Approximate Tandem Repeats

[1]  Gary Benson,et al.  Tandem repeats over the edit distance , 2007, Bioinform..

[2]  M. Lothaire,et al.  Applied Combinatorics on Words , 2005 .

[3]  Dan Gusfield,et al.  Algorithms on Strings, Trees, and Sequences - Computer Science and Computational Biology , 1997 .

[4]  Uzi Vishkin,et al.  Fast String Matching with k Differences , 1988, J. Comput. Syst. Sci..

[5]  J. Butler,et al.  Forensic DNA Typing: Biology and Technology behind STR Markers , 2002, Heredity.

[6]  M. Crochemore.  Recherche linéaire d'un carré dans un mot , 1983 .

[7]  Gad M. Landau,et al.  An Algorithm for Approximate Tandem Repeats , 2001, J. Comput. Biol..

[8]  Michael G. Main,et al.  Detecting leftmost maximal periodicities , 1989, Discret. Appl. Math..

[9]  Philipp W. Messer,et al.  The majority of recent short DNA insertions in the human genome are tandem duplications. , 2007, Molecular biology and evolution.

[10]  Eric Rivals,et al.  STAR: an algorithm to Search for Tandem Approximate Repeats , 2004, Bioinform..

[11]  Michael Rodeh,et al.  Linear Algorithm for Data Compression via String Matching , 1981, JACM.

[12]  G. Benson,et al.  Tandem repeats finder: a program to analyze DNA sequences. , 1999, Nucleic acids research.

[13]  W. J. Thron,et al.  Encyclopedia of Mathematics and its Applications. , 1982 .

[14]  Gary Benson,et al.  TRDB—The Tandem Repeats Database , 2006, Nucleic Acids Res..

[15]  Gad M. Landau,et al.  Incremental String Comparison , 1998, SIAM J. Comput..

[16]  Gregory Kucherov,et al.  Finding Approximate Repetitions under Hamming Distance , 2001, ESA.

[17]  Gregory Kucherov,et al.  Finding maximal repetitions in a word in linear time , 1999, 40th Annual Symposium on Foundations of Computer Science (Cat. No.99CB37039).

[18]  Dan Geiger,et al.  Finding approximate tandem repeats in genomic sequences. , 2005, Journal of computational biology : a journal of computational molecular cell biology.

[19]  Gregory Kucherov,et al.  mreps: efficient and flexible detection of tandem repeats in DNA , 2003, Nucleic Acids Res..

[20]  Michael G. Main,et al.  An O(n log n) Algorithm for Finding All Repetitions in a String , 1984, J. Algorithms.