An intelligent despeckling method for swept source optical coherence tomography images of skin

Optical Coherence Optical coherence tomography is a powerful high-resolution imaging method with a broad biomedical application. Nonetheless, OCT images suffer from a multiplicative artefacts so-called speckle, a result of coherent imaging of system. Digital filters become ubiquitous means for speckle reduction. Addressing the fact that there still a room for despeckling in OCT, we proposed an intelligent speckle reduction framework based on OCT tissue morphological, textural and optical features that through a trained network selects the winner filter in which adaptively suppress the speckle noise while preserve structural information of OCT signal. These parameters are calculated for different steps of the procedure to be used in designed Artificial Neural Network decider that select the best denoising technique for each segment of the image. Results of training shows the dominant filter is BM3D from the last category.

[1]  H. Lemij,et al.  Depth-resolved model-based reconstruction of attenuation coefficients in optical coherence tomography. , 2013, Biomedical optics express.

[2]  Aydogan Ozcan,et al.  Speckle reduction in optical coherence tomography images using digital filtering. , 2007, Journal of the Optical Society of America. A, Optics, image science, and vision.

[3]  Yrjö Neuvo,et al.  A New Class of Detail-Preserving Filters for Image Processing , 1987, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[4]  Douglas B. Kell,et al.  Wavelet Denoising of Infrared Spectra , 1997 .

[5]  E. Nezry,et al.  Adaptive speckle filters and scene heterogeneity , 1990 .

[6]  A. Podoleanu,et al.  Investigation of basal cell carcinoma using dynamic focus optical coherence tomography. , 2013, Applied optics.

[7]  Ali Hojjatoleslami,et al.  OCT skin image enhancement through attenuation compensation. , 2012, Applied optics.

[8]  Adrian Bradu,et al.  A new algorithm for speckle reduction of optical coherence tomography images , 2014, Photonics West - Biomedical Optics.

[9]  Isin Erer,et al.  Speckle noise reduction in SAR imaging using lattice filters based subband decomposition , 2007, 2007 IEEE International Geoscience and Remote Sensing Symposium.

[10]  Silvia Conforto,et al.  An intelligent speckle reduction algorithm for optical coherence tomography images , 2016, 2016 4th International Conference on Photonics, Optics and Laser Technology (PHOTOPTICS).

[11]  Donald T. Miller,et al.  Optical coherence tomography speckle reduction by a partially spatially coherent source. , 2005, Journal of biomedical optics.

[12]  Yoshinori Funama,et al.  Reduction of artifacts in degraded CT image by adaptive Wiener filter , 2002 .

[13]  Joseph M. Schmitt,et al.  Optical coherence tomography (OCT): a review , 1999 .

[14]  S. A. Hojjatoleslami,et al.  Two applications of solid phantoms in performance assessment of optical coherence tomography systems. , 2013, Applied optics.

[15]  Lihong V. Wang,et al.  High-resolution photoacoustic tomography of resting-state functional connectivity in the mouse brain , 2013, Proceedings of the National Academy of Sciences.

[16]  L. Rudin,et al.  Nonlinear total variation based noise removal algorithms , 1992 .

[17]  S. A. Hojjatoleslami,et al.  Image quality improvement in optical coherence tomography using Lucy-Richardson deconvolution algorithm. , 2013, Applied optics.

[18]  M. Larsen,et al.  Enhanced optical coherence tomography imaging by multiple scan averaging , 2005, British Journal of Ophthalmology.

[19]  J. Schmitt,et al.  Speckle in optical coherence tomography. , 1999, Journal of biomedical optics.

[20]  Jean-Michel Morel,et al.  A non-local algorithm for image denoising , 2005, 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05).

[21]  Mohammad R. N. Avanaki,et al.  Denoising based on noise parameter estimation in speckled OCT images using neural network , 2008, Canterbury Workshop and School in Optical Coherence Tomography and Adaptive Optics.

[22]  Alessandro Foi,et al.  Image Denoising by Sparse 3-D Transform-Domain Collaborative Filtering , 2007, IEEE Transactions on Image Processing.

[23]  Tae Joong Eom,et al.  Speckle reduction using an artificial neural network algorithm. , 2013, Applied optics.

[24]  J. Fujimoto,et al.  Speckle reduction in optical coherence tomography images by use of a spatially adaptive wavelet filter. , 2004, Optics letters.

[25]  Mohammad R.N. Avanaki,et al.  Investigation of computer-based skin cancer detection using optical coherence tomography , 2009 .

[26]  P. Shankar Speckle Reduction in Ultrasound B-Scans Using Weighted Averaging in Spatial Compounding , 1986, IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control.

[27]  Larry S. Davis,et al.  A new class of edge-preserving smoothing filters , 1987, Pattern Recognit. Lett..

[28]  Mohammad R. N. Avanaki,et al.  Spatial Compounding Algorithm for Speckle Reduction of Dynamic Focus OCT Images , 2013, IEEE Photonics Technology Letters.

[29]  Lucas J. van Vliet,et al.  Edge preserving orientation adaptive filtering , 1999, Proceedings. 1999 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (Cat. No PR00149).