TAR Syndrome-associated Rbm8a deficiency causes hematopoietic defects and attenuates Wnt/PCP signaling

Defects in blood development frequently occur among syndromic congenital anomalies. Thrombocytopenia-Absent Radius (TAR) Syndrome is a rare congenital condition with reduced platelets (hypomegakaryocytic thrombocytopenia) and forelimb anomalies, concurrent with more variable heart and kidney defects. TAR syndrome associates with hypomorphic gene function for RBM8A/Y14 that encodes a component of the exon junction complex involved in mRNA splicing, transport, and nonsense-mediated decay. How perturbing a general mRNA-processing factor causes the selective TAR Syndrome phenotypes remains unknown. Here, we connect zebrafish rbm8a perturbation to early hematopoietic defects via attenuated non-canonical Wnt/Planar Cell Polarity (PCP) signaling that controls developmental cell arrangements. In hypomorphic rbm8a zebrafish, we observe a significant reduction of cd41-positive thrombocytes. rbm8a-mutant zebrafish embryos accumulate mRNAs with individual retained introns, a hallmark of defective nonsense-mediated decay; affected mRNAs include transcripts for non-canonical Wnt/PCP pathway components. We establish that rbm8a-mutant embryos show convergent extension defects and that reduced rbm8a function interacts with perturbations in non-canonical Wnt/PCP pathway genes wnt5b, wnt11f2, fzd7a, and vangl2. Using live-imaging, we found reduced rbm8a function impairs the architecture of the lateral plate mesoderm (LPM) that forms hematopoietic, cardiovascular, kidney, and forelimb skeleton progenitors as affected in TAR Syndrome. Both mutants for rbm8a and for the PCP gene vangl2 feature impaired expression of early hematopoietic/endothelial genes including runx1 and the megakaryocyte regulator gfi1aa. Together, our data propose aberrant LPM patterning and hematopoietic defects as possible consequence of attenuated non-canonical Wnt/PCP signaling upon reduced rbm8a function. These results link TAR Syndrome to a potential LPM origin and developmental mechanism.

[1]  C. Balduini The name counts: the case of 'congenital amegakaryocytic thrombocytopenia' , 2022, Haematologica.

[2]  Cheng Yong Tham,et al.  Independent origins of fetal liver haematopoietic stem and progenitor cells , 2022, Nature.

[3]  S. Hui,et al.  Celsr family genes are dynamically expressed in embryonic and juvenile zebrafish , 2022, Developmental neurobiology.

[4]  Helena L. Crowell,et al.  Hand2 delineates mesothelium progenitors and is reactivated in mesothelioma , 2020, Nature Communications.

[5]  Belinda B. Guo,et al.  The RNA-binding protein SRSF3 has an essential role in megakaryocyte maturation and platelet production , 2021, Blood.

[6]  G. Chaconas,et al.  Live Imaging. , 2020, Current issues in molecular biology.

[7]  T. Möröy,et al.  Multifaceted Actions of GFI1 and GFI1B in Hematopoietic Stem Cell Self-Renewal and Lineage Commitment , 2020, Frontiers in Genetics.

[8]  A. M. Arias,et al.  Axis Specification in Zebrafish Is Robust to Cell Mixing and Reveals a Regulation of Pattern Formation by Morphogenesis , 2020, Current Biology.

[9]  R. Bundschuh,et al.  Zebrafish rbm8a and magoh mutants reveal EJC developmental functions and new 3′UTR intron-containing NMD targets , 2020, PLoS genetics.

[10]  P. Jouk,et al.  TAR syndrome: Clinical and molecular characterization of a cohort of 26 patients and description of novel noncoding variants of RBM8A , 2020, Human mutation.

[11]  Jianbo Wang,et al.  Planar cell polarity signaling regulates polarized second heart field morphogenesis to promote both arterial and venous pole septation , 2019, Development.

[12]  Peter Aleström,et al.  Zebrafish: Housing and husbandry recommendations , 2019, Laboratory animals.

[13]  Alireza Hadj Khodabakhshi,et al.  Metascape provides a biologist-oriented resource for the analysis of systems-level datasets , 2019, Nature Communications.

[14]  P. Frenette,et al.  Haematopoietic stem cell activity and interactions with the niche , 2019, Nature Reviews Molecular Cell Biology.

[15]  J. Jessen,et al.  Dorsal convergence of gastrula cells requires Vangl2 and an adhesion protein-dependent change in protrusive activity , 2019, Development.

[16]  Stephan Preibisch,et al.  BigStitcher: reconstructing high-resolution image datasets of cleared and expanded samples , 2018, Nature Methods.

[17]  Long Gao,et al.  RUNX1 and the endothelial origin of blood. , 2018, Experimental hematology.

[18]  Shuai Gao,et al.  Hematopoietic Hierarchy - An Updated Roadmap. , 2018, Trends in cell biology.

[19]  W. Chung,et al.  Genetic Basis for Congenital Heart Disease: Revisited: A Scientific Statement From the American Heart Association. , 2018, Circulation.

[20]  J. Jessen,et al.  Vangl2-dependent regulation of membrane protrusions and directed migration requires a fibronectin extracellular matrix , 2018, Development.

[21]  M. Gering,et al.  Gfi1aa and Gfi1b set the pace for primitive erythroblast differentiation from hemangioblasts in the zebrafish embryo. , 2018, Blood advances.

[22]  C. Mosimann,et al.  Planar cell polarity signalling coordinates heart tube remodelling through tissue-scale polarisation of actomyosin activity , 2018, Nature Communications.

[23]  R. Patient,et al.  An optimised pipeline for parallel image-based quantification of gene expression and genotyping after in situ hybridisation , 2018, Biology Open.

[24]  Stephan C F Neuhauss,et al.  Guidelines for morpholino use in zebrafish , 2017, PLoS genetics.

[25]  Ken W. Y. Cho,et al.  Foxh1 Occupies cis-Regulatory Modules Prior to Dynamic Transcription Factor Interactions Controlling the Mesendoderm Gene Program. , 2017, Developmental cell.

[26]  John B. Wallingford,et al.  Planar cell polarity in development and disease , 2017, Nature Reviews Molecular Cell Biology.

[27]  C. Mosimann,et al.  Early frameshift alleles of zebrafish tbx5a that fail to develop the heartstrings phenotype , 2017, bioRxiv.

[28]  Alessandro Vullo,et al.  Ensembl 2017 , 2016, Nucleic Acids Res..

[29]  L. Zon,et al.  Sorting zebrafish thrombocyte lineage cells with a Cd41 monoclonal antibody enriches hematopoietic stem cell activity. , 2017, Blood.

[30]  D. Silver,et al.  The exon junction complex in neural development and neurodevelopmental disease , 2016, International Journal of Developmental Neuroscience.

[31]  M. Konantz,et al.  Evi1 regulates Notch activation to induce zebrafish hematopoietic stem cell emergence , 2016, The EMBO journal.

[32]  M. Gering,et al.  A gene trap transposon eliminates haematopoietic expression of zebrafish Gfi1aa, but does not interfere with haematopoiesis , 2016, Developmental biology.

[33]  Måns Magnusson,et al.  MultiQC: summarize analysis results for multiple tools and samples in a single report , 2016, Bioinform..

[34]  M. Robinson,et al.  Maximizing mutagenesis with solubilized CRISPR-Cas9 ribonucleoprotein complexes , 2016, Development.

[35]  Zhen Wang,et al.  The exon junction complex as a node of post-transcriptional networks , 2015, Nature Reviews Molecular Cell Biology.

[36]  Florian Hahne,et al.  Visualizing Genomic Data Using Gviz and Bioconductor , 2016, Statistical Genomics.

[37]  Aaron T. L. Lun,et al.  It's DE-licious: A Recipe for Differential Expression Analyses of RNA-seq Experiments Using Quasi-Likelihood Methods in edgeR , 2016, Statistical Genomics.

[38]  M. Robinson,et al.  Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences , 2015, F1000Research.

[39]  Mark D. Robinson,et al.  Isoform prefiltering improves performance of count-based methods for analysis of differential transcript usage , 2016, Genome Biology.

[40]  K. Nakayama,et al.  Mutations in MECOM, Encoding Oncoprotein EVI1, Cause Radioulnar Synostosis with Amegakaryocytic Thrombocytopenia. , 2015, American Journal of Human Genetics.

[41]  Xidi Wang,et al.  The role of EVI-1 in normal hematopoiesis and myeloid malignancies (Review). , 2015, International journal of oncology.

[42]  M. Mlodzik,et al.  Wnt-Frizzled/planar cell polarity signaling: cellular orientation by facing the wind (Wnt). , 2015, Annual review of cell and developmental biology.

[43]  L. Zon,et al.  Chamber identity programs drive early functional partitioning of the heart , 2015, Nature Communications.

[44]  J. Jessen,et al.  A dynamic intracellular distribution of Vangl2 accompanies cell polarization during zebrafish gastrulation , 2015, Development.

[45]  W. Tarn,et al.  Function and Pathological Implications of Exon Junction Complex Factor Y14 , 2015, Biomolecules.

[46]  Tessa G. Montague,et al.  Efficient Mutagenesis by Cas9 Protein-Mediated Oligonucleotide Insertion and Large-Scale Assessment of Single-Guide RNAs , 2014, PloS one.

[47]  George M. Church,et al.  CHOPCHOP: a CRISPR/Cas9 and TALEN web tool for genome editing , 2014, Nucleic Acids Res..

[48]  Yingzi Yang,et al.  Planar cell polarity in vertebrate limb morphogenesis. , 2013, Current opinion in genetics & development.

[49]  H. Hamm,et al.  Gpr125 modulates Dishevelled distribution and planar cell polarity signaling , 2013, Development.

[50]  P. Newburger,et al.  Novel deletion of RPL15 identified by array-comparative genomic hybridization in Diamond–Blackfan anemia , 2013, Human Genetics.

[51]  C. A. Albers,et al.  New insights into the genetic basis of TAR (thrombocytopenia-absent radii) syndrome. , 2013, Current opinion in genetics & development.

[52]  B. Paw,et al.  Teleost growth factor independence (gfi) genes differentially regulate successive waves of hematopoiesis. , 2013, Developmental biology.

[53]  Thomas R. Gingeras,et al.  STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..

[54]  C. Stoll,et al.  Associated malformations among infants with radial ray deficiency. , 2013, Genetic Counseling.

[55]  Linheng Li,et al.  Noncanonical Wnt Signaling Maintains Hematopoietic Stem Cells in Different Zones , 2012 .

[56]  Johannes E. Schindelin,et al.  Fiji: an open-source platform for biological-image analysis , 2012, Nature Methods.

[57]  Kevin W Eliceiri,et al.  NIH Image to ImageJ: 25 years of image analysis , 2012, Nature Methods.

[58]  W. Huber,et al.  Detecting differential usage of exons from RNA-seq data , 2012, Genome research.

[59]  C. Kratz,et al.  Faculty Opinions recommendation of Compound inheritance of a low-frequency regulatory SNP and a rare null mutation in exon-junction complex subunit RBM8A causes TAR syndrome. , 2012 .

[60]  Elisa Laurenti,et al.  Hematopoiesis: a human perspective. , 2012, Cell stem cell.

[61]  H. Toriello,et al.  Thrombocytopenia-absent radius syndrome , 2003, Archives of disease in childhood.

[62]  Caroline E. Burns,et al.  Latent TGFβ binding protein 3 identifies a second heart field in zebrafish , 2011, Nature.

[63]  P. Gendron,et al.  The Exon Junction Complex Controls the Splicing of mapk and Other Long Intron-Containing Transcripts in Drosophila , 2010, Cell.

[64]  Jean-Yves Roignant,et al.  Exon Junction Complex Subunits Are Required to Splice Drosophila MAP Kinase, a Large Heterochromatic Gene , 2010, Cell.

[65]  Calum A. MacRae,et al.  Wnt11 patterns a myocardial electrical gradient via regulation of the L-type Ca2+ channel , 2010, Nature.

[66]  K. Kissa,et al.  Blood stem cells emerge from aortic endothelium by a novel type of cell transition , 2010, Nature.

[67]  Aaron R. Quinlan,et al.  BIOINFORMATICS APPLICATIONS NOTE , 2022 .

[68]  Mark D. Robinson,et al.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data , 2009, Bioinform..

[69]  L. Solnica-Krezel,et al.  Regulation of convergence and extension movements during vertebrate gastrulation by the Wnt/PCP pathway. , 2009, Seminars in cell & developmental biology.

[70]  A. D’Andrea,et al.  Mouse models of Fanconi anemia. , 2009, Mutation research.

[71]  Elaine Dzierzak,et al.  Runx1 is required for the endothelial to hematopoietic cell transition but not thereafter , 2009, Nature.

[72]  F. Alviano,et al.  Thrombocytopenia with absent radii (TAR) syndrome: from hemopoietic progenitor to mesenchymal stromal cell disease? , 2009, Experimental hematology.

[73]  Tingxi Liu,et al.  Functional characterization of lmo2‐Cre transgenic zebrafish , 2008, Developmental dynamics : an official publication of the American Association of Anatomists.

[74]  D. Traver,et al.  CD41+ cmyb+ precursors colonize the zebrafish pronephros by a novel migration route to initiate adult hematopoiesis , 2008, Development.

[75]  L. Zon,et al.  Hematopoiesis: An Evolving Paradigm for Stem Cell Biology , 2008, Cell.

[76]  E. V. D. van de Kamp,et al.  Redundant Roles for Sox7 and Sox18 in Arteriovenous Specification in Zebrafish , 2008, Circulation research.

[77]  Melissa Hardy,et al.  The Tol2kit: A multisite gateway‐based construction kit for Tol2 transposon transgenesis constructs , 2007, Developmental dynamics : an official publication of the American Association of Anatomists.

[78]  A. Rodaway,et al.  SCL-GFP transgenic zebrafish: in vivo imaging of blood and endothelial development and identification of the initial site of definitive hematopoiesis. , 2007, Developmental biology.

[79]  Kathryn E. Crosier,et al.  Cohesin-dependent regulation of Runx genes , 2007, Development.

[80]  L. Zon,et al.  Prostaglandin E2 regulates vertebrate haematopoietic stem cell homeostasis , 2007, Nature.

[81]  L. Solnica-Krezel,et al.  Convergence and extension movements mediate the specification and fate maintenance of zebrafish slow muscle precursors. , 2007, Developmental biology.

[82]  B. Thisse,et al.  High-resolution in situ hybridization to whole-mount zebrafish embryos , 2007, Nature Protocols.

[83]  A. Beggs,et al.  Ribosomal protein S24 gene is mutated in Diamond-Blackfan anemia. , 2006, American journal of human genetics.

[84]  J. Ebert,et al.  The crystal structure of the Exon Junction Complex at 2.2 A resolution , 2006 .

[85]  J. Campos-Ortega,et al.  Hedgehog signalling controls zebrafish neural keel morphogenesis via its level‐dependent effects on neurogenesis , 2006, Developmental dynamics : an official publication of the American Association of Anatomists.

[86]  Alexander F Schier,et al.  Molecular genetics of axis formation in zebrafish. , 2005, Annual review of genetics.

[87]  V. Korzh,et al.  Wnt signalling mediated by Tbx2b regulates cell migration during formation of the neural plate , 2005, Development.

[88]  L. Zon,et al.  Zebrafish scl functions independently in hematopoietic and endothelial development. , 2005, Developmental biology.

[89]  J. I. Izpisúa Belmonte,et al.  Noncanonical Wnt signaling regulates midline convergence of organ primordia during zebrafish development. , 2005, Genes & development.

[90]  L. Zon,et al.  The ‘definitive’ (and ‘primitive’) guide to zebrafish hematopoiesis , 2004, Oncogene.

[91]  D. Gatfield,et al.  An eIF4AIII-containing complex required for mRNA localization and nonsense-mediated mRNA decay , 2004, Nature.

[92]  Alan D. D'Andrea Fanconi anemia , 2003, Current Biology.

[93]  D. Gatfield,et al.  A novel mode of RBD-protein recognition in the Y14–Mago complex , 2003, Nature Structural Biology.

[94]  Hang Shi,et al.  Crystal structure of the Drosophila Mago nashi-Y14 complex. , 2003, Genes & development.

[95]  H. Brunner,et al.  Thrombocytopenia-absent radius syndrome: a clinical genetic study , 2002, Journal of medical genetics.

[96]  Lilianna Solnica-Krezel,et al.  Zebrafish trilobite identifies new roles for Strabismus in gastrulation and neuronal movements , 2002, Nature Cell Biology.

[97]  Kathryn E. Crosier,et al.  Runx1 is required for zebrafish blood and vessel development and expression of a human RUNX1-CBF2T1 transgene advances a model for studies of leukemogenesis. , 2002, Development.

[98]  A. Amores,et al.  The zebrafish glypican knypek controls cell polarity during gastrulation movements of convergent extension. , 2001, Developmental cell.

[99]  Long T. Nguyen,et al.  Congenital thrombocytopenia and radio‐ulnar synostosis: a new familial syndrome , 2001, British journal of haematology.

[100]  Robert Geisler,et al.  Silberblick/Wnt11 mediates convergent extension movements during zebrafish gastrulation , 2000, Nature.

[101]  N. Nowak,et al.  MAGOH interacts with a novel RNA-binding protein. , 2000, Genomics.

[102]  S. Gilbert Lateral Plate Mesoderm , 2000 .

[103]  Long T. Nguyen,et al.  Amegakaryocytic thrombocytopenia and radio-ulnar synostosis are associated with HOXA11 mutation , 2000, Nature Genetics.

[104]  M. Farrell,et al.  GATA-1 expression pattern can be recapitulated in living transgenic zebrafish using GFP reporter gene. , 1997, Development.

[105]  T. Gerster,et al.  Expression of a zebrafish Cathepsin L gene in anterior mesendoderm and hatching gland , 1997, Development Genes and Evolution.

[106]  C. Nüsslein-Volhard,et al.  Mutations affecting morphogenesis during gastrulation and tail formation in the zebrafish, Danio rerio. , 1996, Development.

[107]  A. Schier,et al.  Mutations affecting cell fates and cellular rearrangements during gastrulation in zebrafish. , 1996, Development.

[108]  M. Capecchi,et al.  Absence of radius and ulna in mice lacking hoxa-11 andhoxd-11 , 1995, Nature.

[109]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .

[110]  H. Weintraub,et al.  Expression of achaete-scute homolog 3 in Xenopus embryos converts ectodermal cells to a neural fate. , 1994, Genes & development.

[111]  M. Westerfield,et al.  Combinatorial expression of three zebrafish genes related to distal- less: part of a homeobox gene code for the head , 1994, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[112]  E M De Robertis,et al.  Expression of zebrafish goosecoid and no tail gene products in wild-type and mutant no tail embryos. , 1994, Development.

[113]  V. García-Martínez,et al.  Positional control of mesoderm movement and fate during avian gastrulation and neurulation , 1992, Developmental dynamics : an official publication of the American Association of Anatomists.

[114]  V. García-Martínez,et al.  Mesoderm movement and fate during avian gastrulation and neurulation , 1992, Developmental dynamics : an official publication of the American Association of Anatomists.

[115]  N. Copeland,et al.  Patterns of Evi-1 expression in embryonic and adult tissues suggest that Evi-1 plays an important regulatory role in mouse development. , 1991, Development.