Biodegradation of asphaltenes by an indigenous bioemulsifier-producing Pseudomonas stutzeri YWX-1 from shale oil in the Ordos Basin: Biochemical characterization and complete genome analysis.

[1]  Yuanyuan Xu,et al.  Insight into bacterial community profiles of oil shale and sandstone in ordos basin by culture-dependent and culture-independent methods , 2022, Journal of environmental science and health. Part A, Toxic/hazardous substances & environmental engineering.

[2]  Yiming Li,et al.  Efficient biodegradation of phenanthrene using Pseudomonas stutzeri LSH-PAH1 with the addition of sophorolipids: Alleviation of biotoxicity and cometabolism studies. , 2022, Environmental pollution.

[3]  A. A. Woldesemayat,et al.  Isolation and Characterization of Diesel-Degrading Bacteria from Hydrocarbon-Contaminated Sites, Flower Farms, and Soda Lakes , 2022, International journal of microbiology.

[4]  M. Kumar,et al.  Asphaltene biotransformation for heavy oil upgradation , 2021, AMB Express.

[5]  Hui Wang,et al.  Aerobic and Anaerobic Bacterial and Fungal Degradation of Pyrene: Mechanism Pathway Including Biochemical Reaction and Catabolic Genes , 2021, International journal of molecular sciences.

[6]  S. Ghoshal,et al.  Salt selected for hydrocarbon-degrading bacteria and enhanced hydrocarbon biodegradation in slurry bioreactors. , 2021, Water research.

[7]  You-Shao Wang,et al.  Fluorene degradation by Rhodococcus sp. A2-3 isolated from hydrocarbon contaminated sediment of the Pearl River estuary, China , 2021, Ecotoxicology.

[8]  H. Vali,et al.  New Provisional Function of OmpA from Acinetobacter sp. Strain SA01 Based on Environmental Challenges , 2021, mSystems.

[9]  J. Domínguez,et al.  Experimental and Theoretical Approach To Determine the Average Asphaltene Structure of a Crude Oil from the Golden Lane (Faja de Oro) of Mexico , 2020, Energy & Fuels.

[10]  Leiyu Feng,et al.  Application of alkyl polyglycosides for enhanced bioremediation of petroleum hydrocarbon-contaminated soil using Sphingomonas changbaiensis and Pseudomonas stutzeri. , 2020, The Science of the total environment.

[11]  Y. Ma,et al.  Elucidation of multiple alkane hydroxylase systems in biodegradation of crude oil n‐alkane pollution by Pseudomonas aeruginosa DN1 , 2020, Journal of applied microbiology.

[12]  Weiqi Wang,et al.  Biodegradation of aliphatic and polycyclic aromatic hydrocarbons by the thermophilic bioemulsifier-producing Aeribacillus pallidus strain SL-1. , 2019, Ecotoxicology and environmental safety.

[13]  M. Jiang,et al.  High Di-rhamnolipid Production Using Pseudomonas aeruginosa KT1115, Separation of Mono/Di-rhamnolipids, and Evaluation of Their Properties , 2019, Front. Bioeng. Biotechnol..

[14]  Juan C. Cruz,et al.  Insights into the behavior of six rationally designed peptides based on Escherichia coli’s OmpA at the water-dodecane interface , 2019, PloS one.

[15]  D. Cowan,et al.  The genome of Alcaligenes aquatilis strain BU33N: Insights into hydrocarbon degradation capacity , 2019, PloS one.

[16]  D. Chattopadhyay,et al.  Hydrocarbon degradation potential and competitive persistence of hydrocarbonoclastic bacterium Acinetobacter pittii strain ABC , 2019, Archives of Microbiology.

[17]  Ren-qing Wang,et al.  Characterization and Initial Application of Endophytic Bacillus safensis Strain ZY16 for Improving Phytoremediation of Oil-Contaminated Saline Soils , 2019, Front. Microbiol..

[18]  Camilo A. Franco,et al.  Immobilization of P. stutzeri on Activated Carbons for Degradation of Hydrocarbons from Oil-in-Saltwater Emulsions , 2019, Nanomaterials.

[19]  S. Net,et al.  Degradation of fluorene and phenanthrene in PAHs-contaminated soil using Pseudomonas and Bacillus strains isolated from oil spill sites. , 2019, Journal of environmental management.

[20]  H. Moghimi,et al.  Evaluation of heavy petroleum degradation using bacterial-fungal mixed cultures. , 2018, Ecotoxicology and environmental safety.

[21]  Fulin Chen,et al.  Genome Sequence and Metabolic Analysis of a Fluoranthene-Degrading Strain Pseudomonas aeruginosa DN1 , 2018, Front. Microbiol..

[22]  Sudhir Kumar,et al.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. , 2018, Molecular biology and evolution.

[23]  A. Saboury,et al.  Biodegradation of asphaltene and petroleum compounds by a highly potent Daedaleopsis sp. , 2018, Journal of basic microbiology.

[24]  He Huang,et al.  Characterization of a novel bioemulsifier from Pseudomonas stutzeri , 2017, World journal of microbiology & biotechnology.

[25]  S. Koren,et al.  Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation , 2016, bioRxiv.

[26]  J. Chun,et al.  OrthoANI: An improved algorithm and software for calculating average nucleotide identity. , 2016, International journal of systematic and evolutionary microbiology.

[27]  M. Ayala,et al.  Microbial and Enzymatic Biotransformations of Asphaltenes , 2015 .

[28]  B. Lal,et al.  Potential of viscosity reducing thermophillic anaerobic bacterial consortium TERIB#90 in upgrading heavy oil , 2015 .

[29]  M. R. Grimes,et al.  Indirect Method: A Novel Technique for Experimental Determination of Asphaltene Precipitation , 2015 .

[30]  S. Tachibana,et al.  Potential of fungal co-culturing for accelerated biodegradation of petroleum hydrocarbons in soil. , 2014, Journal of Hazardous Materials.

[31]  L. Gieg,et al.  Syntrophic biodegradation of hydrocarbon contaminants. , 2014, Current opinion in biotechnology.

[32]  S. Tachibana,et al.  Enhanced biodegradation of asphalt in the presence of Tween surfactants, Mn(2+) and H2O2 by Pestalotiopsis sp. in liquid medium and soil. , 2014, Chemosphere.

[33]  R. Zhang,et al.  Characterization and emulsifying property of a novel bioemulsifier by Aeribacillus pallidus YM‐1 , 2012, Journal of applied microbiology.

[34]  K. Chandrasekhar,et al.  Aerobic remediation of petroleum sludge through soil supplementation: microbial community analysis. , 2011, Journal of hazardous materials.

[35]  Marcela Ayala,et al.  First evidence of mineralization of petroleum asphaltenes by a strain of Neosartorya fischeri , 2011, Microbial biotechnology.

[36]  O. Mullins The asphaltenes. , 2011, Annual review of analytical chemistry.

[37]  Steven Salzberg,et al.  Identifying bacterial genes and endosymbiont DNA with Glimmer , 2007, Bioinform..

[38]  K. Akbarzadeh,et al.  Asphaltenes — Problematic but Rich in Potential , 2007 .

[39]  E. Ron,et al.  The Acinetobacter outer membrane protein A (OmpA) is a secreted emulsifier. , 2006, Environmental microbiology.

[40]  Manoj Kumar,et al.  Biological upgrading of heavy crude oil , 2005 .

[41]  Eduardo Buenrostro-Gonzalez,et al.  Biocatalytic transformation of petroporphyrins by chemical modified cytochrome C , 2004, Biotechnology and bioengineering.

[42]  D. Gutnick,et al.  Involvement of a Protein Tyrosine Kinase in Production of the Polymeric Bioemulsifier Emulsan from the Oil-Degrading Strain Acinetobacter lwoffii RAG-1 , 2003, Journal of bacteriology.

[43]  E. Ron,et al.  The Active Component of the Bioemulsifier Alasan from Acinetobacter radioresistens KA53 Is an OmpA-Like Protein , 2002, Journal of bacteriology.

[44]  D. Gutnick,et al.  Analysis of the wee gene cluster responsible for the biosynthesis of the polymeric bioemulsifier from the oil-degrading strain Acinetobacter lwoffii RAG-1. , 2001, Microbiology.

[45]  Marguerita Sasser,et al.  Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids Technical Note # 101 , 2001 .

[46]  A. Bechthold,et al.  Genes and enzymes involved in deoxysugar biosynthesis in bacteria. , 1999, Natural product reports.

[47]  R. Torres,et al.  Biocatalytic removal of nickel and vanadium from petroporphyrins and asphaltenes , 1998, Applied biochemistry and biotechnology.

[48]  K. van Pée,et al.  Chloroperoxidase-encoding gene from Pseudomonas pyrrocinia: sequence, expression in heterologous hosts, and purification of the enzyme. , 1993, Gene.

[49]  K. Semple,et al.  Chloroperoxidase-mediated modifications of petroporphyrins and asphaltenes , 1993 .

[50]  J. Pendrys Biodegradation of Asphalt Cement-20 by Aerobic Bacteria , 1989, Applied and environmental microbiology.

[51]  S. T. Cowan Bergey's Manual of Determinative Bacteriology , 1948, Nature.