Disulfide driven folding for a conditionally disordered protein
暂无分享,去创建一个
Salvador Ventura | Pau Bernadó | Rita Grandori | Francesc Canals | Jordi Pujols | Alicia Roque | Carlo Santambrogio | P. Bernadó | S. Ventura | R. Grandori | O. Millet | F. Canals | J. Bech-Serra | H. Fraga | Jordi Pujols | Marcos Gil-García | A. Roque | G. Bernardo-Seisdedos | C. Santambrogio | Oscar Millet | Marcos Gil-Garcia | Hugo Fraga | Ganeko Bernardo-Seisdedos | Joan-Josep Bech-Serra | Marcos Gil-Garcia | Ó. Millet
[1] Lisa J. Lapidus,et al. Fast kinetics and mechanisms in protein folding. , 2000, Annual review of biophysics and biomolecular structure.
[2] R. Nussinov,et al. Induced Fit, Conformational Selection and Independent Dynamic Segments: an Extended View of Binding Events Opinion , 2022 .
[3] I. Bertini,et al. A Structural-Dynamical Characterization of Human Cox17* , 2008, Journal of Biological Chemistry.
[4] L Serrano,et al. Favourable native-like helical local interactions can accelerate protein folding. , 1997, Folding & design.
[5] C. Mueller-Dieckmann,et al. Upgraded ESRF BM29 beamline for SAXS on macromolecules in solution , 2013, Journal of synchrotron radiation.
[6] C. Dobson,et al. Acceleration of the folding of acylphosphatase by stabilization of local secondary structure , 1999, Nature Structural Biology.
[7] C. Kozany,et al. A Disulfide Relay System in the Intermembrane Space of Mitochondria that Mediates Protein Import , 2005, Cell.
[8] R. A. Goldbeck,et al. Multiple pathways on a protein-folding energy landscape: kinetic evidence. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[9] Vladimir N. Uversky,et al. Conditionally and transiently disordered proteins: awakening cryptic disorder to regulate protein function. , 2014, Chemical reviews.
[10] I. Kaltashov,et al. Mass spectrometry‐based methods to study protein architecture and dynamics , 2013, Protein science : a publication of the Protein Society.
[11] F. Avilés,et al. Folding of small disulfide-rich proteins: clarifying the puzzle. , 2006, Trends in biochemical sciences.
[12] L. Banci,et al. Visualization of redox-controlled protein fold in living cells. , 2013, Chemistry & biology.
[13] I. Bertini,et al. Folding studies of Cox17 reveal an important interplay of cysteine oxidation and copper binding. , 2005, Structure.
[14] Christopher M Dobson,et al. Principles of protein folding, misfolding and aggregation. , 2004, Seminars in cell & developmental biology.
[15] Silvio C. E. Tosatto,et al. ESpritz: accurate and fast prediction of protein disorder , 2012, Bioinform..
[16] F. Goñi,et al. Structure and dynamics of membrane proteins as studied by infrared spectroscopy. , 1999, Progress in biophysics and molecular biology.
[17] David S Wishart,et al. NMR: prediction of protein flexibility , 2006, Nature Protocols.
[18] C. Remacle,et al. Knock-down of the COX3 and COX17 gene expression of cytochrome c oxidase in the unicellular green alga Chlamydomonas reinhardtii , 2010, Plant Molecular Biology.
[19] T. Pawson,et al. Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation. , 1994, Biochemistry.
[20] A. Szabó,et al. Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 1. Theory and range of validity , 1982 .
[21] J. Herrmann,et al. Mia40 is a trans-site receptor that drives protein import into the mitochondrial intermembrane space by hydrophobic substrate binding , 2016, eLife.
[22] Dana Reichmann,et al. The roles of conditional disorder in redox proteins. , 2013, Current opinion in structural biology.
[23] B. Trout,et al. Mechanisms of protein stabilization and prevention of protein aggregation by glycerol. , 2009, Biochemistry.
[24] C. Anfinsen. Principles that govern the folding of protein chains. , 1973, Science.
[25] L. Kay,et al. Probing the free energy landscapes of ALS disease mutants of SOD1 by NMR spectroscopy , 2016, Proceedings of the National Academy of Sciences.
[26] Maxim V. Petoukhov,et al. New developments in the ATSAS program package for small-angle scattering data analysis , 2012, Journal of applied crystallography.
[27] Pau Bernadó,et al. A self-consistent description of the conformational behavior of chemically denatured proteins from NMR and small angle scattering. , 2009, Biophysical journal.
[28] F. Schmid,et al. Mia40 targets cysteines in a hydrophobic environment to direct oxidative protein folding in the mitochondria , 2014, Nature Communications.
[29] T. Oas,et al. Conformational selection or induced fit: A flux description of reaction mechanism , 2009, Proceedings of the National Academy of Sciences.
[30] O. Millet,et al. Carbohydrate affinity for the glucose-galactose binding protein is regulated by allosteric domain motions. , 2012, Journal of the American Chemical Society.
[31] M. Gruebele,et al. Fast protein folding kinetics , 2014, Quarterly Reviews of Biophysics.
[32] S. Grzesiek,et al. NMRPipe: A multidimensional spectral processing system based on UNIX pipes , 1995, Journal of biomolecular NMR.
[33] Zheng Rong Yang,et al. RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins , 2005, Bioinform..
[34] Sheila S Jaswal,et al. Biological insights from hydrogen exchange mass spectrometry. , 2013, Biochimica et biophysica acta.
[35] I. Bertini,et al. Molecular chaperone function of Mia40 triggers consecutive induced folding steps of the substrate in mitochondrial protein import , 2010, Proceedings of the National Academy of Sciences.
[36] C. Sanders,et al. Solution NMR of membrane proteins: practice and challenges , 2006, Magnetic resonance in chemistry : MRC.
[37] T. Creighton,et al. Dissecting the disulphide-coupled folding pathway of bovine pancreatic trypsin inhibitor. Forming the first disulphide bonds in analogues of the reduced protein. , 1993, Journal of molecular biology.
[38] Marcel Deponte,et al. Disulphide bond formation in the intermembrane space of mitochondria. , 2009, Journal of biochemistry.
[39] P. Romero,et al. Sequence complexity of disordered protein , 2001, Proteins.
[40] A. Szabó,et al. Model-free approach to the interpretation of nuclear magnetic resonance relaxation in macromolecules. 2. Analysis of experimental results , 1982 .
[41] Zsuzsanna Dosztányi,et al. IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content , 2005, Bioinform..
[42] Frederic Rousseau,et al. How evolutionary pressure against protein aggregation shaped chaperone specificity. , 2006, Journal of molecular biology.
[43] S. Ventura,et al. The Mitochondrial Intermembrane Space Oxireductase Mia40 Funnels the Oxidative Folding Pathway of the Cytochrome c Oxidase Assembly Protein Cox19* , 2014, The Journal of Biological Chemistry.
[44] T E Creighton. The protein folding problem. , 1988, Science.
[45] Satoshi Takahashi,et al. Conformational landscape of cytochrome c folding studied by microsecond-resolved small-angle x-ray scattering , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[46] I. Bertini,et al. MIA40 is an oxidoreductase that catalyzes oxidative protein folding in mitochondria , 2009, Nature Structural &Molecular Biology.
[47] Ken A Dill,et al. Fast protein folding kinetics , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[48] Roland L. Dunbrack,et al. PONDR-FIT: a meta-predictor of intrinsically disordered amino acids. , 2010, Biochimica et biophysica acta.
[49] Jaime Prilusky,et al. FoldIndex copyright: a simple tool to predict whether a given protein sequence is intrinsically unfolded , 2005, Bioinform..
[50] J. Riemer,et al. Mitochondrial disulfide bond formation is driven by intersubunit electron transfer in Erv1 and proofread by glutathione. , 2010, Molecular cell.
[51] S. Oeljeklaus,et al. Cox17 Protein Is an Auxiliary Factor Involved in the Control of the Mitochondrial Contact Site and Cristae Organizing System* , 2015, The Journal of Biological Chemistry.
[52] Functional Role of Two Interhelical Disulfide Bonds in Human Cox17 Protein from a Structural Perspective* , 2011, The Journal of Biological Chemistry.
[53] R. Dyer,et al. Fast events in protein folding: the time evolution of primary processes. , 1998, Annual review of physical chemistry.
[54] S. Ventura,et al. Oxidative Folding in the Mitochondrial Intermembrane Space in Human Health and Disease , 2013, International journal of molecular sciences.
[55] C. Tanford. Protein denaturation. , 1968, Advances in protein chemistry.
[56] Dmitri I Svergun,et al. Impact and progress in small and wide angle X-ray scattering (SAXS and WAXS). , 2013, Current opinion in structural biology.
[57] J. Beckmann,et al. FoldIndex©: a simple tool to predict whether a given protein sequence is intrinsically unfolded , 2005 .
[58] I. Bertini,et al. High‐Resolution Characterization of Intrinsic Disorder in Proteins: Expanding the Suite of 13C‐Detected NMR Spectroscopy Experiments to Determine Key Observables , 2011 .
[59] A. Klibanov,et al. Structure, thermostability, and conformational flexibility of hen egg-white lysozyme dissolved in glycerol. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[60] Ricardo Graña-Montes,et al. Association between foldability and aggregation propensity in small disulfide-rich proteins. , 2014, Antioxidants & redox signaling.
[61] R. Grandori,et al. Charge-surface correlation in electrospray ionization of folded and unfolded proteins. , 2011, Analytical chemistry.
[62] V. Uversky,et al. Why are “natively unfolded” proteins unstructured under physiologic conditions? , 2000, Proteins.
[63] Dmitri I. Svergun,et al. PRIMUS: a Windows PC-based system for small-angle scattering data analysis , 2003 .