Biomarkers of aging and lung function in the normative aging study

Elderly individuals who are never smokers but have the same height and chronological age can have substantial differences in lung function. The underlying biological mechanisms are unclear. To evaluate the associations of different biomarkers of aging (BoA) and lung function, we performed a repeated-measures analysis in the Normative Aging Study using linear mixed-effect models. We generated GrimAgeAccel, PhenoAgeAccel, extrinsic and intrinsic epigenetic age acceleration using a publically available online calculator. We calculated Zhang’s DNAmRiskScore based on 10 CpGs. We measured telomere length (TL) and mitochondrial DNA copy number (mtDNA-CN) using quantitative real-time polymerase chain reaction. A pulmonary function test was performed measuring forced expiratory volume in 1 second / forced vital capacity (FEV1/FVC), FEV1, and maximum mid-expiratory flow (MMEF). Epigenetic-based BoA were associated with lower lung function. For example, a one-year increase in GrimAgeAccel was associated with a 13.64 mL [95% confidence interval (CI), 5.11 to 22.16] decline in FEV1; a 0.2 increase in Zhang’s DNAmRiskScore was associated with a 0.009 L/s (0.005 to 0.013) reduction in MMEF. No association was found between TL/mtDNA-CN and lung function. Overall, this paper shows that epigenetics might be a potential mechanism underlying pulmonary dysfunction in the elderly.

[1]  J. Schwartz,et al.  Associations of annual ambient PM2.5 components with DNAm PhenoAge acceleration in elderly men: The Normative Aging Study. , 2019, Environmental pollution.

[2]  T. Dwyer,et al.  Telomere length and lung function in a population‐based cohort of children and mid‐life adults , 2019, Pediatric pulmonology.

[3]  M. Milá,et al.  Fragile X‐associated tremor/ataxia syndrome: Regional decrease of mitochondrial DNA copy number relates to clinical manifestations , 2019, Genes, brain, and behavior.

[4]  Jonathan A. Heiss,et al.  Improved filtering of DNA methylation microarray data by detection p values and its impact on downstream analyses , 2019, Clinical Epigenetics.

[5]  Alex P. Reiner,et al.  DNA methylation GrimAge strongly predicts lifespan and healthspan , 2019, Aging.

[6]  Richard T. Barfield,et al.  Metastable DNA methylation sites associated with longitudinal lung function decline and aging in humans: an epigenome-wide study in the NAS and KORA cohorts , 2018, Epigenetics.

[7]  S. Horvath,et al.  DNA methylation-based biomarkers and the epigenetic clock theory of ageing , 2018, Nature Reviews Genetics.

[8]  M. Levine,et al.  An epigenetic biomarker of aging for lifespan and healthspan , 2018, bioRxiv.

[9]  S. Bojesen,et al.  AHRR hypomethylation, lung function, lung function decline and respiratory symptoms , 2018, European Respiratory Journal.

[10]  E. Jaul,et al.  Age-Related Diseases and Clinical and Public Health Implications for the 85 Years Old and Over Population , 2017, Front. Public Health.

[11]  Man Hung,et al.  Interpretation of correlations in clinical research , 2017, Postgraduate medicine.

[12]  V. Backer,et al.  Lung function discordance in monozygotic twins and associated differences in blood DNA methylation , 2017, Clinical Epigenetics.

[13]  Jonathan A. Heiss,et al.  DNA methylation signatures in peripheral blood strongly predict all-cause mortality , 2017, Nature Communications.

[14]  M. Levine,et al.  Epigenetic clock analysis of diet, exercise, education, and lifestyle factors , 2017, Aging.

[15]  A. Just,et al.  Differential DNA methylation and PM2.5 species in a 450K epigenome-wide association study , 2017, Epigenetics.

[16]  N. Timpson,et al.  AHRR (cg05575921) hypomethylation marks smoking behaviour, morbidity and mortality , 2017, Thorax.

[17]  Jack A. Taylor,et al.  RELIC: a novel dye-bias correction method for Illumina Methylation BeadChip , 2017, BMC Genomics.

[18]  J. Kaprio,et al.  Genetic and Environmental Effects on Telomere Length and Lung Function: A Twin Study , 2016, The journals of gerontology. Series A, Biological sciences and medical sciences.

[19]  E. Colicino,et al.  Telomere Length, Long-Term Black Carbon Exposure, and Cognitive Function in a Cohort of Older Men: The VA Normative Aging Study , 2016, Environmental Health Perspectives.

[20]  H. Brenner,et al.  Epigenetic age acceleration predicts cancer, cardiovascular, and all-cause mortality in a German case cohort , 2016, Clinical Epigenetics.

[21]  P. Vokonas,et al.  Traffic-Related Air Pollution, Blood Pressure, and Adaptive Response of Mitochondrial Abundance , 2016, Circulation.

[22]  S. Horvath,et al.  Increased epigenetic age and granulocyte counts in the blood of Parkinson's disease patients , 2015, Aging.

[23]  M. Levine,et al.  Epigenetic age of the pre-frontal cortex is associated with neuritic plaques, amyloid load, and Alzheimer’s disease related cognitive functioning , 2015, Aging.

[24]  Yung-Che Chen,et al.  Leukocyte Mitochondrial DNA Copy Number Is Associated with Chronic Obstructive Pulmonary Disease , 2015, PloS one.

[25]  M. Levine,et al.  DNA methylation age of blood predicts future onset of lung cancer in the women's health initiative , 2015, Aging.

[26]  Steve Horvath,et al.  The epigenetic clock is correlated with physical and cognitive fitness in the Lothian Birth Cohort 1936 , 2015, International journal of epidemiology.

[27]  S Jay Olshansky,et al.  Heterogeneity in healthy aging. , 2014, The journals of gerontology. Series A, Biological sciences and medical sciences.

[28]  S. Horvath DNA methylation age of human tissues and cell types , 2013, Genome Biology.

[29]  T. Ideker,et al.  Genome-wide methylation profiles reveal quantitative views of human aging rates. , 2013, Molecular cell.

[30]  J. Connett,et al.  Spirometric predictors of lung function decline and mortality in early chronic obstructive pulmonary disease. , 2012, American journal of respiratory and critical care medicine.

[31]  Devin C. Koestler,et al.  DNA methylation arrays as surrogate measures of cell mixture distribution , 2012, BMC Bioinformatics.

[32]  P. Vokonas,et al.  Gene promoter methylation is associated with lung function in the elderly: The normative aging study , 2012, Epigenetics.

[33]  M. Kivimaki,et al.  Association of lung function with physical, mental and cognitive function in early old age , 2011, AGE.

[34]  P. Vokonas,et al.  Annual Ambient Black Carbon Associated with Shorter Telomeres in Elderly Men: Veterans Affairs Normative Aging Study , 2010, Environmental health perspectives.

[35]  Brian T. Lee,et al.  Forced vital capacity paired with Framingham Risk Score for prediction of all-cause mortality , 2010, European Respiratory Journal.

[36]  E. García-Arumí,et al.  Quantification of mitochondrial DNA copy number: pre-analytical factors. , 2009, Mitochondrion (Amsterdam. Print).

[37]  J. Parr,et al.  Liver mtDNA content increases during development: a comparison of methods and the importance of age- and tissue-specific controls for the diagnosis of mtDNA depletion. , 2007, Mitochondrion.

[38]  D. Sinclair,et al.  The role of nuclear architecture in genomic instability and ageing , 2007, Nature Reviews Molecular Cell Biology.

[39]  M. Blasco Telomeres and human disease: ageing, cancer and beyond , 2005, Nature Reviews Genetics.

[40]  J. Hankinson,et al.  Standardisation of spirometry , 2005, European Respiratory Journal.

[41]  F. García-Río,et al.  Spirometric reference equations for European females and males aged 65–85 yrs , 2004, European Respiratory Journal.

[42]  H. Christensen,et al.  Association of Pulmonary Function with Cognitive Performance in Early, Middle and Late Adulthood , 2004, Gerontology.

[43]  D. Mannino,et al.  Lung function and mortality in the United States: data from the First National Health and Nutrition Examination Survey follow up study , 2003, Thorax.

[44]  R. Cawthon Telomere measurement by quantitative PCR. , 2002, Nucleic acids research.

[45]  L. Chambless,et al.  Lower pulmonary function and cerebral subclinical abnormalities detected by MRI: the Atherosclerosis Risk in Communities study. , 1999, Chest.

[46]  L. Neas,et al.  Pulmonary function levels as predictors of mortality in a national sample of US adults. , 1998, American journal of epidemiology.

[47]  B. Bell,et al.  The Veterans Administration longitudinal study of healthy aging. , 1966, The Gerontologist.

[48]  A. Newman,et al.  Telomere length in epidemiology: a biomarker of aging, age-related disease, both, or neither? , 2013, Epidemiologic reviews.

[49]  J. Enríquez,et al.  Tissue-specific differences in mitochondrial activity and biogenesis. , 2011, Mitochondrion.

[50]  C. Greider Telomere length regulation. , 1996, Annual review of biochemistry.

[51]  Standardization of spirometry--1987 update. Statement of the American Thoracic Society. , 1987, The American review of respiratory disease.