Animal movement constraints improve resource selection inference in the presence of telemetry error.

Multiple factors complicate the analysis of animal telemetry location data. Recent advancements address issues such as temporal autocorrelation and telemetry measurement error, but additional challenges remain. Difficulties introduced by complicated error structures or barriers to animal movement can weaken inference. We propose an approach for obtaining resource selection inference from animal location data that accounts for complicated error structures, movement constraints, and temporally autocorrelated observations. We specify a model for telemetry data observed with error conditional on unobserved true locations that reflects prior knowledge about constraints in the animal movement process. The observed telemetry data are modeled using a flexible distribution that accommodates extreme errors and complicated error structures. Although constraints to movement are often viewed as a nuisance, we use constraints to simultaneously estimate and account for telemetry error. We apply the model to simulated data, showing that it outperforms common ad hoc approaches used when confronted with measurement error and movement constraints. We then apply our framework to an Argos satellite telemetry data set on harbor seals (Phoca vitulina) in the Gulf of Alaska, a species that is constrained to move within the marine environment and adjacent coastlines.

[1]  Daniel P. Costa,et al.  Accuracy of ARGOS Locations of Pinnipeds at-Sea Estimated Using Fastloc GPS , 2010, PloS one.

[2]  Subhash R Lele,et al.  Weighted distributions and estimation of resource selection probability functions. , 2006, Ecology.

[3]  Brett T. McClintock,et al.  Combining individual animal movement and ancillary biotelemetry data to investigate population-level activity budgets , 2013 .

[4]  Francesca Cagnacci,et al.  Resolving issues of imprecise and habitat-biased locations in ecological analyses using GPS telemetry data , 2010, Philosophical Transactions of the Royal Society B: Biological Sciences.

[5]  Ian D. Jonsen,et al.  ROBUST STATE-SPACE MODELING OF ANIMAL MOVEMENT DATA , 2005 .

[6]  Stuart L. Pimm,et al.  Fences and artificial water affect African savannah elephant movement patterns , 2009 .

[7]  Chris J. Johnson,et al.  Sensitivity of species-distribution models to error, bias, and model design: An application to resource selection functions for woodland caribou , 2008 .

[8]  J. Fieberg,et al.  Comparative interpretation of count, presence–absence and point methods for species distribution models , 2012 .

[9]  Lee A. Vierling,et al.  Effects of habitat on GPS collar performance: using data screening to reduce location error , 2007 .

[10]  E. Blankenship,et al.  Correction of location errors for presence‐only species distribution models , 2014 .

[11]  Patrick W. Robinson,et al.  Electronic tracking tag programming is critical to data collection for behavioral time‐series analysis , 2011 .

[12]  Juan M. Morales,et al.  EXTRACTING MORE OUT OF RELOCATION DATA: BUILDING MOVEMENT MODELS AS MIXTURES OF RANDOM WALKS , 2004 .

[13]  S. Goldhor Ecology , 1964, The Yale Journal of Biology and Medicine.

[14]  Devin S Johnson,et al.  Continuous-time correlated random walk model for animal telemetry data. , 2008, Ecology.

[15]  J. Hoef,et al.  DIFFERENTIAL MOVEMENTS BY HARBOR SEAL PUPS IN CONTRASTING ALASKA ENVIRONMENTS , 2005 .

[16]  BRUNO CARGNELUTTI,et al.  Testing Global Positioning System Performance for Wildlife Monitoring Using Mobile Collars and Known Reference Points , 2007 .

[17]  M. Hooten,et al.  Velocity-Based Movement Modeling for Individual and Population Level Inference , 2011, PloS one.

[18]  R. Kowalczyk,et al.  Do Fences or Humans Inhibit the Movements of Large Mammals in Białowieża Primeval Forest , 2012 .

[19]  M. Shinoda,et al.  Fragmentation of the Habitat of Wild Ungulates by Anthropogenic Barriers in Mongolia , 2013, PloS one.

[20]  Brett T. McClintock,et al.  Modelling animal movement using the Argos satellite telemetry location error ellipse , 2015 .

[21]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[22]  M. Hindell,et al.  Enhancing the Use of Argos Satellite Data for Home Range and Long Distance Migration Studies of Marine Animals , 2012, PloS one.

[23]  O. Ovaskainen,et al.  State-space models of individual animal movement. , 2008, Trends in ecology & evolution.

[24]  B. Manly,et al.  Resource selection by animals: statistical design and analysis for field studies. , 1994 .

[25]  Mevin B. Hooten,et al.  Agent-Based Inference for Animal Movement and Selection , 2010 .

[26]  Bernie J. McConnell,et al.  Estimating space‐use and habitat preference from wildlife telemetry data , 2008 .

[27]  Mark S Boyce,et al.  Correlation and studies of habitat selection: problem, red herring or opportunity? , 2010, Philosophical Transactions of the Royal Society B: Biological Sciences.

[28]  Edsger W. Dijkstra,et al.  A note on two problems in connexion with graphs , 1959, Numerische Mathematik.

[29]  Paul J Rathouz,et al.  Accounting for animal movement in estimation of resource selection functions: sampling and data analysis. , 2009, Ecology.

[30]  Ian D. Jonsen,et al.  META‐ANALYSIS OF ANIMAL MOVEMENT USING STATE‐SPACE MODELS , 2003 .

[31]  Robert M Dorazio,et al.  Predicting the Geographic Distribution of a Species from Presence‐Only Data Subject to Detection Errors , 2012, Biometrics.

[32]  Roland Kays,et al.  Moderating Argos location errors in animal tracking data , 2012 .

[33]  Michael A. Fedak,et al.  A simple new algorithm to filter marine mammal Argos locations , 2008 .

[34]  Devin S Johnson,et al.  A General Framework for the Analysis of Animal Resource Selection from Telemetry Data , 2008, Biometrics.

[35]  L. Lowry,et al.  MOVEMENTS OF SATELLITE‐TAGGED SUBADULT AND ADULT HARBOR SEALS IN PRINCE WILLIAM SOUND, ALASKA , 2001 .

[36]  Mevin B. Hooten,et al.  Temporal variation and scale in movement-based resource selection functions , 2014 .

[37]  Brett T. McClintock,et al.  A general discrete‐time modeling framework for animal movement using multistate random walks , 2012 .

[38]  I. Jonsen,et al.  Assessing Performance of Bayesian State-Space Models Fit to Argos Satellite Telemetry Locations Processed with Kalman Filtering , 2014, PloS one.

[39]  Darcy R. Visscher,et al.  GPS measurement error and resource selection functions in a fragmented landscape , 2006 .

[40]  Mevin B Hooten,et al.  Estimating animal resource selection from telemetry data using point process models. , 2013, The Journal of animal ecology.

[41]  P. Diggle,et al.  Geostatistical inference under preferential sampling , 2010 .

[42]  Michael D. Sumner,et al.  Bayesian Estimation of Animal Movement from Archival and Satellite Tags , 2009, PloS one.