Logomaker: beautiful sequence logos in Python
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[1] Alexandre V. Morozov,et al. Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE , 2006, ISMB.
[2] Mark Gerstein,et al. GENCODE reference annotation for the human and mouse genomes , 2018, Nucleic Acids Res..
[3] Daniel Jones,et al. Measuring cis-regulatory energetics in living cells using allelic manifolds , 2018, bioRxiv.
[4] Avanti Shrikumar,et al. Learning Important Features Through Propagating Activation Differences , 2017, ICML.
[5] Helen M. Berman,et al. Structure of the CAP-DNA Complex at 2.5 Å Resolution: A Complete Picture of the Protein-DNA Interface , 1996 .
[6] J. Kinney,et al. Quantitative Activity Profile and Context Dependence of All Human 5' Splice Sites. , 2018, Molecular cell.
[7] David G. Knowles,et al. Predicting Splicing from Primary Sequence with Deep Learning , 2019, Cell.
[8] M. Cyert,et al. Quantitative mapping of protein-peptide affinity landscapes using spectrally encoded beads , 2018, bioRxiv.
[9] J. Kinney,et al. Using deep sequencing to characterize the biophysical mechanism of a transcriptional regulatory sequence , 2010, Proceedings of the National Academy of Sciences.
[10] Michael J. Sweredoski,et al. Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria , 2018, Proceedings of the National Academy of Sciences.
[11] E. Birney,et al. Pfam: the protein families database , 2013, Nucleic Acids Res..
[12] T. D. Schneider,et al. Sequence logos: a new way to display consensus sequences. , 1990, Nucleic acids research.
[13] Uri Keich,et al. High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast , 2013, Genome research.
[14] Quantitative mapping of protein-peptide affinity landscapes using spectrally encoded beads , 2018 .
[15] David M. McCandlish,et al. Annual Review of Genomics and Human Genetics Massively Parallel Assays and Quantitative Sequence – Function Relationships , 2019 .
[16] Helen M. Berman,et al. Structure of the CAP-DNA complex at 2.5 angstroms resolution: a complete picture of the protein-DNA interface. , 1997, Journal of molecular biology.
[17] Omar Wagih,et al. ggseqlogo: a versatile R package for drawing sequence logos , 2017, Bioinform..
[18] Rob Phillips,et al. Mapping DNA sequence to transcription factor binding energy in vivo , 2018, bioRxiv.
[19] B. Stillman,et al. The origin recognition complex interacts with a bipartite DNA binding site within yeast replicators. , 1995, Proceedings of the National Academy of Sciences of the United States of America.