
[70] Helmut Grubmüller,et al. Detecting protein-induced folding of the U4 snRNA kink-turn by single-molecule multiparameter FRET measurements. , 2005, RNA.
[71] Hector H. Huang,et al. Force-dependent chemical kinetics of disulfide bond reduction observed with single-molecule techniques. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[72] X. Xie,et al. Probing Gene Expression in Live Cells, One Protein Molecule at a Time , 2006, Science.
[73] M. Rodnina,et al. The ribosome's response to codon-anticodon mismatches. , 2006, Biochimie.
[74] Ignacio Tinoco,et al. Probing the mechanical folding kinetics of TAR RNA by hopping, force-jump, and force-ramp methods. , 2006, Biophysical journal.
[75] Divya Sharma,et al. The hybrid state of tRNA binding is an authentic translation elongation intermediate , 2006, Nature Structural &Molecular Biology.
[76] M. Rodnina,et al. Mechanism of peptide bond formation on the ribosome , 2006, Quarterly Reviews of Biophysics.
[77] V. Sandoghdar,et al. Oxygen-dependent photochemistry of fluorescent dyes studied at the single molecule level , 2006 .
[78] Ignacio Tinoco,et al. Determination of thermodynamics and kinetics of RNA reactions by force , 2006, Quarterly Reviews of Biophysics.
[79] N. Friedman,et al. Stochastic protein expression in individual cells at the single molecule level , 2006, Nature.
[80] J. Puglisi,et al. Thiostrepton inhibition of tRNA delivery to the ribosome. , 2007, RNA.
[81] Harry F Noller,et al. Intersubunit movement is required for ribosomal translocation , 2007, Proceedings of the National Academy of Sciences.
[82] Julio M Fernandez,et al. Dwell-time distribution analysis of polyprotein unfolding using force-clamp spectroscopy. , 2007, Biophysical journal.
[83] F. Ritort,et al. Force unfolding kinetics of RNA using optical tweezers. II. Modeling experiments. , 2007, Biophysical journal.
[84] Wolfgang Wintermeyer,et al. How ribosomes make peptide bonds. , 2007, Trends in biochemical sciences.
[85] J. Puglisi,et al. The role of fluctuations in tRNA selection by the ribosome , 2007, Proceedings of the National Academy of Sciences.
[86] Ignacio Tinoco,et al. Force unfolding kinetics of RNA using optical tweezers. I. Effects of experimental variables on measured results. , 2007, Biophysical journal.
[87] J. Doudna,et al. Quantitative studies of ribosome conformational dynamics , 2007, Quarterly Reviews of Biophysics.
[88] Joachim Frank,et al. The process of mRNA–tRNA translocation , 2007, Proceedings of the National Academy of Sciences.
[89] Carlos Bustamante,et al. Backtracking determines the force sensitivity of RNAP II in a factor-dependent manner , 2007, Nature.
[90] Sotaro Uemura,et al. [Imaging and nano-manipulation of single biomolecules]. , 2007, Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme.
[91] Steven Chu,et al. Fluctuations of transfer RNAs between classical and hybrid states. , 2007, Biophysical journal.
[92] Takuya Terai,et al. Fluorescent probes for bioimaging applications. , 2008, Current opinion in chemical biology.
[93] Rahul Roy,et al. A practical guide to single-molecule FRET , 2008, Nature Methods.
[94] P. Schultz,et al. A general and efficient method for the site-specific dual-labeling of proteins for single molecule fluorescence resonance energy transfer. , 2008, Journal of the American Chemical Society.
[95] Carlos Bustamante,et al. In singulo biochemistry: when less is more. , 2008, Annual review of biochemistry.
[96] Peiqian Zhao,et al. Parallel confocal detection of single molecules in real time. , 2008, Optics letters.
[97] Colin Echeverría Aitken,et al. An oxygen scavenging system for improvement of dye stability in single-molecule fluorescence experiments. , 2008, Biophysical journal.
[98] Ignacio Tinoco,et al. Following translation by single ribosomes one codon at a time , 2008, Nature.
[99] Paul R. Selvin,et al. Single-molecule techniques : a laboratory manual , 2008 .
[100] Anthony J. Manzo,et al. Do-it-yourself guide: how to use the modern single-molecule toolkit , 2008, Nature Methods.
[101] H. Craighead,et al. Zero-mode waveguides: sub-wavelength nanostructures for single molecule studies at high concentrations. , 2008, Methods.
[102] Ignacio Tinoco,et al. How RNA unfolds and refolds. , 2008, Annual review of biochemistry.
[103] W. Greenleaf,et al. Single-molecule studies of RNA polymerase: motoring along. , 2008, Annual review of biochemistry.
[104] Joseph D. Puglisi,et al. Irreversible chemical steps control intersubunit dynamics during translation , 2008, Proceedings of the National Academy of Sciences.
[105] Taekjip Ha,et al. Spontaneous intersubunit rotation in single ribosomes. , 2008, Molecular cell.
[106] M. Moore,et al. Visualizing the splicing of single pre-mRNA molecules in whole cell extract. , 2007, RNA.
[107] Carlos Bustamante,et al. Recent advances in optical tweezers. , 2008, Annual review of biochemistry.
[108] I. Tinoco,et al. Simulation and analysis of single-ribosome translation , 2009, Physical biology.
[109] T. Leyh,et al. Natural amino acids do not require their native tRNAs for efficient selection by the ribosome , 2009, Nature chemical biology.
[110] Colin Echeverría Aitken,et al. GTP hydrolysis by IF2 guides progression of the ribosome into elongation. , 2009, Molecular cell.
[111] James B. Munro,et al. Mitigating unwanted photophysical processes for improved single-molecule fluorescence imaging. , 2009, Biophysical journal.
[112] Taekjip Ha,et al. Following movement of the L1 stalk between three functional states in single ribosomes , 2009, Proceedings of the National Academy of Sciences.
[113] David Rueda,et al. Single Molecule Analysis of Protein Free U2/U6 snRNAs , 2009, Nature Structural &Molecular Biology.
[114] Ruben L. Gonzalez,et al. Coupling of Ribosomal L1 Stalk and tRNA Dynamics during Translation Elongation , 2009 .
[115] Wei Zhang,et al. GTPase activation of elongation factor EF‐Tu by the ribosome during decoding , 2009, The EMBO journal.
[116] Sarah E. Walker,et al. Ribosomal translocation: one step closer to the molecular mechanism. , 2009, ACS chemical biology.
[117] Peter Hinterdorfer,et al. Handbook of single-molecule biophysics , 2009 .
[118] James B. Munro,et al. Spontaneous formation of the unlocked state of the ribosome is a multistep process , 2009, Proceedings of the National Academy of Sciences.
[119] S. Turner,et al. Real-Time DNA Sequencing from Single Polymerase Molecules , 2009, Science.
[120] J. Cate,et al. Structures of the Ribosome in Intermediate States of Ratcheting , 2009, Science.
[121] Jake M. Hofman,et al. Allosteric collaboration between elongation factor G and the ribosomal L1 stalk directs tRNA movements during translation , 2009, Proceedings of the National Academy of Sciences.
[122] Wolfgang Wintermeyer,et al. Recent mechanistic insights into eukaryotic ribosomes. , 2009, Current opinion in cell biology.
[123] Klaus Schulten,et al. Ribosome-induced changes in elongation factor Tu conformation control GTP hydrolysis , 2009, Proceedings of the National Academy of Sciences.
[124] H. Chapman,et al. X-ray imaging beyond the limits. , 2009, Nature materials.
[125] S. Blanchard. Single-molecule observations of ribosome function. , 2009, Current opinion in structural biology.
[126] Yong-Gui Gao,et al. The Crystal Structure of the Ribosome Bound to EF-Tu and Aminoacyl-tRNA , 2009, Science.
[127] Paul V. Ruijgrok,et al. Room-Temperature Detection of a Single Molecule’s Absorption by Photothermal Contrast , 2010, Science.
[128] Taekjip Ha,et al. Single-molecule four-color FRET. , 2010, Angewandte Chemie.
[129] Joseph D. Puglisi,et al. Following the intersubunit conformation of the ribosome during translation in real time , 2010, Nature Structural &Molecular Biology.
[130] Alois Renn,et al. Single-Molecule Sensitivity in Optical Absorption at Room Temperature , 2010 .
[131] Joachim Frank,et al. Structure and dynamics of a processive Brownian motor: the translating ribosome. , 2010, Annual review of biochemistry.
[132] James B. Munro,et al. Correlated conformational events in EF-G and the ribosome regulate translocation , 2010, Nature Structural &Molecular Biology.
[133] Soojin Lim,et al. NIR dyes for bioimaging applications. , 2010, Current opinion in chemical biology.
[134] Michael B. Feldman,et al. Conformational sampling of aminoacyl-tRNA during selection on the bacterial ribosome. , 2010, Journal of molecular biology.
[135] X. Zhuang,et al. Breaking the Diffraction Barrier: Super-Resolution Imaging of Cells , 2010, Cell.
[136] M. Yusupov,et al. Crystal Structure of the Eukaryotic Ribosome , 2010, Science.
[137] Tae-Hee Lee,et al. Codon-dependent tRNA fluctuations monitored with fluorescence polarization. , 2010, Biophysical journal.
[138] Wei Min,et al. Ground-State Depletion Microscopy: Detection Sensitivity of Single-Molecule Optical Absorption at Room Temperature , 2010 .
[139] Paul J. Choi,et al. Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells , 2010, Science.
[140] A. Kelley,et al. The Mechanism for Activation of GTP Hydrolysis on the Ribosome , 2010, Science.
[141] C. Guthrie,et al. Conformational dynamics of single pre-mRNA molecules during in vitro splicing , 2010, Nature Structural &Molecular Biology.
[142] Yuhong Wang,et al. Single-molecule study of viomycin's inhibition mechanism on ribosome translocation. , 2010, Biochemistry.
[143] Elizabeth A. Shank,et al. The folding cooperativity of a protein is controlled by its chain topology , 2010, Nature.
[144] James B. Munro,et al. A fast dynamic mode of the EF‐G‐bound ribosome , 2010, The EMBO journal.
[145] Colin Echeverría Aitken,et al. Real-time tRNA transit on single translating ribosomes at codon resolution , 2010, Nature.
[146] N. Tanner,et al. Visualizing DNA replication at the single-molecule level. , 2010, Methods in enzymology.
[147] Michael B. Feldman,et al. Aminoglycoside activity observed on single pre-translocation ribosome complexes. , 2010, Nature chemical biology.
[148] Joseph D Puglisi,et al. Single ribosome dynamics and the mechanism of translation. , 2010, Annual review of biophysics.
[149] S. Hell. Far-field optical nanoscopy , 2010 .
[150] T. Ha,et al. Force-fluorescence spectroscopy at the single-molecule level. , 2010, Methods in enzymology.
[151] Zygmunt Gryczynski,et al. Enhancement of single-molecule fluorescence signals by colloidal silver nanoparticles in studies of protein translation. , 2011, ACS nano.
[152] T. Ha,et al. Forcing a connection: Impacts of single‐molecule force spectroscopy on in vivo tension sensing , 2011, Biopolymers.
[153] Jonathan E. Bronson,et al. Transfer RNA-mediated regulation of ribosome dynamics during protein synthesis , 2011, Nature Structural &Molecular Biology.
[154] Ignacio Tinoco,et al. The Ribosome Uses Two Active Mechanisms to Unwind mRNA During Translation , 2011, Nature.
[155] Bin Wang,et al. A microfluidic approach for investigating the temperature dependence of biomolecular activity with single-molecule resolution. , 2011, Lab on a chip.
[156] A. Revyakin,et al. Single-molecule studies using magnetic traps. , 2012, Cold Spring Harbor protocols.
[157] C. Joo,et al. Single-molecule FRET with total internal reflection microscopy. , 2012, Cold Spring Harbor protocols.