Single-Cell Map of Diverse Immune Phenotypes in the Breast Tumor Microenvironment
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Ambrose J. Carr | D. Pe’er | L. Mazutis | M. Setty | Kristy Choi | E. Azizi | Ambrose Carr | G. Plitas | A. Cornish | Catherine Konopacki | Sandhya Prabhakaran | J. Nainys | Kenmin Wu | V. Kiseliovas | R. Fromme | Phuong Dao | Peter T. McKenney | R. Wasti | Krishna Kadaveru | A. Rudensky | K. Choi
[1] J. Hartigan,et al. The Dip Test of Unimodality , 1985 .
[2] A. Bhattacharyya. On a Geometrical Representation of Probability Distributions and its use in Statistical Inference. , 1990 .
[3] Tony Jebara,et al. Probability Product Kernels , 2004, J. Mach. Learn. Res..
[4] Ann B. Lee,et al. Geometric diffusions as a tool for harmonic analysis and structure definition of data: diffusion maps. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[5] Tilman Brummer,et al. Positive regulation of immune cell function and inflammatory responses by phosphatase PAC-1 , 2006, Nature Immunology.
[6] T. Tao,et al. On random ±1 matrices: Singularity and determinant , 2006 .
[7] Terence Tao,et al. On random plus/minus 1 matrices: Singularity and determinant , 2006, Random Struct. Algorithms.
[8] Geoffrey E. Hinton,et al. Visualizing Data using t-SNE , 2008 .
[9] Carl E. Rasmussen,et al. Dirichlet Process Gaussian Mixture Models: Choice of the Base Distribution , 2010, Journal of Computer Science and Technology.
[10] A. Giaccia,et al. Hypoxia, inflammation, and the tumor microenvironment in metastatic disease , 2010, Cancer and Metastasis Reviews.
[11] N. Friedman,et al. Densely Interconnected Transcriptional Circuits Control Cell States in Human Hematopoiesis , 2011, Cell.
[12] Colin N. Dewey,et al. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome , 2011, BMC Bioinformatics.
[13] A. Rudensky,et al. Regulatory T cells: mechanisms of differentiation and function. , 2012, Annual review of immunology.
[14] B. Faircloth,et al. Not All Sequence Tags Are Created Equal: Designing and Validating Sequence Identification Tags Robust to Indels , 2012, PloS one.
[15] Sean C. Bendall,et al. Normalization of mass cytometry data with bead standards , 2013, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[16] A. Mantovani,et al. Tumor-Associated Macrophages as a Paradigm of Macrophage Plasticity, Diversity, and Polarization: Lessons and Open Questions , 2013, Arteriosclerosis, thrombosis, and vascular biology.
[17] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..
[18] Sean C. Bendall,et al. viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia , 2013, Nature Biotechnology.
[19] S. Gordon,et al. The M1 and M2 paradigm of macrophage activation: time for reassessment , 2014, F1000prime reports.
[20] C. Benoist,et al. Treg cells expressing the coinhibitory molecule TIGIT selectively inhibit proinflammatory Th1 and Th17 cell responses. , 2014, Immunity.
[21] Will Liao,et al. The cellular and molecular origin of tumor-associated macrophages , 2014, Science.
[22] I. Amit,et al. Massively Parallel Single-Cell RNA-Seq for Marker-Free Decomposition of Tissues into Cell Types , 2014, Science.
[23] Sean C. Bendall,et al. Data-Driven Phenotypic Dissection of AML Reveals Progenitor-like Cells that Correlate with Prognosis , 2015, Cell.
[24] Andrew Menzies,et al. Subclonal diversification of primary breast cancer revealed by multiregion sequencing , 2015, Nature Medicine.
[25] Eli R. Zunder,et al. Palladium-based mass tag cell barcoding with a doublet-filtering scheme and single-cell deconvolution algorithm , 2015, Nature Protocols.
[26] Fabian J. Theis,et al. Diffusion maps for high-dimensional single-cell analysis of differentiation data , 2015, Bioinform..
[27] F. Geissmann,et al. The development and maintenance of resident macrophages , 2015, Nature Immunology.
[28] C. Drake,et al. Immune checkpoint blockade: a common denominator approach to cancer therapy. , 2015, Cancer cell.
[29] S. Loi,et al. Relevance of tumor-infiltrating lymphocytes in breast cancer , 2015, BMC Medicine.
[30] Allon M. Klein,et al. Droplet Barcoding for Single-Cell Transcriptomics Applied to Embryonic Stem Cells , 2015, Cell.
[31] Rona S. Gertner,et al. Single-Cell Genomics Unveils Critical Regulators of Th17 Cell Pathogenicity , 2015, Cell.
[32] E. Wherry,et al. Molecular and cellular insights into T cell exhaustion , 2015, Nature Reviews Immunology.
[33] E. Wherry,et al. Overcoming T cell exhaustion in infection and cancer. , 2015, Trends in immunology.
[34] M. Pittet,et al. The role of myeloid cells in cancer therapies , 2016, Nature Reviews Cancer.
[35] T. Schumacher,et al. Neoantigen landscape dynamics during human melanoma–T cell interactions , 2016, Nature.
[36] Ludmila V. Danilova,et al. Tumor immune microenvironment characterization in clear cell renal cell carcinoma identifies prognostic and immunotherapeutically relevant messenger RNA signatures , 2016, Genome Biology.
[37] Sandhya Prabhakaran,et al. Dirichlet Process Mixture Model for Correcting Technical Variation in Single-Cell Gene Expression Data , 2016, ICML.
[38] Aviv Regev,et al. A Distinct Gene Module for Dysfunction Uncoupled from Activation in Tumor-Infiltrating T Cells , 2016, Cell.
[39] Charles H. Yoon,et al. Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq , 2016, Science.
[40] A. Rudensky,et al. Hallmarks of Tissue-Resident Lymphocytes , 2016, Cell.
[41] Lior Pachter,et al. Near-optimal probabilistic RNA-seq quantification , 2016, Nature Biotechnology.
[42] G. Plitas,et al. Regulatory T Cells Exhibit Distinct Features in Human Breast Cancer. , 2016, Immunity.
[43] Harini Veeraraghavan,et al. Heterogeneous Tumor-Immune Microenvironments among Differentially Growing Metastases in an Ovarian Cancer Patient , 2017, Cell.
[44] Andrea Sottoriva,et al. Between-Region Genetic Divergence Reflects the Mode and Tempo of Tumor Evolution , 2017, Nature Genetics.
[45] Boxi Kang,et al. Landscape of Infiltrating T Cells in Liver Cancer Revealed by Single-Cell Sequencing , 2017, Cell.
[46] A. Kriegstein,et al. Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment , 2017, Genome Biology.
[47] Michael B. Stadler,et al. An Immune Atlas of Clear Cell Renal Cell Carcinoma , 2017, Cell.
[48] S. Sakaguchi,et al. Regulatory T cells in cancer immunotherapy , 2016, Cell Research.
[49] Christina S. Leslie,et al. Chromatin states define tumor-specific T cell dysfunction and reprogramming , 2017, Nature.
[50] Allon M. Klein,et al. Single-cell barcoding and sequencing using droplet microfluidics , 2016, Nature Protocols.
[51] Benjamin D. Greenbaum,et al. Innate Immune Landscape in Early Lung Adenocarcinoma by Paired Single-Cell Analyses , 2017, Cell.
[52] Allon M Klein,et al. Single-cell gene expression reveals a landscape of regulatory T cell phenotypes shaped by the TCR , 2018, Nature Immunology.