Generalized method to design phase masks for 3D super-resolution microscopy.

Point spread function (PSF) engineering by phase modulation is a novel approach to three-dimensional (3D) super-resolution microscopy, with different point spread functions being proposed for specific applications. It is often not easy to achieve the desired shape of engineered point spread functions because it is challenging to determine the correct phase mask. Additionally, a phase mask can either encode 3D space information or additional time information, but not both simultaneously. A robust algorithm for recovering a phase mask to generate arbitrary point spread functions is needed. In this work, a generalized phase mask design method is introduced by performing an optimization. A stochastic gradient descent algorithm and a Gauss-Newton algorithm are developed and compared for their ability to recover the phase masks for previously reported point spread functions. The new Gauss-Newton algorithm converges to a minimum at much higher speeds. This algorithm is used to design a novel stretching-lobe phase mask to encode temporal and 3D spatial information simultaneously. The stretching-lobe phase mask and other masks are fabricated in-house for proof-of-concept using multi-level light lithography and an optimized commercially sourced stretching-lobe phase mask (PM) is validated experimentally to encode 3D spatial and temporal information. The algorithms' generalizability is further demonstrated by generating a phase mask that comprises four different letters at different depths.

[1]  Matthew D Lew,et al.  Corkscrew point spread function for far-field three-dimensional nanoscale localization of pointlike objects. , 2011, Optics letters.

[2]  Nicholas A Moringo,et al.  Single Particle Tracking: From Theory to Biophysical Applications. , 2017, Chemical reviews.

[3]  Laura Waller,et al.  3d Computer Generated Holography by Nonconvex Optimization , 2017 .

[4]  Y. Shechtman,et al.  Three-Dimensional Localization of Single Molecules for Super-Resolution Imaging and Single-Particle Tracking. , 2017, Chemical reviews.

[5]  Takanori Senoh,et al.  Image Size Scalable Full-parallax Coloured Three-dimensional Video by Electronic Holography , 2014, Scientific reports.

[6]  W. Webb,et al.  Precise nanometer localization analysis for individual fluorescent probes. , 2002, Biophysical journal.

[7]  Vilma Jimenez Sabinina,et al.  Optimal 3D single-molecule localization in real time using experimental point spread functions , 2018, Nature Methods.

[8]  A. Kildishev,et al.  Broadband Light Bending with Plasmonic Nanoantennas , 2012, Science.

[9]  M. Madou,et al.  One-step maskless grayscale lithography for the fabrication of 3-dimensional structures in SU-8 , 2011 .

[10]  Shu Jia,et al.  Isotropic 3D Super-resolution Imaging with a Self-bending Point Spread Function , 2013, CLEO 2013.

[11]  Matthew D. Lew,et al.  Three-dimensional localization precision of the double-helix point spread function versus astigmatism and biplane. , 2010, Applied physics letters.

[12]  Tomoyoshi Shimobaba,et al.  Interactive Holographic Display Based on Finger Gestures , 2018, Scientific Reports.

[13]  Lei Zhu,et al.  Faster STORM using compressed sensing , 2012, Nature Methods.

[14]  Sean Quirin,et al.  Photon efficient double-helix PSF microscopy with application to 3D photo-activation localization imaging , 2011, Biomedical optics express.

[15]  Jingjuan Zhang,et al.  Phase-retrieval algorithms applied in a 4-f system for optical image encryption: a comparison , 2005, SPIE/COS Photonics Asia.

[16]  James R. Fienup,et al.  Phase-retrieval stagnation problems and solutions , 1986 .

[17]  Matthew D. Lew,et al.  Minimizing Structural Bias in Single-Molecule Super-Resolution Microscopy , 2018, Scientific Reports.

[18]  Jacob T. Robinson,et al.  Integrated light-sheet illumination using metallic slit microlenses. , 2018, Optics express.

[19]  Adam S. Backer,et al.  Optimal point spread function design for 3D imaging. , 2014, Physical review letters.

[20]  Matthew D. Lew,et al.  Correcting field-dependent aberrations with nanoscale accuracy in three-dimensional single-molecule localization microscopy. , 2015, Optica.

[21]  Léon Bottou,et al.  Large-Scale Machine Learning with Stochastic Gradient Descent , 2010, COMPSTAT.

[22]  Petar N Petrov,et al.  Measurement-based estimation of global pupil functions in 3D localization microscopy. , 2017, Optics express.

[23]  Adam S. Backer,et al.  Extending Single-Molecule Microscopy Using Optical Fourier Processing , 2014, The journal of physical chemistry. B.

[24]  W. Cathey,et al.  Extended depth of field through wave-front coding. , 1995, Applied optics.

[25]  Bo Shuang,et al.  Generalized recovery algorithm for 3D super-resolution microscopy using rotating point spread functions , 2016, Scientific Reports.

[26]  Samuel J. Lord,et al.  Three-dimensional, single-molecule fluorescence imaging beyond the diffraction limit by using a double-helix point spread function , 2009, Proceedings of the National Academy of Sciences.

[27]  Nicholas A Moringo,et al.  Enhancing Analytical Separations Using Super-Resolution Microscopy. , 2018, Annual review of physical chemistry.

[28]  Jacob T. Robinson,et al.  Super-Temporal-Resolved Microscopy Reveals Multistep Desorption Kinetics of α-Lactalbumin from Nylon. , 2018, Langmuir.

[29]  Lucien E. Weiss,et al.  Precise Three-Dimensional Scan-Free Multiple-Particle Tracking over Large Axial Ranges with Tetrapod Point Spread Functions , 2015, Nano letters.

[30]  Ashok Veeraraghavan,et al.  Single-frame 3D fluorescence microscopy with ultraminiature lensless FlatScope , 2017, Science Advances.

[31]  Nicholas A Moringo,et al.  Super Temporal-Resolved Microscopy (STReM). , 2016, The journal of physical chemistry letters.

[32]  Bahram Javidi,et al.  Extension of depth of field using amplitude and phase modulation of the pupil function. , 2008, Optics letters.

[33]  Michael A Thompson,et al.  Three-dimensional tracking of single mRNA particles in Saccharomyces cerevisiae using a double-helix point spread function , 2010, Proceedings of the National Academy of Sciences.

[34]  Heinz H. Bauschke,et al.  Phase retrieval, error reduction algorithm, and Fienup variants: a view from convex optimization. , 2002, Journal of the Optical Society of America. A, Optics, image science, and vision.

[35]  Andrew J. Wilson,et al.  Visualizing and Calculating Tip-Substrate Distance in Nanoscale Scanning Electrochemical Microscopy Using 3-Dimensional Super-Resolution Optical Imaging. , 2017, Analytical chemistry.

[36]  Stephen J. Wright,et al.  Hogwild: A Lock-Free Approach to Parallelizing Stochastic Gradient Descent , 2011, NIPS.

[37]  Sean Quirin,et al.  Super-resolution photon-efficient imaging by nanometric double-helix point spread function localization of emitters (SPINDLE). , 2012, Optics express.

[38]  Quan Wang,et al.  Single-molecule spectroscopy and imaging over the decades. , 2015, Faraday discussions.

[39]  Jerry Chao,et al.  Investigation of the numerics of point spread function integration in single molecule localization. , 2015, Optics express.

[40]  Matthew D Lew,et al.  Simultaneous, accurate measurement of the 3D position and orientation of single molecules , 2012, Proceedings of the National Academy of Sciences.

[41]  Matthew D Lew,et al.  In vivo three-dimensional superresolution fluorescence tracking using a double-helix point spread function , 2010, BiOS.

[42]  Rafael Piestun,et al.  High-efficiency rotating point spread functions. , 2008, Optics express.

[43]  Xiaowei Zhuang,et al.  Analyzing Single Molecule Localization Microscopy Data Using Cubic Splines , 2016 .

[44]  N. Yu,et al.  Light Propagation with Phase Discontinuities: Generalized Laws of Reflection and Refraction , 2011, Science.