Tuning λ6- 85 towards downhill folding at its melting temperature
暂无分享,去创建一个
Martin Gruebele | M. Gruebele | F. Liu | Feng Liu | Feng Liu
[1] R. L. Baldwin,et al. The sequential unfolding of ribonuclease A: detection of a fast initial phase in the kinetics of unfolding. , 1971, Proceedings of the National Academy of Sciences of the United States of America.
[2] A. Ikai,et al. Kinetic Evidence for Incorrectly Folded Intermediate States in the Refolding of Denatured Proteins , 1971, Nature.
[3] R. Sauer,et al. Effect of single amino acid replacements on the thermal stability of the NH2-terminal domain of phage lambda repressor. , 1984, Proceedings of the National Academy of Sciences of the United States of America.
[4] R. Zwanzig,et al. Diffusion in a rough potential. , 1988, Proceedings of the National Academy of Sciences of the United States of America.
[5] E. Henry,et al. [8] Singular value decomposition: Application to analysis of experimental data , 1992 .
[6] P. Hänggi,et al. Activated barrier crossing : applications in physics, chemistry and biology , 1993 .
[7] B. Berne. Theoretical and Numerical Methods in Rate Theory , 1993 .
[8] M. Kataoka,et al. Cold denaturation of the molten globule states of apomyoglobin and a profile for protein folding. , 1994, Biochemistry.
[9] T. Oas,et al. Submillisecond folding of monomeric lambda repressor. , 1995, Proceedings of the National Academy of Sciences of the United States of America.
[10] J. Onuchic,et al. Funnels, pathways, and the energy landscape of protein folding: A synthesis , 1994, Proteins.
[11] J. Hofrichter,et al. Diffusion-limited contact formation in unfolded cytochrome c: estimating the maximum rate of protein folding. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[12] M. Gruebele,et al. A single‐sweep, nanosecond time resolution laser temperature‐jump apparatus , 1996 .
[13] T. Schindler,et al. Diffusion control in an elementary protein folding reaction. , 1997, Proceedings of the National Academy of Sciences of the United States of America.
[14] Terrence G. Oas,et al. The energy landscape of a fast-folding protein mapped by Ala→Gly Substitutions , 1997, Nature Structural Biology.
[15] S. Ghaemmaghami,et al. Folding kinetics of a fluorescent variant of monomeric lambda repressor. , 1998, Biochemistry.
[17] M. Gruebele,et al. Observation of strange kinetics in protein folding. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[18] M. J. Parker,et al. The cooperativity of burst phase reactions explored. , 1999, Journal of molecular biology.
[19] K. Kuwajima,et al. Fast folding of Escherichia coli cyclophilin A: a hypothesis of a unique hydrophobic core with a phenylalanine cluster. , 2000, Journal of molecular biology.
[20] M. Gruebele,et al. Submicrosecond real-time fluorescence sampling: application to protein folding. , 2000, Journal of photochemistry and photobiology. B, Biology.
[21] D. Leeson,et al. Protein folding and unfolding on a complex energy landscape. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[22] Shoji Takada,et al. Microscopic theory of protein folding rates. I. Fine structure of the free energy profile and folding routes from a variational approach , 2000, cond-mat/0008454.
[23] Jason C. Crane,et al. The folding mechanism of a -sheet: the WW domain1 , 2001 .
[24] D. Thirumalai,et al. Is there a unique melting temperature for two‐state proteins? , 2002, J. Comput. Chem..
[25] A. Roitberg,et al. Smaller and faster: the 20-residue Trp-cage protein folds in 4 micros. , 2002, Journal of the American Chemical Society.
[26] V. Muñoz,et al. Experimental Identification of Downhill Protein Folding , 2002, Science.
[27] V. Muñoz. Thermodynamics and kinetics of downhill protein folding investigated with a simple statistical mechanical model , 2002 .
[28] M. Gruebele. Protein folding: the free energy surface. , 2002, Current opinion in structural biology.
[29] Valerie Daggett,et al. Ultrafast folding of α3D: A de novo designed three-helix bundle protein , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[30] J. Hofrichter,et al. Experimental tests of villin subdomain folding simulations. , 2003, Journal of molecular biology.
[31] S. Hagen. Exponential decay kinetics in “downhill” protein folding , 2002, Proteins.
[32] Martin Gruebele,et al. Folding at the speed limit , 2003, Nature.
[33] A. Cavalli,et al. Fast protein folding on downhill energy landscape , 2003, Protein science : a publication of the Protein Society.
[34] Dmitri K. Klimov,et al. Caging helps proteins fold , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[35] Jeffery G. Saven,et al. Guiding the search for a protein's maximum rate of folding , 2004 .
[36] M. Gruebele,et al. Heterogeneous folding of the trpzip hairpin: full atom simulation and experiment. , 2004, Journal of molecular biology.
[37] Martin Gruebele,et al. Rate−Temperature Relationships in λ-Repressor Fragment λ6-85 Folding† , 2004 .
[38] M. Gruebele,et al. Detection-dependent kinetics as a probe of folding landscape microstructure. , 2004, Journal of the American Chemical Society.
[39] M. Gruebele,et al. Folding λ-repressor at its speed limit , 2004 .
[40] Zaida Ann Luthey-Schulten,et al. Variations in the fast folding rates of the λ-repressor: A hybrid molecular dynamics study , 2004 .
[41] T. Oas,et al. Fast and faster: A designed variant of the B‐domain of protein A folds in 3 μsec , 2004 .
[42] J. Hofrichter,et al. The protein folding 'speed limit'. , 2004, Current opinion in structural biology.
[43] Martin Gruebele,et al. Engineering a β-sheet protein toward the folding speed limit , 2005 .
[44] Athi N. Naganathan,et al. Robustness of downhill folding: guidelines for the analysis of equilibrium folding experiments on small proteins. , 2005, Biochemistry.
[45] M. Gruebele,et al. Kinetics are probe-dependent during downhill folding of an engineered λ6–85 protein , 2005 .
[46] M. Gruebele. Downhill protein folding: evolution meets physics. , 2005, Comptes rendus biologies.
[47] Andrei Tokmakoff,et al. Conformational changes during the nanosecond-to-millisecond unfolding of ubiquitin. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[48] Gerhard Hummer,et al. Position-dependent diffusion coefficients and free energies from Bayesian analysis of equilibrium and replica molecular dynamics simulations , 2005 .
[49] Yan Zhang,et al. Structure-function-folding relationship in a WW domain. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[50] Martin Gruebele,et al. Low barrier kinetics: Dependence on observables and free energy surface , 2006, J. Comput. Chem..
[51] F. Gai,et al. Nanosecond Folding Dynamics of a Three-Stranded β-Sheet , 2006 .
[52] Martin Gruebele,et al. Solvent‐tuning the collapse and helix formation time scales of λ6‐85* , 2006 .