Ancient hybridization and strong adaptation to viruses across African vervet monkey populations
暂无分享,去创建一个
R. Wilson | M. Nordborg | W. Warren | V. Ramensky | Ken Dewar | C. Apetrei | H. Svardal | A. Jasinska | Yu S. Huang | C. Schmitt | B. Jacquelin | M. Müller-Trutwin | T. Turner | M. Antonio | J. P. Grobler | G. Weinstock | N. Freimer | Giovanni Coppola
[1] R. Wilson,et al. Publisher Correction: Ancient hybridization and strong adaptation to viruses across African vervet monkey populations , 2018, Nature Genetics.
[2] S. Pfeifer,et al. The demographic and adaptive history of the African green monkey , 2017, bioRxiv.
[3] André L. Martins,et al. Natural Selection has Shaped Coding and Non-coding Transcription in Primate CD4+ T-cells , 2016, bioRxiv.
[4] J. Kelso,et al. Genetic Adaptation and Neandertal Admixture Shaped the Immune System of Human Populations , 2016, Cell.
[5] J. Sese,et al. Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism , 2016, Nature Genetics.
[6] K. Dewar,et al. Envelope-specific B-cell populations in African green monkeys chronically infected with simian immunodeficiency virus , 2016, Nature Communications.
[7] Shu-wen Liu,et al. Heat Shock Factor 1 Mediates Latent HIV Reactivation , 2016, Scientific Reports.
[8] J. Lifson,et al. Rapid Inflammasome Activation following Mucosal SIV Infection of Rhesus Monkeys , 2016, Cell.
[9] Brian L Browning,et al. Genotype Imputation with Millions of Reference Samples. , 2016, American journal of human genetics.
[10] James Mallet,et al. How reticulated are species? , 2015, BioEssays : news and reviews in molecular, cellular and developmental biology.
[11] D. Petrov,et al. Viruses are a dominant driver of protein adaptation in mammals , 2015, bioRxiv.
[12] K. Zeng,et al. Investigation Title : The effects of background and interference selection on patterns of genetic variation in subdivided populations , 2015 .
[13] R. Wilson,et al. Sequencing strategies and characterization of 721 vervet monkey genomes for future genetic analyses of medically relevant traits , 2015, BMC Biology.
[14] N. Freimer,et al. Local Virus Extinctions following a Host Population Bottleneck , 2015, Journal of Virology.
[15] Guangfeng Song,et al. HIV-1, human interaction database: current status and new features , 2014, Nucleic Acids Res..
[16] L. Duret,et al. Comparative population genomics in animals uncovers the determinants of genetic diversity , 2014, Nature.
[17] F. Barré-Sinoussi,et al. Innate Immune Responses and Rapid Control of Inflammation in African Green Monkeys Treated or Not with Interferon-Alpha during Primary SIVagm Infection , 2014, PLoS pathogens.
[18] R. Durbin,et al. Inferring human population size and separation history from multiple genome sequences , 2014, Nature Genetics.
[19] H. Feldmann,et al. African Green Monkeys Recapitulate the Clinical Experience with Replication of Live Attenuated Pandemic Influenza Virus Vaccine Candidates , 2014, Journal of Virology.
[20] D. Douek,et al. Pathogenic Features Associated with Increased Virulence upon Simian Immunodeficiency Virus Cross-Species Transmission from Natural Hosts , 2014, Journal of Virology.
[21] R. Hernandez,et al. Live Attenuated Tetravalent Dengue Virus Host Range Vaccine Is Immunogenic in African Green Monkeys following a Single Vaccination , 2014, Journal of Virology.
[22] N. Freimer,et al. Factors Associated with Siman Immunodeficiency Virus Transmission in a Natural African Nonhuman Primate Host in the Wild , 2014, Journal of Virology.
[23] Nicolas Duforet-Frebourg,et al. Genome Scans for Detecting Footprints of Local Adaptation Using a Bayesian Factor Model , 2014, Molecular biology and evolution.
[24] K. Mansfield,et al. Frequent infection of neurons by SV40 virus in SIV-infected macaque monkeys with progressive multifocal leukoencephalopathy and meningoencephalitis. , 2013, The American journal of pathology.
[25] Jean-François Zagury,et al. Haplotype estimation using sequencing reads. , 2013, American journal of human genetics.
[26] Mauricio O. Carneiro,et al. From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline , 2013, Current protocols in bioinformatics.
[27] Arcadi Navarro,et al. Great ape genetic diversity and population history , 2013, Nature.
[28] Yan Zhou,et al. The role of Ran-binding protein 3 during influenza A virus replication. , 2013, The Journal of general virology.
[29] Laurent Excoffier,et al. Evidence for polygenic adaptation to pathogens in the human genome. , 2013, Molecular biology and evolution.
[30] L. Kozlovskaya,et al. Exploring of Primate Models of Tick-Borne Flaviviruses Infection for Evaluation of Vaccines and Drugs Efficacy , 2013, PloS one.
[31] Tongqing Zhou,et al. Somatic Mutations of the Immunoglobulin Framework Are Generally Required for Broad and Potent HIV-1 Neutralization , 2013, Cell.
[32] Heng Li. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM , 2013, 1303.3997.
[33] M. Hofreiter,et al. Mitochondrial Diversity and Distribution of African Green Monkeys (Chlorocebus Gray, 1870) , 2013, American journal of primatology.
[34] N. Freimer,et al. SIVagm Infection in Wild African Green Monkeys from South Africa: Epidemiology, Natural History, and Evolutionary Considerations , 2013, PLoS pathogens.
[35] J. Lifson,et al. Differential infection patterns of CD4+ T cells and lymphoid tissue viral burden distinguish progressive and nonprogressive lentiviral infections. , 2012, Blood.
[36] Swapan Mallick,et al. Ancient Admixture in Human History , 2012, Genetics.
[37] Kenny Q. Ye,et al. An integrated map of genetic variation from 1,092 human genomes , 2012, Nature.
[38] P. Andolfatto,et al. Revisiting an Old Riddle: What Determines Genetic Diversity Levels within Species? , 2012, PLoS biology.
[39] E. Major,et al. Molecular Biology, Epidemiology, and Pathogenesis of Progressive Multifocal Leukoencephalopathy, the JC Virus-Induced Demyelinating Disease of the Human Brain , 2012, Clinical Microbiology Reviews.
[40] H. Shida. Role of Nucleocytoplasmic RNA Transport during the Life Cycle of Retroviruses , 2012, Front. Microbio..
[41] Páll Melsted,et al. Comparative RNA sequencing reveals substantial genetic variation in endangered primates. , 2012, Genome research.
[42] David Reich,et al. Testing for ancient admixture between closely related populations. , 2011, Molecular biology and evolution.
[43] Gonçalo R. Abecasis,et al. The variant call format and VCFtools , 2011, Bioinform..
[44] S. Pryputniewicz,et al. Early Induction of Polyfunctional Simian Immunodeficiency Virus (SIV)-Specific T Lymphocytes and Rapid Disappearance of SIV from Lymph Nodes of Sooty Mangabeys during Primary Infection , 2011, The Journal of Immunology.
[45] M. DePristo,et al. A framework for variation discovery and genotyping using next-generation DNA sequencing data , 2011, Nature Genetics.
[46] V. Rybin,et al. Insights into the Function of the CRM1 Cofactor RanBP3 from the Structure of Its Ran-Binding Domain , 2011, PloS one.
[47] T. Butynski,et al. Three Sykes's Monkey Cercopithecus mitis × Vervet Monkey Chlorocebus pygerythrus Hybrids in Kenya , 2010 .
[48] David Reich,et al. Population differentiation as a test for selective sweeps. , 2010, Genome research.
[49] F. Barré-Sinoussi,et al. Nonpathogenic SIV infection of African green monkeys induces a strong but rapidly controlled type I IFN response. , 2009, The Journal of clinical investigation.
[50] David H. Alexander,et al. Fast model-based estimation of ancestry in unrelated individuals. , 2009, Genome research.
[51] G. Melikyan,et al. HIV Enters Cells via Endocytosis and Dynamin-Dependent Fusion with Endosomes , 2009, Cell.
[52] Steve Horvath,et al. WGCNA: an R package for weighted correlation network analysis , 2008, BMC Bioinformatics.
[53] Ryan D. Hernandez,et al. Demographic Histories and Patterns of Linkage Disequilibrium in Chinese and Indian Rhesus Macaques , 2007, Science.
[54] S. Horvath,et al. A General Framework for Weighted Gene Co-Expression Network Analysis , 2005, Statistical applications in genetics and molecular biology.
[55] D. Haussler,et al. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. , 2005, Genome research.
[56] Charles R. Brown,et al. Plateau Levels of Viremia Correlate with the Degree of CD4+-T-Cell Loss in Simian Immunodeficiency Virus SIVagm-Infected Pigtailed Macaques: Variable Pathogenicity of Natural SIVagm Isolates , 2005, Journal of Virology.
[57] Robert C. Edgar,et al. MUSCLE: a multiple sequence alignment method with reduced time and space complexity , 2004, BMC Bioinformatics.
[58] S. Salzberg,et al. Versatile and open software for comparing large genomes , 2004, Genome Biology.
[59] Y. Hakata,et al. A Multifunctional Domain in Human CRM1 (Exportin 1) Mediates RanBP3 Binding and Multimerization of Human T-Cell Leukemia Virus Type 1 Rex Protein , 2003, Molecular and Cellular Biology.
[60] E. Major,et al. Lineage pathway of human brain progenitor cells identified by JC virus susceptability , 2003, Annals of neurology.
[61] T. Rana,et al. A bimolecular mechanism of HIV-1 Tat protein interaction with RNA polymerase II transcription elongation complexes. , 2002, Journal of molecular biology.
[62] Carsten Schwarz,et al. Genomewide comparison of DNA sequences between humans and chimpanzees. , 2002, American journal of human genetics.
[63] K. Crandall,et al. Selecting the best-fit model of nucleotide substitution. , 2001, Systematic biology.
[64] C. Chappey,et al. Simian immunodeficiency viruses from central and western Africa: evidence for a new species-specific lentivirus in tantalus monkeys , 1993, Journal of virology.
[65] A. Koff,et al. Sequence-specific interactions between a cellular DNA-binding protein and the simian virus 40 origin of DNA replication , 1988, Molecular and cellular biology.
[66] Robert M. Seyfarth,et al. The recognition of social alliances by vervet monkeys , 1986, Animal Behaviour.
[67] B. Weir,et al. ESTIMATING F‐STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE , 1984, Evolution; international journal of organic evolution.
[68] P. Marler,et al. Vervet monkey alarm calls: Semantic communication in a free-ranging primate , 1980, Animal Behaviour.
[69] M. Hirai,et al. A case of patas-vervet hybrid in captivity , 1978, Primates.
[70] Christine B. Peterson,et al. Genetic variation and gene expression across multiple tissues and developmental stages in a nonhuman primate. , 2016 .
[71] Trey Ideker,et al. Cytoscape: the network visualization tool for GenomeSpace workflows , 2014, F1000Research.
[72] N. Freimer,et al. Systems biology of the vervet monkey. , 2013, ILAR journal.
[73] R. Johnson,et al. Sooty mangabeys and rhesus macaques exhibit significant divergent natural killer cell responses during both acute and chronic phases of SIV infection. , 2008, Cellular immunology.
[74] H. Kishino,et al. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA , 2005, Journal of Molecular Evolution.