Lentibacillus populi sp. nov., a moderately halophilic, endophytic bacterium isolated from a poplar tree, and emended description of the genus Lentibacillus.

A Gram-staining-positive, moderately halophilic, aerobic, endospore-forming, rod-shaped bacterial strain, designated WD4L-1T was isolated from surface-sterilized stem tissue of a poplar tree planted in the Wudalianchi National Geopark of Heilongjiang province, PR China. This novel isolate grew in the presence of 0-15 % (w/v) NaCl, at pH 6.0-9.0 and 15-50 °C; optimum growth was observed with 7-8 % (w/v) NaCl, at pH 7.0 and 30 °C. The 16S rRNA gene sequence analysis indicated that the strain WD4L-1T belonged to the genus Lentibacillus, and was most closely related to Lentibacillus garicola SL-MJ1T with a sequence similarity of 96.1 %. The DNA G+C content of strain WD4L-1T was determined to be 36.9 mol%. The respiratory quinone was identified as menaquinone-7 (MK-7) and the major lipids were diphosphatidylglycerol and phosphatidylglycerol and one unidentified phospholipid. The major fatty acids of strain WD4L-1T were anteiso-C15 : 0, iso-C15 : 0 and anteiso-C17 : 0. The results of the physiological and biochemical tests and the minor differences in the fatty acid profiles allowed a clear phenotypic differentiation of strain WD4L-1T from the closely related Lentibacillus garicola JCM 30131T. Thus, strain WD4L-1T represents a novel species of the genus Lentibacillus, for which the name Lentibacillus populi sp. nov. is proposed. The type strain is WD4L-1T (=CGMCC 1.15454T=DSM 101738T). An emended description of the genus Lentibacillus is also provided.

[1]  Xuming Wang,et al.  Paenibacillus radicis sp. nov., an endophytic bacterium isolated from maize root. , 2016, International journal of systematic and evolutionary microbiology.

[2]  Dongmei Liu,et al.  Bacillus cavernae sp. nov. isolated from cave soil. , 2016, International journal of systematic and evolutionary microbiology.

[3]  Yanwei Wang,et al.  Lentibacillus amyloliquefaciens sp. nov., a halophilic bacterium isolated from saline sediment sample , 2016, Antonie van Leeuwenhoek.

[4]  C. Jeon,et al.  Lentibacillus garicola sp. nov., isolated from myeolchi-aekjeot, a Korean fermented anchovy sauce , 2015, Antonie van Leeuwenhoek.

[5]  Koichiro Tamura,et al.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. , 2013, Molecular biology and evolution.

[6]  J. Chun,et al.  Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. , 2012, International journal of systematic and evolutionary microbiology.

[7]  S. Tanasupawat,et al.  Identification of moderately halophilic bacteria from Thai fermented fish ( pla-ra ) and proposal of Virgibacillus siamensis sp. nov. , 2010, The Journal of general and applied microbiology.

[8]  A. Ventosa,et al.  Lentibacillus persicus sp. nov., a moderately halophilic species isolated from a saline lake. , 2010, International journal of systematic and evolutionary microbiology.

[9]  M. Jung,et al.  Lentibacillus jeotgali sp. nov., a halophilic bacterium isolated from traditional Korean fermented seafood. , 2010, International journal of systematic and evolutionary microbiology.

[10]  P. de Vos,et al.  Proposed minimal standards for describing new taxa of aerobic, endospore-forming bacteria. , 2009, International journal of systematic and evolutionary microbiology.

[11]  T. Beppu,et al.  Filimonas lacunae gen. nov., sp. nov., a member of the phylum Bacteroidetes isolated from fresh water. , 2009, International journal of systematic and evolutionary microbiology.

[12]  Wenjun Li,et al.  Lentibacillus salis sp. nov., a moderately halophilic bacterium isolated from a salt lake. , 2008, International journal of systematic and evolutionary microbiology.

[13]  Yanhe Ma,et al.  Lentibacillus halodurans sp. nov., a moderately halophilic bacterium isolated from a salt lake in Xin-Jiang, China. , 2007, International journal of systematic and evolutionary microbiology.

[14]  S. Tanasupawat,et al.  Oceanobacillus kapialis sp. nov., from fermented shrimp paste in Thailand. , 2007, International journal of systematic and evolutionary microbiology.

[15]  S. Tanasupawat,et al.  Lentibacillus halophilus sp. nov., from fish sauce in Thailand. , 2006, International journal of systematic and evolutionary microbiology.

[16]  C. Jeon,et al.  Lentibacillus lacisalsi sp. nov., a moderately halophilic bacterium isolated from a saline lake in China. , 2005, International journal of systematic and evolutionary microbiology.

[17]  C. Jeon,et al.  Lentibacillus salarius sp. nov., isolated from saline sediment in China, and emended description of the genus Lentibacillus. , 2005, International journal of systematic and evolutionary microbiology.

[18]  J. Yoon,et al.  Lentibacillus salicampi gen. nov., sp. nov., a moderately halophilic bacterium isolated from a salt field in Korea. , 2002, International journal of systematic and evolutionary microbiology.

[19]  J. Thompson,et al.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. , 1997, Nucleic acids research.

[20]  Erko Stackebrandt,et al.  Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology , 1994 .

[21]  M. Nei,et al.  Theoretical foundation of the minimum-evolution method of phylogenetic inference. , 1993, Molecular biology and evolution.

[22]  Andrey Rzhetsky,et al.  Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference , 1992, Journal of Molecular Evolution.

[23]  N. Saitou,et al.  The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.

[24]  D. Minnikin,et al.  AN INTEGRATED PROCEDURE FOR THE EXTRACTION OF BACTERIAL ISOPRENOID QUINONES AND POLAR LIPIDS , 1984 .

[25]  M. Collins,et al.  Lipids in the Classification and Identification of Coryneform Bacteria Containing Peptidoglycans Based on 2, 4‐diaminobutyric Acid , 1980 .

[26]  P. Doty,et al.  Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. , 1962, Journal of molecular biology.

[27]  J. Marmur A procedure for the isolation of deoxyribonucleic acid from micro-organisms , 1961 .

[28]  W. J. Dyer,et al.  A rapid method of total lipid extraction and purification. , 1959, Canadian journal of biochemistry and physiology.

[29]  W. Ludwig,et al.  Notes on the characterization of prokaryote strains for taxonomic purposes. , 2010, International journal of systematic and evolutionary microbiology.

[30]  T. Oh,et al.  Lentibacillus salinarum sp. nov., isolated from a marine solar saltern in Korea. , 2008, International journal of systematic and evolutionary microbiology.

[31]  W. Visessanguan,et al.  Isolation of Lentibacillus salicampi strains and Lentibacillus juripiscarius sp. nov. from fish sauce in Thailand. , 2005, International journal of systematic and evolutionary microbiology.

[32]  J. Felsenstein Evolutionary trees from DNA sequences: A maximum likelihood approach , 2005, Journal of Molecular Evolution.

[33]  D. Lane 16S/23S rRNA sequencing , 1991 .

[34]  C. Wu Analysis of menaquinone compound in microbial cells by HPLC , 1989 .

[35]  K. Komagata,et al.  4 Lipid and Cell-Wall Analysis in Bacterial Systematics , 1988 .

[36]  Jeffrey H. Miller Experiments in molecular genetics , 1972 .

[37]  A. Mishkin,et al.  SEPARATION OF CARBOHYDRATES ON BORATE-IMPREGNATED SILICA GEL G PLATES. , 1965, Journal of chromatography.

[38]  G. Delory A sodium carbonate-bicarbonate buffer for alkaline phosphatases. , 1945, The Biochemical journal.