Dynamic and Coordinated Epigenetic Regulation of Developmental Transitions in the Cardiac Lineage
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Alexander R. Pico | Genevieve D. Erwin | K. Pollard | B. Bruneau | Huiming Ding | D. Srivastava | S. Levine | R. Truty | A. Holloway | Avanti Shrikumar | L. Boyer | J. Capra | S. Kattman | G. Keller | Fugen Li | J. A. Wamstad | J. Alexander | K. Eilertson | J. Wylie | Steven J. Kattman | Jeffrey M. Alexander | A. K. Holloway | A. Pico | J. M. Alexander
[1] R. B. Redmon,et al. Identity , 2021, Notre Dame J. Formal Log..
[2] T. Furey. ChIP – seq and beyond : new and improved methodologies to detect and characterize protein – DNA interactions , 2012 .
[3] Xiaoxia Qi,et al. Heart repair by reprogramming non-myocytes with cardiac transcription factors , 2012, Nature.
[4] B. Williams,et al. Dynamic Transformations of Genome-wide Epigenetic Marking and Transcriptional Control Establish T Cell Identity , 2012, Cell.
[5] Ching-Pin Chang,et al. Epigenetics and cardiovascular development. , 2012, Annual review of physiology.
[6] P. Cahan,et al. Polycomb Repressive Complex 2 Regulates Normal Development of the Mouse Heart , 2012, Circulation research.
[7] J. Seidman,et al. Epigenetic repression of cardiac progenitor gene expression by Ezh2 is required for postnatal cardiac homeostasis , 2011, Nature Genetics.
[8] Li Qian,et al. In vivo reprogramming of murine cardiac fibroblasts into induced cardiomyocytes , 2011, Nature.
[9] A. Visel,et al. Large-Scale Discovery of Enhancers from Human Heart Tissue , 2011, Nature Genetics.
[10] Cole Trapnell,et al. Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses. , 2011, Genes & development.
[11] P. Scacheri,et al. Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions. , 2011, Genome research.
[12] Aibin He,et al. Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart , 2011, Proceedings of the National Academy of Sciences.
[13] Timothy J. Durham,et al. "Systematic" , 1966, Comput. J..
[14] Ryan A. Flynn,et al. A unique chromatin signature uncovers early developmental enhancers in humans , 2011, Nature.
[15] Gordon Keller,et al. Stage-specific optimization of activin/nodal and BMP signaling promotes cardiac differentiation of mouse and human pluripotent stem cell lines. , 2011, Cell stem cell.
[16] J. Rinn,et al. Non-coding RNAs as regulators of embryogenesis , 2011, Nature Reviews Genetics.
[17] E. Davidson. Emerging properties of animal gene regulatory networks , 2010, Nature.
[18] F. Conlon,et al. Myocardial lineage development. , 2010, Circulation research.
[19] R. Young,et al. Histone H3K27ac separates active from poised enhancers and predicts developmental state , 2010, Proceedings of the National Academy of Sciences.
[20] A. Weinmann,et al. Jmjd3 and UTX play a demethylase-independent role in chromatin remodeling to regulate T-box family member-dependent gene expression. , 2010, Molecular cell.
[21] Clifford A. Meyer,et al. Differentiation-specific histone modifications reveal dynamic chromatin interactions and partners for the intestinal transcription factor CDX2. , 2010, Developmental cell.
[22] T. Derrien,et al. Long Noncoding RNAs with Enhancer-like Function in Human Cells , 2010, Cell.
[23] A. Visel,et al. ChIP-Seq identification of weakly conserved heart enhancers , 2010, Nature Genetics.
[24] V. Vedantham,et al. Direct Reprogramming of Fibroblasts into Functional Cardiomyocytes by Defined Factors , 2010, Cell.
[25] Emily H Turner,et al. Exome sequencing identifies MLL2 mutations as a cause of Kabuki syndrome , 2010, Nature Genetics.
[26] E. Zackai,et al. Further evidence for the possible role of MEIS2 in the development of cleft palate and cardiac septum , 2010, American journal of medical genetics. Part A.
[27] Cory Y. McLean,et al. GREAT improves functional interpretation of cis-regulatory regions , 2010, Nature Biotechnology.
[28] G. Kreiman,et al. Widespread transcription at neuronal activity-regulated enhancers , 2010, Nature.
[29] Christopher B. Burge,et al. c-Myc Regulates Transcriptional Pause Release , 2010, Cell.
[30] W. Huber,et al. which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets , 2011 .
[31] Clifford A. Meyer,et al. Nucleosome Dynamics Define Transcriptional Enhancers , 2010, Nature Genetics.
[32] Yuriy L Orlov,et al. The nuclear receptor Nr5a2 can replace Oct4 in the reprogramming of murine somatic cells to pluripotent cells. , 2010, Cell stem cell.
[33] Christian Gieger,et al. Genome-wide association study of PR interval , 2010, Nature Genetics.
[34] Y. Kaneda,et al. A histone H3 lysine 36 trimethyltransferase links Nkx2-5 to Wolf–Hirschhorn syndrome , 2009, Nature.
[35] Michael D. Wilson,et al. ChIP-seq: using high-throughput sequencing to discover protein-DNA interactions. , 2009, Methods.
[36] Benoit G. Bruneau,et al. Directed transdifferentiation of mouse mesoderm to heart tissue by defined factors , 2009, Nature.
[37] Nathaniel D. Heintzman,et al. Histone modifications at human enhancers reflect global cell-type-specific gene expression , 2009, Nature.
[38] Dustin E. Schones,et al. Chromatin signatures in multipotent human hematopoietic stem cells indicate the fate of bivalent genes during differentiation. , 2009, Cell stem cell.
[39] David A. Nix,et al. Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks , 2008, BMC Bioinformatics.
[40] Brad T. Sherman,et al. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists , 2008, Nucleic acids research.
[41] Albert C. Huang,et al. Coordinated but physically separable interaction with H3K27-demethylase and H3K4-methyltransferase activities are required for T-box protein-mediated activation of developmental gene expression. , 2008, Genes & development.
[42] K. Stankunas,et al. Pbx/Meis Deficiencies Demonstrate Multigenetic Origins of Congenital Heart Disease , 2008, Circulation research.
[43] Megan F. Cole,et al. Connecting microRNA Genes to the Core Transcriptional Regulatory Circuitry of Embryonic Stem Cells , 2008, Cell.
[44] P. Dejong,et al. Marking Embryonic Stem Cells with a 2A Self-Cleaving Peptide: A NKX2-5 Emerald GFP BAC Reporter , 2008, PloS one.
[45] Benjamin J Bondow,et al. Loss of both GATA4 and GATA6 blocks cardiac myocyte differentiation and results in acardia in mice. , 2008, Developmental biology.
[46] Gordon Keller,et al. Differentiation of Embryonic Stem Cells to Clinically Relevant Populations: Lessons from Embryonic Development , 2008, Cell.
[47] B. Bruneau. The developmental genetics of congenital heart disease , 2008, Nature.
[48] T. Mikkelsen,et al. Genome-wide maps of chromatin state in pluripotent and lineage-committed cells , 2007, Nature.
[49] R. Young,et al. A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells , 2007, Cell.
[50] Dustin E. Schones,et al. High-Resolution Profiling of Histone Methylations in the Human Genome , 2007, Cell.
[51] Nathaniel D. Heintzman,et al. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome , 2007, Nature Genetics.
[52] E. Creemers,et al. Myocardin is a direct transcriptional target of Mef2, Tead and Foxo proteins during cardiovascular development , 2006, Development.
[53] D. Srivastava. Making or Breaking the Heart: From Lineage Determination to Morphogenesis , 2006, Cell.
[54] Richard A Young,et al. Chromatin immunoprecipitation and microarray-based analysis of protein location , 2006, Nature Protocols.
[55] Megan F. Cole,et al. Control of Developmental Regulators by Polycomb in Human Embryonic Stem Cells , 2006, Cell.
[56] X. Chen,et al. The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells , 2006, Nature Genetics.
[57] J. Kawai,et al. A genome-wide and nonredundant mouse transcription factor database. , 2004, Biochemical and biophysical research communications.
[58] Jonathan C. Cohen,et al. GATA4 mutations cause human congenital heart defects and reveal an interaction with TBX5 , 2003, Nature.
[59] Aibin He,et al. Regulation of GATA4 transcriptional activity in cardiovascular development and disease. , 2012, Current topics in developmental biology.
[60] B. Bernstein,et al. Charting histone modifications and the functional organization of mammalian genomes , 2011, Nature Reviews Genetics.
[61] Brad T. Sherman,et al. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources , 2008, Nature Protocols.
[62] Sandrine Dudoit,et al. Multiple Testing Procedures: the multtest Package and Applications to Genomics , 2005 .