A large-scale analysis of mRNA polyadenylation of human and mouse genes
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Bin Tian | B. Tian | Haibo Zhang | C. Lutz | Jun Hu | Haibo Zhang | Carol S. Lutz | Jun Hu
[1] Christina Gloeckner,et al. Modern Applied Statistics With S , 2003 .
[2] J. Alwine,et al. Definition of the upstream efficiency element of the simian virus 40 late polyadenylation signal by using in vitro analyses , 1992, Molecular and cellular biology.
[3] G. Edwalds-Gilbert,et al. Alternative poly(A) site selection in complex transcription units: means to an end? , 1997, Nucleic acids research.
[4] Jeffrey Wilusz,et al. Downstream sequence elements with different affinities for the hnRNP H/H' protein influence the processing efficiency of mammalian polyadenylation signals. , 2002, Nucleic acids research.
[5] T. Shenk,et al. A 64 kd nuclear protein binds to RNA segments that include the AAUAAA polyadenylation motif , 1988, Cell.
[6] D Gautheret,et al. Identification of alternate polyadenylation sites and analysis of their tissue distribution using EST data. , 2001, Genome research.
[7] Jack E. Tabaska,et al. Detection of polyadenylation signals in human DNA sequences. , 1999, Gene.
[8] S. Peltz,et al. Interrelationships of the pathways of mRNA decay and translation in eukaryotic cells. , 1996, Annual review of biochemistry.
[9] D. Gautheret,et al. Sequence determinants in human polyadenylation site selection , 2003, BMC Genomics.
[10] J. Wilusz,et al. Auxiliary downstream elements are required for efficient polyadenylation of mammalian pre-mRNAs. , 1998, Nucleic acids research.
[11] L. Minvielle-Sebastia,et al. A comparison of mammalian and yeast pre-mRNA 3'-end processing. , 1997, Current opinion in cell biology.
[12] J. Wilusz,et al. Cleavage site determinants in the mammalian polyadenylation signal. , 1995, Nucleic acids research.
[13] T. Maniatis,et al. An extensive network of coupling among gene expression machines , 2002, Nature.
[14] Jeffrey Wilusz,et al. Upstream Elements Present in the 3′-Untranslated Region of Collagen Genes Influence the Processing Efficiency of Overlapping Polyadenylation Signals* , 2002, The Journal of Biological Chemistry.
[15] Kathryn A. O’Donnell,et al. An mRNA Surveillance Mechanism That Eliminates Transcripts Lacking Termination Codons , 2002, Science.
[16] J. Steitz,et al. Overexpression of HuR, a nuclear–cytoplasmic shuttling protein, increases the in vivo stability of ARE‐containing mRNAs , 1998, The EMBO journal.
[17] M. Edmonds,et al. A history of poly A sequences: from formation to factors to function. , 2002, Progress in nucleic acid research and molecular biology.
[18] E. Wahle,et al. The mechanism of 3' cleavage and polyadenylation of eukaryotic pre-mRNA. , 1997, Progress in nucleic acid research and molecular biology.
[19] Y. Benjamini,et al. Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .
[20] M. Wollerton,et al. The upstream sequence element of the C2 complement poly(A) signal activates mRNA 3' end formation by two distinct mechanisms. , 1998, Genes & development.
[21] B. Graveley,et al. CPSF recognition of an HIV-1 mRNA 3'-processing enhancer: multiple sequence contacts involved in poly(A) site definition. , 1995, Genes & development.
[22] J. Manley,et al. Mechanism and regulation of mRNA polyadenylation. , 1997, Genes & development.
[23] J. Manley,et al. The Polyadenylation Factor CstF-64 Regulates Alternative Processing of IgM Heavy Chain Pre-mRNA during B Cell Differentiation , 1996, Cell.
[24] M. Wickens,et al. Point mutations in AAUAAA and the poly (A) addition site: effects on the accuracy and efficiency of cleavage and polyadenylation in vitro. , 1990, Nucleic acids research.
[25] G. Shaw,et al. A conserved AU sequence from the 3′ untranslated region of GM-CSF mRNA mediates selective mRNA degradation , 1986, Cell.
[26] Eric C. Rouchka,et al. UTR Reconstruction and Analysis Using Genomically Aligned EST Sequences , 2000, ISMB.
[27] A. Shyu,et al. RNA stabilization by the AU‐rich element binding protein, HuR, an ELAV protein , 1998, The EMBO journal.
[28] Victor V. Solovyev,et al. SpliceDB: database of canonical and non-canonical mammalian splice sites , 2001, Nucleic Acids Res..
[29] C. Y. Chen,et al. Unraveling a cytoplasmic role for hnRNP D in the in vivo mRNA destabilization directed by the AU-rich element. , 1999, Genes & development.
[30] R. Amann,et al. Predictive Identification of Exonic Splicing Enhancers in Human Genes , 2022 .
[31] A. Sachs,et al. Poly(A) Tail Length Control in Saccharomyces cerevisiae Occurs by Message-Specific Deadenylation , 1998, Molecular and Cellular Biology.
[32] D. Gautheret,et al. Patterns of variant polyadenylation signal usage in human genes. , 2000, Genome research.
[33] W. J. Kent,et al. BLAT--the BLAST-like alignment tool. , 2002, Genome research.
[34] Jing Zhao,et al. Formation of mRNA 3′ Ends in Eukaryotes: Mechanism, Regulation, and Interrelationships with Other Steps in mRNA Synthesis , 1999, Microbiology and Molecular Biology Reviews.
[35] D. Hovorun,et al. Downstream elements of mammalian pre-mRNA polyadenylation signals: primary, secondary and higher-order structures. , 2003, Nucleic acids research.
[36] Nick Proudfoot,et al. New perspectives on connecting messenger RNA 3' end formation to transcription. , 2004, Current opinion in cell biology.
[37] J. Wilusz,et al. ELAV proteins stabilize deadenylated intermediates in a novel in vitro mRNA deadenylation/degradation system. , 1999, Genes & development.
[38] C. Y. Chen,et al. AU-rich elements: characterization and importance in mRNA degradation. , 1995, Trends in biochemical sciences.
[39] M. Wickens,et al. Life and death in the cytoplasm: messages from the 3' end. , 1997, Current opinion in genetics & development.
[40] C. MacDonald,et al. Reexamining the polyadenylation signal: were we wrong about AAUAAA? , 2002, Molecular and Cellular Endocrinology.
[41] E Pauws,et al. Heterogeneity in polyadenylation cleavage sites in mammalian mRNA sequences: implications for SAGE analysis. , 2001, Nucleic acids research.
[42] I. Mattaj,et al. The influence of 5′ and 3′ end structures on pre-mRNA metabolism , 1995, Journal of Cell Science.
[43] J. Manley,et al. Strange bedfellows: polyadenylation factors at the promoter. , 2003, Genes & development.
[44] Hongyu Zhang,et al. Alignment of BLAST High-scoring Segment Pairs Based on the Longest Increasing Subsequence Algorithm , 2003, Bioinform..
[45] C R Cantor,et al. In silico detection of control signals: mRNA 3'-end-processing sequences in diverse species. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[46] K. Neugebauer,et al. On the importance of being co-transcriptional , 2002, Journal of Cell Science.