Comparative proteomic analysis of three major extracellular vesicle classes secreted from human primary and metastatic colorectal cancer cells: Exosomes, microparticles, and shed midbody remnants.
暂无分享,去创建一个
Maoshan Chen | D. Greening | Rong Xu | Wittaya Suwakulsiri | Richard J. Simpson | A. Rai | Adnan Shafiq
[1] A. Clayton,et al. Challenges and directions in studying cell–cell communication by extracellular vesicles , 2022, Nature Reviews Molecular Cell Biology.
[2] Jian Peng,et al. Wnt/β-catenin signaling in colorectal cancer: Is therapeutic targeting even possible? , 2022, Biochimie.
[3] Qiu-lin Tang,et al. Role of oncogenic KRAS in the prognosis, diagnosis and treatment of colorectal cancer , 2021, Molecular Cancer.
[4] Xiaoyu Hu,et al. Mitocytosis, a migrasome-mediated mitochondrial quality-control process , 2021, Cell.
[5] U. Chandran,et al. Microvesicles Transfer Mitochondria and Increase Mitochondrial Function in Brain Endothelial Cells , 2021, bioRxiv.
[6] A. Hidalgo-Miranda,et al. Quantitative proteomic analysis of extracellular vesicle subgroups isolated by an optimized method combining polymer‐based precipitation and size exclusion chromatography , 2021, Journal of extracellular vesicles.
[7] R. Simpson,et al. Secreted midbody remnants are a class of extracellular vesicles molecularly distinct from exosomes and microparticles , 2021, Communications biology.
[8] M. Tremblay,et al. Platelets release mitochondrial antigens in systemic lupus erythematosus , 2021, Science Translational Medicine.
[9] S. Chakrabortty,et al. Exosome-based liquid biopsies in cancer: opportunities and challenges , 2021, Annals of oncology : official journal of the European Society for Medical Oncology.
[10] Yohan Kim,et al. Mitovesicles are a novel population of extracellular vesicles of mitochondrial origin altered in Down syndrome , 2021, Science Advances.
[11] E. Mukamel,et al. Single-Cell Sequencing of Brain Cell Transcriptomes and Epigenomes , 2021, Neuron.
[12] H. An,et al. Acetylation and Deacetylation of DNA Repair Proteins in Cancers , 2020, Frontiers in Oncology.
[13] Shu Zheng,et al. Application of exosomes as liquid biopsy in clinical diagnosis , 2020, Signal Transduction and Targeted Therapy.
[14] J. Yun,et al. GYS1 induces glycogen accumulation and promotes tumor progression via the NF-κB pathway in Clear Cell Renal Carcinoma , 2020, Theranostics.
[15] A. Echard,et al. The Flemmingsome reveals an ESCRT-to-membrane coupling via ALIX/syntenin/syndecan-4 required for completion of cytokinesis , 2020, Nature Communications.
[16] G. Karagiannis,et al. Midkine (MDK) growth factor: a key player in cancer progression and a promising therapeutic target , 2019, Oncogene.
[17] R. Simpson,et al. Proteomic profiling reveals key cancer progression modulators in shed microvesicles released from isogenic human primary and metastatic colorectal cancer cell lines. , 2019, Biochimica et biophysica acta. Proteins and proteomics.
[18] Anton J. Enright,et al. The midbody interactome reveals unexpected roles for PP1 phosphatases in cytokinesis , 2019, Nature Communications.
[19] G. Raposo,et al. The post-abscission midbody is an intracellular signaling organelle that regulates cell proliferation , 2019, Nature Communications.
[20] Michael Zhuo Wang,et al. Overview of Extracellular Vesicles, Their Origin, Composition, Purpose, and Methods for Exosome Isolation and Analysis , 2019, Cells.
[21] Dylan T Burnette,et al. Reassessment of Exosome Composition , 2019, Cell.
[22] Annie W Shieh,et al. Transcriptome-wide isoform-level dysregulation in ASD, schizophrenia, and bipolar disorder , 2018, Science.
[23] Jing Xu,et al. Minimal information for studies of extracellular vesicles 2018 (MISEV2018): a position statement of the International Society for Extracellular Vesicles and update of the MISEV2014 guidelines , 2018, Journal of Extracellular Vesicles.
[24] M. K. Pflum,et al. HDAC1 Substrate Profiling Using Proteomics-Based Substrate Trapping. , 2018, ACS chemical biology.
[25] R. Simpson,et al. Understanding extracellular vesicle diversity – current status , 2018, Expert review of proteomics.
[26] David W. Greening,et al. Extracellular vesicles in cancer — implications for future improvements in cancer care , 2018, Nature Reviews Clinical Oncology.
[27] Juan Xu,et al. Synovial fluid-derived exosomal lncRNA PCGEM1 as biomarker for the different stages of osteoarthritis , 2018, International Orthopaedics.
[28] T. Dokland,et al. Exosomal transfer of mitochondria from airway myeloid-derived regulatory cells to T cells☆ , 2018, Redox biology.
[29] Imre Mäger,et al. Extracellular Vesicle Heterogeneity: Subpopulations, Isolation Techniques, and Diverse Functions in Cancer Progression , 2018, Front. Immunol..
[30] H. Valadi,et al. Identification of RNA-binding proteins in exosomes capable of interacting with different types of RNA: RBP-facilitated transport of RNAs into exosomes , 2018, PloS one.
[31] Graça Raposo,et al. Shedding light on the cell biology of extracellular vesicles , 2018, Nature Reviews Molecular Cell Biology.
[32] R. Parker,et al. Isolation of yeast and mammalian stress granule cores. , 2017, Methods.
[33] Alicia Llorente,et al. Current knowledge on exosome biogenesis and release , 2017, Cellular and Molecular Life Sciences.
[34] S. Jakob,et al. Isolation of Intact Mitochondria from Skeletal Muscle by Differential Centrifugation for High-resolution Respirometry Measurements. , 2017, Journal of visualized experiments : JoVE.
[35] A. Koromilas,et al. STAT1 Promotes KRAS Colon Tumor Growth and Susceptibility to Pharmacological Inhibition of Translation Initiation Factor eIF4A , 2016, Molecular Cancer Therapeutics.
[36] Hong-Jian Zhu,et al. Extracellular vesicle isolation and characterization: toward clinical application. , 2016, The Journal of clinical investigation.
[37] Henrik J Johansson,et al. Cells release subpopulations of exosomes with distinct molecular and biological properties , 2016, Scientific Reports.
[38] C. Théry,et al. Proteomic comparison defines novel markers to characterize heterogeneous populations of extracellular vesicle subtypes , 2016, Proceedings of the National Academy of Sciences.
[39] R. Simpson,et al. Highly-purified exosomes and shed microvesicles isolated from the human colon cancer cell line LIM1863 by sequential centrifugal ultrafiltration are biochemically and functionally distinct. , 2015, Methods.
[40] J. Hurley,et al. ESCRTs are everywhere , 2015, The EMBO journal.
[41] Xiao‐Jing Wang,et al. Midbody: from cellular junk to regulator of cell polarity and cell fate. , 2015, Current opinion in cell biology.
[42] T. Verano-Braga,et al. SuperQuant: A Data Processing Approach to Increase Quantitative Proteome Coverage. , 2015, Analytical chemistry.
[43] J. Meldolesi,et al. Ectosomes and exosomes: shedding the confusion between extracellular vesicles. , 2015, Trends in cell biology.
[44] R. Minghim,et al. InteractiVenn: a web-based tool for the analysis of sets through Venn diagrams , 2015, BMC Bioinformatics.
[45] C. Stratakis,et al. PRKACA: the catalytic subunit of protein kinase A and adrenocortical tumors , 2015, Front. Cell Dev. Biol..
[46] R. Simpson,et al. YBX1/YB-1 induces partial EMT and tumourigenicity through secretion of angiogenic factors into the extracellular microenvironment , 2015, Oncotarget.
[47] Yu Xue,et al. MiCroKiTS 4.0: a database of midbody, centrosome, kinetochore, telomere and spindle , 2014, Nucleic Acids Res..
[48] C. Théry,et al. Biogenesis, secretion, and intercellular interactions of exosomes and other extracellular vesicles. , 2014, Annual review of cell and developmental biology.
[49] Shirley L. Campbell,et al. ARF1 regulates the Rho/MLC pathway to control EGF-dependent breast cancer cell invasion , 2014, Molecular biology of the cell.
[50] Weijun Luo,et al. Pathview: an R/Bioconductor package for pathway-based data integration and visualization , 2013, Bioinform..
[51] Hong-Jian Zhu,et al. Proteome profiling of exosomes derived from human primary and metastatic colorectal cancer cells reveal differential expression of key metastatic factors and signal transduction components , 2013, Proteomics.
[52] S. Kaliyaperumal,et al. Structural, molecular and cellular functions of MSH2 and MSH6 during DNA mismatch repair, damage signaling and other noncanonical activities. , 2013, Mutation research.
[53] S. Mathivanan,et al. Two Distinct Populations of Exosomes Are Released from LIM1863 Colon Carcinoma Cell-derived Organoids* , 2012, Molecular & Cellular Proteomics.
[54] R. Coffey,et al. Proteomic Analysis of Exosomes from Mutant KRAS Colon Cancer Cells Identifies Intercellular Transfer of Mutant KRAS* , 2012, Molecular & Cellular Proteomics.
[55] Guangchuang Yu,et al. clusterProfiler: an R package for comparing biological themes among gene clusters. , 2012, Omics : a journal of integrative biology.
[56] Stanley N Cohen,et al. Formation and release of arrestin domain-containing protein 1-mediated microvesicles (ARMMs) at plasma membrane by recruitment of TSG101 protein , 2012, Proceedings of the National Academy of Sciences.
[57] Richard J Simpson,et al. Comparison of ultracentrifugation, density gradient separation, and immunoaffinity capture methods for isolating human colon cancer cell line LIM1863-derived exosomes. , 2012, Methods.
[58] Bo Li,et al. RhoA triggers a specific signaling pathway that generates transforming microvesicles in cancer cells , 2012, Oncogene.
[59] Jared L. Johnson,et al. Cancer cell-derived microvesicles induce transformation by transferring tissue transglutaminase and fibronectin to recipient cells , 2011, Proceedings of the National Academy of Sciences.
[60] M. Robinson,et al. A scaling normalization method for differential expression analysis of RNA-seq data , 2010, Genome Biology.
[61] Graca Raposo,et al. ARF6-Regulated Shedding of Tumor Cell-Derived Plasma Membrane Microvesicles , 2009, Current Biology.
[62] Davis J. McCarthy,et al. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..
[63] M. Mann,et al. MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification , 2008, Nature Biotechnology.
[64] A. Guha,et al. Intercellular transfer of the oncogenic receptor EGFRvIII by microvesicles derived from tumour cells , 2008, Nature Cell Biology.
[65] T. Trikalinos,et al. Hereditary nonpolyposis colorectal cancer: diagnostic strategies and their implications. , 2007, Evidence report/technology assessment.
[66] Sascha Keller,et al. Exosomes: from biogenesis and secretion to biological function. , 2006, Immunology letters.
[67] J. Yates,et al. Dissection of the Mammalian Midbody Proteome Reveals Conserved Cytokinesis Mechanisms , 2004, Science.
[68] G. Stamp,et al. Validation of a model of colon cancer progression , 2000, The Journal of pathology.
[69] S. Schmid,et al. Regulation of signal transduction by endocytosis. , 2000, Current opinion in cell biology.
[70] R. Prekeris,et al. Understanding post-mitotic roles of the midbody during cell differentiation and polarization. , 2017, Methods in cell biology.
[71] Juan P Albar,et al. The Minimal Information about a Proteomics Experiment (MIAPE) from the Proteomics Standards Initiative. , 2014, Methods in molecular biology.
[72] Shirley L. Campbell,et al. ARF 1 regulates the Rho / MLC pathway to control EGF-dependent breast cancer cell invasion , 2013 .
[73] M. Glotzer,et al. The 3Ms of central spindle assembly: microtubules, motors and MAPs , 2009, Nature Reviews Molecular Cell Biology.
[74] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[75] JoVE Video Dataset , 2022 .