Recent challenges to the psychiatric diagnostic nosology: a focus on the genetics and genomics of neurodevelopmental disorders.

Recent advances in the genetics of neurodevelopmental disorder (NDD) have demonstrated that rare mutations play a role not only in Mendelian syndromes, but in complex, common forms of NDDs as well. Strikingly, both common polymorphisms and rare variations in a single gene or genetic locus have been found to carry risk for conditions previously considered to be clinically and aetiologically distinct. Recent developments in the methods and tools available for studying complex NDDs have led to systematic and reliable genome-wide variant discovery. Both common as well as rare, and structural as well as sequence, genetic variations have been identified as contributing to NDDs. There are multiple examples in which the identical variant had been found to contribute to a wide range of formerly distinct diagnoses, including autism, schizophrenia, epilepsy, intellectual disability and language disorders. These include variations in chromosomal structure at 16p11.2, rare de novo point mutations at the gene SCN2A, and common single nucleotide polymorphisms (SNPs) mapping near loci encoding the genes ITIH3, AS3MT, CACNA1C and CACNB2. These selected examples point to the challenges to current diagnostic approaches. Widely used categorical schema have been adequate to provide an entré into molecular mechanisms of NDDs, but there is a need to develop an alternative, more biologically-relevant nosology. Thus recent advances in gene discovery in the area of NDDs are leading to a re-conceptualization of diagnostic boundaries. Findings suggest that epidemiological samples may provide important new insights into the genetics and diagnosis of NDDs and that other areas of medicine may provide useful models for developing a new diagnostic nosology, one that simultaneously integrates categorical diagnoses, biomarkers and dimensional variables.

[1]  M. Pirinen,et al.  Common variant at 16p11.2 conferring risk of psychosis , 2014, Molecular Psychiatry.

[2]  Wei Niu,et al.  Coexpression Networks Implicate Human Midfetal Deep Cortical Projection Neurons in the Pathogenesis of Autism , 2013, Cell.

[3]  W. Carpenter RDoC and DSM-5: what's the fuss? , 2013, Schizophrenia bulletin.

[4]  Jianxin Shi,et al.  Genetic relationship between five psychiatric disorders estimated from genome-wide SNPs , 2013, Nature Genetics.

[5]  Stephan J Sanders,et al.  High rate of disease-related copy number variations in childhood onset schizophrenia , 2013, Molecular Psychiatry.

[6]  M. Daly,et al.  Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis , 2013, The Lancet.

[7]  Andres Metspalu,et al.  Rare Genomic Structural Variants in Complex Disease: Lessons from the Replication of Associations with Obesity , 2013, PloS one.

[8]  J. Sebat,et al.  Implication of a rare deletion at distal 16p11.2 in schizophrenia. , 2013, JAMA psychiatry.

[9]  Eric M. Morrow,et al.  Using Whole-Exome Sequencing to Identify Inherited Causes of Autism , 2013, Neuron.

[10]  B. Mowry,et al.  The emerging spectrum of allelic variation in schizophrenia: current evidence and strategies for the identification and functional characterization of common and rare variants , 2013, Molecular Psychiatry.

[11]  De novo mutations in epileptic encephalopathies , 2013 .

[12]  Lilia M. Iakoucheva,et al.  Whole-Genome Sequencing in Autism Identifies Hot Spots for De Novo Germline Mutation , 2012, Cell.

[13]  Robert A Harris,et al.  Mutations in BCKD-kinase Lead to a Potentially Treatable Form of Autism with Epilepsy , 2012, Science.

[14]  S. Levy,et al.  De novo gene mutations highlight patterns of genetic and neural complexity in schizophrenia , 2012, Nature Genetics.

[15]  Allison G. Dempsey,et al.  A 600 kb deletion syndrome at 16p11.2 leads to energy imbalance and neuropsychiatric disorders , 2012, Journal of Medical Genetics.

[16]  S. Steinberg,et al.  Rate of de novo mutations and the importance of father’s age to disease risk , 2012, Nature.

[17]  Kenny Q. Ye,et al.  De Novo Gene Disruptions in Children on the Autistic Spectrum , 2012, Neuron.

[18]  Michael F. Walker,et al.  De novo mutations revealed by whole-exome sequencing are strongly associated with autism , 2012, Nature.

[19]  Evan T. Geller,et al.  Patterns and rates of exonic de novo mutations in autism spectrum disorders , 2012, Nature.

[20]  The Simons,et al.  Simons Variation in Individuals Project (Simons VIP): A Genetics-First Approach to Studying Autism Spectrum and Related Neurodevelopmental Disorders , 2012, Neuron.

[21]  J. Sebat,et al.  CNVs: Harbingers of a Rare Variant Revolution in Psychiatric Genetics , 2012, Cell.

[22]  D. Conrad,et al.  Independent estimation of the frequency of rare CNVs in the UK population confirms their role in schizophrenia , 2012, Schizophrenia Research.

[23]  Bradley P. Coe,et al.  Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations , 2012, Nature.

[24]  Pat Levitt,et al.  The conundrums of understanding genetic risks for autism spectrum disorders , 2011, Nature Neuroscience.

[25]  P. Elliott,et al.  Mirror extreme BMI phenotypes associated with gene dosage at the chromosome 16p11.2 locus , 2011, Nature.

[26]  Y. S. Kim,et al.  Prevalence of autism spectrum disorders in a total population sample. , 2011, The American journal of psychiatry.

[27]  Kathryn Roeder,et al.  Multiple Recurrent De Novo CNVs, Including Duplications of the 7q11.23 Williams Syndrome Region, Are Strongly Associated with Autism , 2011, Neuron.

[28]  K. Roeder,et al.  Do common variants play a role in risk for autism? Evidence and theoretical musings , 2011, Brain Research.

[29]  Jianxin Shi,et al.  Copy number variants in schizophrenia: confirmation of five previous findings and new evidence for 3q29 microdeletions and VIPR2 duplications. , 2011, The American journal of psychiatry.

[30]  Mark F Bear,et al.  Toward fulfilling the promise of molecular medicine in fragile X syndrome. , 2011, Annual review of medicine.

[31]  J. Potash,et al.  Novel loci for major depression identified by genome-wide association study of STAR*D and meta-analysis of three studies , 2009, Molecular Psychiatry.

[32]  M. State,et al.  Progress in cytogenetics: implications for child psychopathology. , 2010, Journal of the American Academy of Child and Adolescent Psychiatry.

[33]  R. Reading,et al.  Clinical genetic testing for patients with autism spectrum disorders , 2010 .

[34]  T. Insel,et al.  Wesleyan University From the SelectedWorks of Charles A . Sanislow , Ph . D . 2010 Research Domain Criteria ( RDoC ) : Toward a New Classification Framework for Research on Mental Disorders , 2018 .

[35]  Sharyn A. Lincoln,et al.  Clinical Genetic Testing for Patients With Autism Spectrum Disorders , 2010, Pediatrics.

[36]  M. Hurles,et al.  Large, rare chromosomal deletions associated with severe early-onset obesity , 2010, Nature.

[37]  E. K. Bijlsmaa,et al.  Extending the phenotype of recurrent rearrangements of 16p11.2: deletions in mentally retarded patients without autism and in normal individuals , 2010 .

[38]  Jessica R. Wolff,et al.  Microduplications of 16p11.2 are Associated with Schizophrenia , 2009, Nature Genetics.

[39]  P. Howlin,et al.  Autism spectrum disorders in genetic syndromes: implications for diagnosis, intervention and understanding the wider autism spectrum disorder population. , 2009, Journal of intellectual disability research : JIDR.

[40]  Deborah A Nickerson,et al.  A method for rapid, targeted CNV genotyping identifies rare variants associated with neurocognitive disease. , 2009, Genome research.

[41]  Robert T. Schultz,et al.  Autism genome-wide copy number variation reveals ubiquitin and neuronal genes , 2009, Nature.

[42]  J. Stockman Association between Microdeletion and Microduplication at 16p11.2 and Autism , 2009 .

[43]  Teri A Manolio,et al.  Cohort studies and the genetics of complex disease , 2009, Nature Genetics.

[44]  R. Collins,et al.  Common variants at 30 loci contribute to polygenic dyslipidemia , 2009, Nature Genetics.

[45]  Christian Gieger,et al.  Loci influencing lipid levels and coronary heart disease risk in 16 European population cohorts , 2009, Nature Genetics.

[46]  C. Hoggart,et al.  Genome-wide association analysis of metabolic traits in a birth cohort from a founder population , 2008, Nature Genetics.

[47]  G. Fein,et al.  Treatment-naive active alcoholics have greater psychiatric comorbidity than normal controls but less than treated abstinent alcoholics. , 2008, Drug and alcohol dependence.

[48]  Eric M. Morrow,et al.  Identifying Autism Loci and Genes by Tracing Recent Shared Ancestry , 2008, Science.

[49]  D. Pinto,et al.  Structural variation of chromosomes in autism spectrum disorder. , 2008, American journal of human genetics.

[50]  D. Conrad,et al.  Recurrent 16p11.2 microdeletions in autism. , 2007, Human molecular genetics.

[51]  S. Hyman Can neuroscience be integrated into the DSM-V? , 2007, Nature Reviews Neuroscience.

[52]  Kenny Q. Ye,et al.  Strong Association of De Novo Copy Number Mutations with Autism , 2007, Science.

[53]  J. Constantino,et al.  Intergenerational transmission of subthreshold autistic traits in the general population , 2005, Biological Psychiatry.

[54]  M. Yeargin-Allsopp,et al.  Overview: the epidemiology of neurodevelopmental disorders. , 2002, Mental retardation and developmental disabilities research reviews.

[55]  M. Rutter,et al.  Quasi-autistic patterns following severe early global privation. English and Romanian Adoptees (ERA) Study Team. , 1999, Journal of child psychology and psychiatry, and allied disciplines.

[56]  J. Rashbass Online Mendelian Inheritance in Man. , 1995, Trends in genetics : TIG.

[57]  M. Fink ECT in Schizophrenia. , 1987, Convulsive therapy.

[58]  J BERKSON,et al.  Limitations of the application of fourfold table analysis to hospital data. , 1946, Biometrics.