Reconstructing Curvilinear Networks Using Path Classifiers and Integer Programming
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Pascal Fua | Hanspeter Pfister | Engin Türetken | Fethallah Benmansour | Björn Andres | Przemyslaw Glowacki | P. Fua | H. Pfister | Björn Andres | Fethallah Benmansour | Engin Türetken | P. Glowacki | Przemyslaw Glowacki
[1] Rangasami L. Kashyap,et al. Building Skeleton Models via 3-D Medial Surface/Axis Thinning Algorithms , 1994, CVGIP Graph. Model. Image Process..
[2] Amit Mukherjee,et al. Automated reconstruction of neural trees using front re-initialization , 2012, Medical Imaging.
[3] David Mayerich,et al. NetMets: software for quantifying and visualizing errors in biological network segmentation , 2012, BMC Bioinformatics.
[4] Erik Meijering,et al. Neuron tracing in perspective , 2010, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[5] Johannes E. Schindelin,et al. TrakEM2 Software for Neural Circuit Reconstruction , 2012, PloS one.
[6] Max W. K. Law,et al. An Oriented Flux Symmetry Based Active Contour Model for Three Dimensional Vessel Segmentation , 2010, ECCV.
[7] Pascal Fua,et al. Semi-Automated Reconstruction of Curvilinear Structures in Noisy 2D images and 3D image stacks , 2013 .
[8] Armen Stepanyants,et al. Detection of the optimal neuron traces in confocal microscopy images , 2009, Journal of Neuroscience Methods.
[9] Pascal Fua,et al. Reconstructing Loopy Curvilinear Structures Using Integer Programming , 2013, 2013 IEEE Conference on Computer Vision and Pattern Recognition.
[10] Changming Sun,et al. HCA-Vision , 2010, Journal of biomolecular screening.
[11] Ju Lu,et al. Neuronal Tracing for Connectomic Studies , 2011, Neuroinformatics.
[12] L. Gouveia,et al. Models and heuristics for a minimum arborescence problem , 2008 .
[13] Pascal Fua,et al. Making Action Recognition Robust to Occlusions and Viewpoint Changes , 2010, ECCV.
[14] Max A. Viergever,et al. Ridge-based vessel segmentation in color images of the retina , 2004, IEEE Transactions on Medical Imaging.
[15] E Meijering,et al. Design and validation of a tool for neurite tracing and analysis in fluorescence microscopy images , 2004, Cytometry. Part A : the journal of the International Society for Analytical Cytology.
[16] Chia-Ling Tsai,et al. A Broadly Applicable 3-D Neuron Tracing Method Based on Open-Curve Snake , 2011, Neuroinformatics.
[17] Vivek Mehta,et al. Automated Tracing of Neurites from Light Microscopy Stacks of Images , 2011, Neuroinformatics.
[18] Giorgio A. Ascoli,et al. Automated reconstruction of neuronal morphology: An overview , 2011, Brain Research Reviews.
[19] Hausser Michael,et al. One rule to grow them all: A general theory of neuronal branching and its practical application , 2010 .
[20] Bunyarit Uyyanonvara,et al. Blood vessel segmentation methodologies in retinal images - A survey , 2012, Comput. Methods Programs Biomed..
[21] Deniz Erdogmus,et al. Principal Curves as Skeletons of Tubular Objects , 2011, Neuroinformatics.
[22] Anthony J. Yezzi,et al. Vessels as 4-D Curves: Global Minimal 4-D Paths to Extract 3-D Tubular Surfaces and Centerlines , 2007, IEEE Transactions on Medical Imaging.
[23] Changming Sun,et al. Linear Feature Detection on GPUs , 2010, 2010 International Conference on Digital Image Computing: Techniques and Applications.
[24] Alex M. Andrew,et al. Level Set Methods and Fast Marching Methods: Evolving Interfaces in Computational Geometry, Fluid Mechanics, Computer Vision, and Materials Science (2nd edition) , 2000 .
[25] M. Elena Martinez-Perez,et al. A method for semiautomatic tracing and morphological measuring of neurite outgrowth from DIC sequences , 2008, 2008 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society.
[26] Eugene W. Myers,et al. Automatic 3D neuron tracing using all-path pruning , 2011, Bioinform..
[27] Giorgio A. Ascoli,et al. A cross-platform freeware tool for digital reconstruction of neuronal arborizations from image stacks , 2007, Neuroinformatics.
[28] Richard Szeliski,et al. Multi-image matching using multi-scale oriented patches , 2005, 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05).
[29] J C Fiala,et al. Reconstruct: a free editor for serial section microscopy , 2005, Journal of microscopy.
[30] Max W. K. Law,et al. Three Dimensional Curvilinear Structure Detection Using Optimally Oriented Flux , 2008, ECCV.
[31] J. Douglas Armstrong,et al. Bioinformatics Applications Note Systems Biology Simple Neurite Tracer: Open Source Software for Reconstruction, Visualization and Analysis of Neuronal Processes , 2022 .
[32] Eugene W. Myers,et al. Proof-editing is the Bottleneck Of 3D Neuron Reconstruction: The Problem and Solutions , 2011, Neuroinformatics.
[33] Khalid A. Al-Kofahi,et al. Rapid automated three-dimensional tracing of neurons from confocal image stacks , 2002, IEEE Transactions on Information Technology in Biomedicine.
[34] Hanchuan Peng,et al. APP2: automatic tracing of 3D neuron morphology based on hierarchical pruning of a gray-weighted image distance-tree , 2013, Bioinform..
[35] Douglas B. Ehlenberger,et al. New techniques for imaging, digitization and analysis of three-dimensional neural morphology on multiple scales , 2005, Neuroscience.
[36] Ioannis A. Kakadiaris,et al. Automatic Reconstruction of Dendrite Morphology from Optical Section Stacks , 2006, CVAMIA.
[37] Pascal Fua,et al. Automated Reconstruction of Dendritic and Axonal Trees by Global Optimization with Geometric Priors , 2011, Neuroinformatics.
[38] Shih-Fu Chang,et al. Automatic Reconstruction of Neural Morphologies with Multi-Scale Tracking , 2012, Front. Neural Circuits.
[39] R. W. Draft,et al. Transgenic strategies for combinatorial expression of fluorescent proteins in the nervous system , 2007, Nature.
[40] Bill Triggs,et al. Histograms of oriented gradients for human detection , 2005, 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05).
[41] Eugene W. Myers,et al. Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models , 2011, Neuroinformatics.
[42] Hong Shen,et al. Rapid automated tracing and feature extraction from retinal fundus images using direct exploratory algorithms , 1999, IEEE Transactions on Information Technology in Biomedicine.
[43] Xiaobo Zhou,et al. Reconstruction of the neuromuscular junction connectome , 2010, Bioinform..
[44] Jan Dirk Wegner,et al. A Higher-Order CRF Model for Road Network Extraction , 2013, 2013 IEEE Conference on Computer Vision and Pattern Recognition.
[45] Badrinath Roysam,et al. 3-D Image Pre-processing Algorithms for Improved Automated Tracing of Neuronal Arbors , 2011, Neuroinformatics.
[46] Tianxu Zhang,et al. Marked Point Process for Vascular Tree Extraction on Angiogram , 2007, EMMCVPR.
[47] Attila Kuba,et al. A 3D 6-subiteration thinning algorithm for extracting medial lines , 1998, Pattern Recognit. Lett..
[48] Jing Xu,et al. DSA Image Blood Vessel Skeleton Extraction Based on Anti-concentration Diffusion and Level Set Method , 2009 .
[49] Pascal Fua,et al. Automated reconstruction of tree structures using path classifiers and Mixed Integer Programming , 2012, 2012 IEEE Conference on Computer Vision and Pattern Recognition.
[50] Martin A. Fischler,et al. Detection of roads and linear structures in low-resolution aerial imagery using a multisource knowledge integration technique☆ , 1981 .
[51] Badrinath Roysam,et al. Novel 4-D Open-Curve Active Contour and curve completion approach for automated tree structure extraction , 2011, CVPR 2011.
[52] David A. McAllester,et al. Object Detection with Discriminatively Trained Part Based Models , 2010, IEEE Transactions on Pattern Analysis and Machine Intelligence.
[53] Hanchuan Peng,et al. Automatic reconstruction of 3D neuron structures using a graph-augmented deformable model , 2010, Bioinform..
[54] Thomas Stützle,et al. Ant Colony Optimization , 2009, EMO.
[55] Laurent D. Cohen,et al. Tubular Structure Segmentation Based on Minimal Path Method and Anisotropic Enhancement , 2011, International Journal of Computer Vision.
[56] Stephen T. C. Wong,et al. Repulsive force based snake model to segment and track neuronal axons in 3D microscopy image stacks , 2006, NeuroImage.
[57] R. S. Stoica,et al. Detecting filamentary pattern in the cosmic web: a catalogue of filaments for the SDSS , 2013, 1308.2533.
[58] Emanuele Trucco,et al. Robust optic disc location via combination of weak detectors , 2008, 2008 30th Annual International Conference of the IEEE Engineering in Medicine and Biology Society.
[59] Marco Dorigo. Ant colony optimization , 2004, Scholarpedia.
[60] Richard I. Hartley,et al. Tracking of Blood Vessels in Retinal Images Using Kalman Filter , 2008, 2008 Digital Image Computing: Techniques and Applications.
[61] Hanchuan Peng,et al. V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets , 2010, Nature Biotechnology.
[62] Pascal Fua,et al. Detecting Irregular Curvilinear Structures in Gray Scale and Color Imagery Using Multi-directional Oriented Flux , 2013, 2013 IEEE International Conference on Computer Vision.
[63] M. Pool,et al. NeuriteTracer: A novel ImageJ plugin for automated quantification of neurite outgrowth , 2008, Journal of Neuroscience Methods.
[64] W. Brent Lindquist,et al. Automated Algorithms for Multiscale Morphometry of Neuronal Dendrites , 2004, Neural Computation.
[65] Slawomir J. Nasuto,et al. Neuromantic – from Semi-Manual to Semi-Automatic Reconstruction of Neuron Morphology , 2012, Front. Neuroinform..