microRNA-122 target sites in the hepatitis C virus RNA NS5B coding region and 3′ untranslated region: function in replication and influence of RNA secondary structure
暂无分享,去创建一个
I. Hofacker | M. Marz | Christian Höner Zu Siederdissen | M. Niepmann | Lyudmila A. Shalamova | Gesche K. Gerresheim | M. Fricke | Nadia Dünnes | Anika Nieder-Röhrmann | Christian Höner zu Siederdissen | Markus Fricke | C. Höner zu Siederdissen
[1] R. Bartenschlager,et al. Conserved RNA secondary structures and long-range interactions in hepatitis C viruses , 2015, RNA.
[2] A. Mele,et al. Hepatitis C Virus RNA Functionally Sequesters miR-122 , 2015, Cell.
[3] K. Weeks,et al. Functionally conserved architecture of hepatitis C virus RNA genomes , 2015, Proceedings of the National Academy of Sciences.
[4] I. MacRae,et al. Gene regulation. Structural basis for microRNA targeting. , 2014 .
[5] I. MacRae,et al. Structural basis for microRNA targeting , 2014, Science.
[6] Daehyun Baek,et al. mRNA destabilization is the dominant effect of mammalian microRNAs by the time substantial repression ensues. , 2014, Molecular cell.
[7] Jean Hausser,et al. MicroRNA binding sites in the coding region of mRNAs: Extending the repertoire of post‐transcriptional gene regulation , 2014, BioEssays : news and reviews in molecular, cellular and developmental biology.
[8] William A. Rennie,et al. CLIP-based prediction of mammalian microRNA binding sites , 2013, Nucleic acids research.
[9] D. Tollervey,et al. Mapping the Human miRNA Interactome by CLASH Reveals Frequent Noncanonical Binding , 2013, Cell.
[10] V. Lohmann. Hepatitis C Virus RNA Replication , 2013, Current topics in microbiology and immunology.
[11] J. Doudna,et al. Unconventional miR-122 binding stabilizes the HCV genome by forming a trimolecular RNA structure , 2013, Nucleic acids research.
[12] G. Meister,et al. microRNA-122 Dependent Binding of Ago2 Protein to Hepatitis C Virus RNA Is Associated with Enhanced RNA Stability and Translation Stimulation , 2013, PloS one.
[13] M. Zavolan,et al. A biophysical miRNA-mRNA interaction model infers canonical and noncanonical targets , 2013, Nature Methods.
[14] S. Lemon,et al. Competing and noncompeting activities of miR-122 and the 5′ exonuclease Xrn1 in regulation of hepatitis C virus replication , 2012, Proceedings of the National Academy of Sciences.
[15] Ray M. Marín,et al. Analysis of the accessibility of CLIP bound sites reveals that nucleation of the miRNA:mRNA pairing occurs preferentially at the 3'-end of the seed match. , 2012, RNA.
[16] M. Niepmann,et al. Stimulation of Hepatitis C Virus RNA translation by microRNA-122 occurs under different conditions in vivo and in vitro. , 2012, Virus research.
[17] Nahum Sonenberg,et al. The mechanics of miRNA-mediated gene silencing: a look under the hood of miRISC , 2012, Nature Structural &Molecular Biology.
[18] S. Lemon,et al. Base Pairing between Hepatitis C Virus RNA and MicroRNA 122 3′ of Its Seed Sequence Is Essential for Genome Stabilization and Production of Infectious Virus , 2012, Journal of Virology.
[19] C. Jopling,et al. Liver-specific microRNA-122 , 2012, RNA biology.
[20] M. Niepmann,et al. Differential stimulation of hepatitis C virus RNA translation by microRNA-122 in different cell cycle phases , 2012, Cell cycle.
[21] S. Lemon,et al. Stabilization of hepatitis C virus RNA by an Ago2–miR-122 complex , 2012, Proceedings of the National Academy of Sciences.
[22] Peter F. Stadler,et al. ViennaRNA Package 2.0 , 2011, Algorithms for Molecular Biology.
[23] Ashley P E Roberts,et al. miR-122 activates hepatitis C virus translation by a specialized mechanism requiring particular RNA components , 2011, Nucleic acids research.
[24] Nicholas S M Putz,et al. Increased siRNA duplex stability correlates with reduced off-target and elevated on-target effects. , 2011, RNA: A publication of the RNA Society.
[25] Rodney K. Lyn,et al. Competing roles of microRNA-122 recognition elements in hepatitis C virus RNA. , 2011, Virology.
[26] E. Izaurralde,et al. Gene silencing by microRNAs: contributions of translational repression and mRNA decay , 2011, Nature Reviews Genetics.
[27] C. Richardson,et al. Human Ago2 Is Required for Efficient MicroRNA 122 Regulation of Hepatitis C Virus RNA Accumulation and Translation , 2010, Journal of Virology.
[28] Jirí Vanícek,et al. Efficient use of accessibility in microRNA target prediction , 2010, Nucleic Acids Res..
[29] B. Berger,et al. Conserved microRNA targeting in Drosophila is as widespread in coding regions as in 3′UTRs , 2010, Proceedings of the National Academy of Sciences.
[30] S. Lemon,et al. Regulation of Hepatitis C Virus Translation and Infectious Virus Production by the MicroRNA miR-122 , 2010, Journal of Virology.
[31] Scott B. Dewell,et al. Transcriptome-wide Identification of RNA-Binding Protein and MicroRNA Target Sites by PAR-CLIP , 2010, Cell.
[32] M. Niepmann. Activation of hepatitis c virus translation by a liver-specific microRNA , 2009, Cell cycle.
[33] Yann Ponty,et al. VARNA: Interactive drawing and editing of the RNA secondary structure , 2009, Bioinform..
[34] D. Bartel. MicroRNAs: Target Recognition and Regulatory Functions , 2009, Cell.
[35] J. Doudna,et al. A three-dimensional view of the molecular machinery of RNA interference , 2009, Nature.
[36] T. Tuschl,et al. Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex , 2008, Nature.
[37] G. Obernosterer,et al. Target site effects in the RNA interference and microRNA pathways. , 2008, Biochemical Society transactions.
[38] Michael Niepmann,et al. microRNA-122 stimulates translation of hepatitis C virus RNA , 2008, The EMBO journal.
[39] Gunter Meister,et al. A multifunctional human Argonaute2-specific monoclonal antibody. , 2008, RNA.
[40] U. A. Ørom,et al. MicroRNA-10a binds the 5'UTR of ribosomal protein mRNAs and enhances their translation. , 2008, Molecular cell.
[41] Ronny Lorenz,et al. The Vienna RNA Websuite , 2008, Nucleic Acids Res..
[42] J. Kitzman,et al. Determinants of targeting by endogenous and exogenous microRNAs and siRNAs. , 2007, RNA.
[43] I. Hofacker. How microRNAs choose their targets , 2007, Nature Genetics.
[44] Michael Kertesz,et al. The role of site accessibility in microRNA target recognition , 2007, Nature Genetics.
[45] G. Meister,et al. Identification of Human microRNA Targets From Isolated Argonaute Protein Complexes , 2007, RNA biology.
[46] Dang D. Long,et al. Potent effect of target structure on microRNA function , 2007, Nature Structural &Molecular Biology.
[47] R. Bartenschlager,et al. The Hepatitis C Virus RNA 3′-Untranslated Region Strongly Enhances Translation Directed by the Internal Ribosome Entry Site , 2006, Journal of Virology.
[48] A. Shavinskaya,et al. Construction and characterization of infectious intragenotypic and intergenotypic hepatitis C virus chimeras. , 2006, Proceedings of the National Academy of Sciences of the United States of America.
[49] Ligang Wu,et al. Micro-RNA Regulation of the Mammalian lin-28 Gene during Neuronal Differentiation of Embryonal Carcinoma Cells , 2005, Molecular and Cellular Biology.
[50] P. Sarnow,et al. Modulation of Hepatitis C Virus RNA Abundance by a Liver-Specific MicroRNA , 2005, Science.
[51] Toshiaki Maruyama,et al. Complete Replication of Hepatitis C Virus in Cell Culture , 2005, Science.
[52] C. Burge,et al. Conserved Seed Pairing, Often Flanked by Adenosines, Indicates that Thousands of Human Genes are MicroRNA Targets , 2005, Cell.
[53] C. Sander,et al. miR-122, a Mammalian Liver-Specific microRNA, is Processed from hcr mRNA and MayDownregulate the High Affinity Cationic Amino Acid Transporter CAT-1 , 2004, RNA biology.
[54] D. Turner,et al. Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[55] M. Mizokami,et al. Efficient replication of the genotype 2a hepatitis C virus subgenomic replicon. , 2003, Gastroenterology.
[56] R. Bartenschlager,et al. Hepatitis C virus RNA replication is resistant to tumour necrosis factor-α , 2003 .
[57] J. Silver,et al. Replication of Subgenomic Hepatitis C Virus Rnas in a Hepatoma Cell Line , 1999 .
[58] M. Lai,et al. The 3′-Untranslated Region of Hepatitis C Virus RNA Enhances Translation from an Internal Ribosomal Entry Site , 1998, Journal of Virology.
[59] M. Niepmann. Hepatitis C virus RNA translation. , 2013, Current topics in microbiology and immunology.
[60] F. Penin,et al. Hepatitis C virus proteins: from structure to function. , 2013, Current topics in microbiology and immunology.