Studies of the ligand binding reaction of adipocyte lipid binding protein using the fluorescent probe 1, 8-anilinonaphthalene-8-sulfonate.

The fluorescent probe anilinonaphthalene-8-sulfonate binds to adipocyte lipid binding protein at a site that competes with normal physiological ligands, such as fatty acids. Binding to the protein is accompanied by a relatively large increase in fluorescent intensity. To correlate the major change in optical properties and to determine the mechanism of competitive inhibition with fatty acids, the crystal structure of the protein with the bound fluorophore has been determined. In addition, the thermodynamic contributions to the binding reaction have been studied by titration calorimetry. Because the binding site is in a relatively internal position, kinetic studies have also been carried out to determine k(on). The results indicate that binding is not accompanied by any major conformational change. However, the negatively charged sulfonate moiety is not positioned the same as the carboxylate of fatty acid ligands as determined in previous studies. Nonetheless, the binding reaction is still driven by enthalpic effects. As judged by the crystallographic structure, a significant amount of the surface of the fluorophore is no longer exposed to water in the bound state.

[1]  M. Billeter,et al.  MOLMOL: a program for display and analysis of macromolecular structures. , 1996, Journal of molecular graphics.

[2]  A. Brunger Crystallographic refinement by simulated annealing , 1988 .

[3]  A. Brünger Crystallographic refinement by simulated annealing. Application to a 2.8 A resolution structure of aspartate aminotransferase. , 1988, Journal of molecular biology.

[4]  J. Thornton,et al.  Satisfying hydrogen bonding potential in proteins. , 1994, Journal of molecular biology.

[5]  A. Brunger Free R value: a novel statistical quantity for assessing the accuracy of crystal structures. , 1992 .

[6]  D. Cistola,et al.  Fatty acid interactions with a helix-less variant of intestinal fatty acid-binding protein. , 1996, Biochemistry.

[7]  M. Karplus,et al.  Crystallographic R Factor Refinement by Molecular Dynamics , 1987, Science.

[8]  Sung-Hou Kim,et al.  Sparse matrix sampling: a screening method for crystallization of proteins , 1991 .

[9]  A. Brünger Free R value: a novel statistical quantity for assessing the accuracy of crystal structures , 1992, Nature.

[10]  H Nakatani,et al.  Test reactions for a stopped-flow apparatus. Reduction of 2,6-dichlorophenolindophenol and potassium ferricyanide by L-ascorbic acid. , 1978, Analytical biochemistry.

[11]  D. Bernlohr,et al.  A simple assay for intracellular lipid-binding proteins using displacement of 1-anilinonaphthalene 8-sulfonic acid. , 1996, Analytical biochemistry.

[12]  C Frieden,et al.  New PC versions of the kinetic-simulation and fitting programs, KINSIM and FITSIM. , 1997, Trends in biochemical sciences.

[13]  L. Banaszak,et al.  Adipocyte lipid-binding protein complexed with arachidonic acid. Titration calorimetry and X-ray crystallographic studies. , 1994, The Journal of biological chemistry.

[14]  L. Banaszak,et al.  X-ray crystallographic structures of adipocyte lipid-binding protein complexed with palmitate and hexadecanesulfonic acid. Properties of cavity binding sites. , 1994, Biochemistry.

[15]  G J Kleywegt,et al.  Detection, delineation, measurement and display of cavities in macromolecular structures. , 1994, Acta crystallographica. Section D, Biological crystallography.

[16]  E. Kurian,et al.  Characterization of the sources of protein-ligand affinity: 1-sulfonato-8-(1')anilinonaphthalene binding to intestinal fatty acid binding protein. , 1996, Biophysical journal.

[17]  T. A. Jones,et al.  Lipid-binding proteins: a family of fatty acid and retinoid transport proteins. , 1994, Advances in protein chemistry.

[18]  K. Constantine,et al.  Backbone and side chain dynamics of uncomplexed human adipocyte and muscle fatty acid-binding proteins. , 1998, Biochemistry.

[19]  A. Tulinsky,et al.  Interaction of alpha-chymotrypsin with the fluorescent probe 1-anilinonaphthalene-8-sulfonate in solution. , 1979, Biochemistry.

[20]  J. Ory,et al.  Biochemical and Crystallographic Analyses of a Portal Mutant of the Adipocyte Lipid-binding Protein* , 1997, The Journal of Biological Chemistry.

[21]  C. Carter Protein crystallization using incomplete factorial experiments. , 1979, The Journal of biological chemistry.

[22]  Z. Xu,et al.  Expression, purification, and crystallization of the adipocyte lipid binding protein. , 1991, The Journal of biological chemistry.

[23]  H. Edelsbrunner,et al.  Anatomy of protein pockets and cavities: Measurement of binding site geometry and implications for ligand design , 1998, Protein science : a publication of the Protein Society.

[24]  A T Brünger,et al.  Protein hydration observed by X-ray diffraction. Solvation properties of penicillopepsin and neuraminidase crystal structures. , 1994, Journal of molecular biology.

[25]  M. Distefano,et al.  Structural characterization of two synthetic catalysts based on adipocyte lipid-binding protein. , 1998, Protein engineering.

[26]  D. Bernlohr,et al.  Surface properties of adipocyte lipid‐binding protein: Response to lipid binding, and comparison with homologous proteins , 1998, Proteins.

[27]  Leonard J. BanaszaM Adipocyte Lipid-binding Protein Complexed with Arachidonic Acid , 1994 .

[28]  M. Hodsdon,et al.  Discrete backbone disorder in the nuclear magnetic resonance structure of apo intestinal fatty acid-binding protein: implications for the mechanism of ligand entry. , 1997, Biochemistry.