Identification of key genes by integrating DNA methylation and next-generation transcriptome sequencing for esophageal squamous cell carcinoma
暂无分享,去创建一个
E. Li | Li-Yan Xu | Zhiyong Wu | Jian-yi Wu | D. Lin | Lian-di Liao | Yang Chen | Qian Yang | Shao-hong Wang | Xiue Xu | Feng Pan | Jin-Cheng Guo | Jianzhong He | Jianzhong He | Jianzhong He | E. Li
[1] E. Li,et al. CNIT: a fast and accurate web tool for identifying protein-coding and long non-coding transcripts based on intrinsic sequence composition , 2019, Nucleic Acids Res..
[2] M. Bebawy,et al. Circulating tumor DNA - Current state of play and future perspectives. , 2018, Pharmacological research.
[3] B. Berman,et al. Co-activation of super-enhancer-driven CCAT1 by TP63 and SOX2 promotes squamous cancer progression , 2018, Nature Communications.
[4] Y. Dor,et al. Principles of DNA methylation and their implications for biology and medicine , 2018, The Lancet.
[5] Guoying Miao,et al. MFAP2 promotes epithelial–mesenchymal transition in gastric cancer cells by activating TGF-β/SMAD2/3 signaling pathway , 2018, OncoTargets and therapy.
[6] Tim De Meyer,et al. Analysis of DNA methylation in cancer: location revisited , 2018, Nature Reviews Clinical Oncology.
[7] A. Topaloğlu,et al. Molecular genetic studies in a case series of isolated hypoaldosteronism due to biosynthesis defects or aldosterone resistance , 2018, Clinical endocrinology.
[8] E. Li,et al. Protein-coding genes combined with long noncoding RNA as a novel transcriptome molecular staging model to predict the survival of patients with esophageal squamous cell carcinoma , 2018, Cancer communications.
[9] W. Wang,et al. SLC52A3 expression is activated by NF-κB p65/Rel-B and serves as a prognostic biomarker in esophageal cancer , 2018, Cellular and Molecular Life Sciences.
[10] B. Berman,et al. Identification of distinct mutational patterns and new driver genes in oesophageal squamous cell carcinomas and adenocarcinomas , 2017, Gut.
[11] Ming-Rong Wang,et al. Genomic and Epigenomic Aberrations in Esophageal Squamous Cell Carcinoma and Implications for Patients. , 2017, Gastroenterology.
[12] S. Ikeda,et al. Genomic Alterations in Circulating Tumor DNA from Diverse Cancer Patients Identified by Next-Generation Sequencing. , 2017, Cancer research.
[13] T. Ushijima,et al. How to stomach an epigenetic insult: the gastric cancer epigenome , 2017, Nature Reviews Gastroenterology &Hepatology.
[14] Michael Q. Zhang,et al. Recurrently deregulated lncRNAs in hepatocellular carcinoma , 2017, Nature Communications.
[15] E. Li,et al. Integrative analyses of transcriptome sequencing identify novel functional lncRNAs in esophageal squamous cell carcinoma , 2017, Oncogenesis.
[16] F. Setién,et al. Epigenetic inactivation of the p53-induced long noncoding RNA TP53 target 1 in human cancer , 2016, Proceedings of the National Academy of Sciences.
[17] Jingting Jiang,et al. Assessment of Lymph Node Ratio to Replace the pN Categories System of Classification of the TNM System in Esophageal Squamous Cell Carcinoma , 2016, Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer.
[18] Kongming Wu,et al. The DACH/EYA/SIX gene network and its role in tumor initiation and progression , 2016, International journal of cancer.
[19] William M. Grady,et al. Epigenetic Alterations in Colorectal Cancer: Emerging Biomarkers. , 2015, Gastroenterology.
[20] W. Liang,et al. Whole-genome bisulfite sequencing of cell-free DNA identifies signature associated with metastatic breast cancer , 2015, Clinical Epigenetics.
[21] L. Kananen,et al. Transcriptomic and epigenetic analyses reveal a gender difference in aging-associated inflammation: the Vitality 90+ study , 2015, AGE.
[22] David Petersen,et al. An Integrated Prognostic Classifier for Stage I Lung Adenocarcinoma Based on mRNA, microRNA, and DNA Methylation Biomarkers , 2015, Journal of thoracic oncology : official publication of the International Association for the Study of Lung Cancer.
[23] F. Costa,et al. Epigenomes as therapeutic targets. , 2015, Pharmacology & therapeutics.
[24] Manolis Kellis,et al. Large-scale epigenome imputation improves data quality and disease variant enrichment , 2015, Nature Biotechnology.
[25] Andrew E. Teschendorff,et al. A systems-level integrative framework for genome-wide DNA methylation and gene expression data identifies differential gene expression modules under epigenetic control , 2014, Bioinform..
[26] E. Li,et al. Identification of a novel lysyl oxidase-like 2 alternative splicing isoform, LOXL2 Δe13, in esophageal squamous cell carcinoma. , 2014, Biochemistry and cell biology = Biochimie et biologie cellulaire.
[27] Kevin Y. Yip,et al. Whole-genome bisulfite sequencing of multiple individuals reveals complementary roles of promoter and gene body methylation in transcriptional regulation , 2014, Genome Biology.
[28] F. Jardin. Next generation sequencing and the management of diffuse large B-cell lymphoma: from whole exome analysis to targeted therapy. , 2014, Discovery medicine.
[29] D. Boomsma,et al. Epigenetic Variation in Monozygotic Twins: A Genome-Wide Analysis of DNA Methylation in Buccal Cells , 2014, Genes.
[30] G. Batist,et al. Ehd3, a regulator of vesicular trafficking, is silenced in gliomas and functions as a tumor suppressor by controlling cell cycle arrest and apoptosis. , 2014, Carcinogenesis.
[31] Teng Jiang,et al. Application of next-generation sequencing technologies in Neurology. , 2013, Annals of translational medicine.
[32] G. Felsenfeld. A brief history of epigenetics. , 2014, Cold Spring Harbor perspectives in biology.
[33] J. Nielsen,et al. Analysis of the Human Tissue-specific Expression by Genome-wide Integration of Transcriptomics and Antibody-based Proteomics* , 2013, Molecular & Cellular Proteomics.
[34] R. Young,et al. Super-Enhancers in the Control of Cell Identity and Disease , 2013, Cell.
[35] G. Getz,et al. Inferring tumour purity and stromal and immune cell admixture from expression data , 2013, Nature Communications.
[36] Carlos Caldas,et al. Analysis of circulating tumor DNA to monitor metastatic breast cancer. , 2013, The New England journal of medicine.
[37] J. Luketich,et al. Oesophageal carcinoma , 2013, The Lancet.
[38] S. Lam,et al. Genome-scale analysis of DNA methylation in lung adenocarcinoma and integration with mRNA expression , 2012, Genome research.
[39] M. Esteller,et al. Whole-genome bisulfite DNA sequencing of a DNMT3B mutant patient , 2012, Epigenetics.
[40] Peter A. Jones. Functions of DNA methylation: islands, start sites, gene bodies and beyond , 2012, Nature Reviews Genetics.
[41] E. Greer,et al. Histone methylation: a dynamic mark in health, disease and inheritance , 2012, Nature Reviews Genetics.
[42] K. Gunderson,et al. High density DNA methylation array with single CpG site resolution. , 2011, Genomics.
[43] C. Wu,et al. Epigenetic activation of human kallikrein 13 enhances malignancy of lung adenocarcinoma by promoting N-cadherin expression and laminin degradation. , 2011, Biochemical and biophysical research communications.
[44] Y. Miki,et al. Down‐regulation of keratin 4 and keratin 13 expression in oral squamous cell carcinoma and epithelial dysplasia: a clue for histopathogenesis , 2011, Histopathology.
[45] D. Sheff,et al. EHD3 regulates early-endosome-to-Golgi transport and preserves Golgi morphology , 2009, Journal of Cell Science.
[46] W. Chow,et al. Incidence of adenocarcinoma of the esophagus among white Americans by sex, stage, and age. , 2008, Journal of the National Cancer Institute.
[47] K. Washington,et al. DNA hypermethylation regulates the expression of members of the Mu-class glutathione S-transferases and glutathione peroxidases in Barrett’s adenocarcinoma , 2008, Gut.
[48] M. Suckow,et al. Sulindac treatment alters collagen and matrilysin expression in adenomas of ApcMin/+ mice. , 2008, Carcinogenesis.
[49] Peter D Siersema,et al. Esophageal cancer. , 2008, Gastroenterology clinics of North America.
[50] Brad T. Sherman,et al. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources , 2008, Nature Protocols.
[51] George Tseng,et al. Glutathione peroxidase 3, deleted or methylated in prostate cancer, suppresses prostate cancer growth and metastasis. , 2007, Cancer research.
[52] L. Donato,et al. Suppression of mammary carcinoma cell growth by retinoic acid: the cell cycle control gene Btg2 is a direct target for retinoic acid receptor signaling. , 2007, Cancer research.
[53] J. Reitsma,et al. Prognostic factors in adenocarcinoma of the esophagus or gastroesophageal junction. , 2006, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.
[54] Towia A. Libermann,et al. GADD45 Deregulation in Cancer: Frequently Methylated Tumor Suppressors and Potential Therapeutic Targets , 2005, Clinical Cancer Research.
[55] L. Donato,et al. Suppression of mammary carcinoma growth by retinoic acid: proapoptotic genes are targets for retinoic acid receptor and cellular retinoic acid-binding protein II signaling. , 2005, Cancer research.
[56] C. Moskaluk,et al. Hypermethylation and loss of expression of glutathione peroxidase-3 in Barrett's tumorigenesis. , 2005, Neoplasia.
[57] E. Galperin,et al. EHD3: A Protein That Resides in Recycling Tubular and Vesicular Membrane Structures and Interacts with EHD1 , 2002, Traffic.
[58] A. Lindblom,et al. Colorectal carcinogenesis is associated with stromal expression of COL11A1 and COL5A2. , 2001, Carcinogenesis.
[59] W. Lau,et al. Detection of aberrant p16 methylation in the plasma and serum of liver cancer patients. , 1999, Cancer research.