DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis

UNLABELLED DnaSP is a Windows integrated software package for the analysis of the DNA polymorphism from nucleotide sequence data. DnaSP version 3 incorporates several methods for estimating the amount and pattern of DNA polymorphism and divergence, and for conducting neutrality tests. AVAILABILITY For academic uses, DnaSP is available free of charge from: http://www.bio.ub.es/julio/DnaSP.html CONTACT julio@porthos.bio.ub.es

[1]  M. Nei,et al.  Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. , 1986, Molecular biology and evolution.

[2]  F. Tajima.  Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. , 1989, Genetics.

[3]  T. Jukes,et al.  The neutral theory of molecular evolution. , 2000, Genetics.

[4]  H. Harpending,et al.  Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. , 1994, Human biology.

[5]  J. McDonald,et al.  Detecting non-neutral heterogeneity across a region of DNA sequence in the ratio of polymorphism to divergence. , 1996, Molecular biology and evolution.

[6]  R. Hudson.  Gene genealogies and the coalescent process. , 1990 .

[7]  W. Li,et al.  Statistical tests of neutrality of mutations. , 1993, Genetics.

[8]  M. Kreitman,et al.  Adaptive protein evolution at the Adh locus in Drosophila , 1991, Nature.

[9]  M. Nei.  Molecular Evolutionary Genetics , 1987 .

[10]  Julio Rozas,et al.  DnaSP, DNA sequence polymorphism: an interactive program for estimating population genetics parameters from DNA sequence data , 1995, Comput. Appl. Biosci..

[11]  R. Hudson,et al.  A test of neutral molecular evolution based on nucleotide data. , 1987, Genetics.

[12]  F. Tajima.  The effect of change in population size on DNA polymorphism. , 1989, Genetics.

[13]  M. Slatkin,et al.  Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. , 1991, Genetics.

[14]  J. McDonald,et al.  Improved tests for heterogeneity across a region of DNA sequence in the ratio of polymorphism to divergence. , 1998, Molecular biology and evolution.

[15]  H. Harpending,et al.  Population growth makes waves in the distribution of pairwise genetic differences. , 1992, Molecular biology and evolution.

[16]  Julio Rozas,et al.  DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis , 1997, Comput. Appl. Biosci..