Crystal structure of YdcE protein from Bacillus subtilis

Arhonda Gogos, Haiyan Mu, Fabiana Bahna, Carlos A. Gomez, and Lawrence Shapiro Department of Biochemistry and Molecular Biophysics, Columbia University College of Physicians and Surgeons, New York, New York Department of Ophthalmology, Columbia University College of Physicians and Surgeons, New York, New York Naomi Berrie Diabetes Center, Columbia University College of Physicians and Surgeons, New York, New York

[1]  Thomas C. Terwilliger,et al.  Automated MAD and MIR structure solution , 1999, Acta crystallographica. Section D, Biological crystallography.

[2]  L. Wyns,et al.  The F plasmid CcdB protein induces efficient ATP-dependent DNA cleavage by gyrase. , 1993, Journal of molecular biology.

[3]  D. Lipman,et al.  A genomic perspective on protein families. , 1997, Science.

[4]  C. Lima,et al.  Ulp1-SUMO crystal structure and genetic analysis reveal conserved interactions and a regulatory element essential for cell growth in yeast. , 2000, Molecular cell.

[5]  G. Mittenhuber,et al.  Occurrence of mazEF-like antitoxin/toxin systems in bacteria. , 1999, Journal of molecular microbiology and biotechnology.

[6]  Collaborative Computational,et al.  The CCP4 suite: programs for protein crystallography. , 1994, Acta crystallographica. Section D, Biological crystallography.

[7]  J. Thornton,et al.  PROCHECK: a program to check the stereochemical quality of protein structures , 1993 .

[8]  H. Engelberg-Kulka,et al.  Programmed Cell Death in Escherichia coli: Some Antibiotics Can Trigger mazEFLethality , 2001, Journal of bacteriology.

[9]  M. Ruiz-Echevarría,et al.  Kid, a small protein of the parD stability system of plasmid R1, is an inhibitor of DNA replication acting at the initiation of DNA synthesis. , 1995, Journal of molecular biology.

[10]  V S Lamzin,et al.  wARP: improvement and extension of crystallographic phases by weighted averaging of multiple-refined dummy atomic models. , 1997, Acta crystallographica. Section D, Biological crystallography.

[11]  H. Engelberg-Kulka,et al.  An Escherichia coli chromosomal "addiction module" regulated by guanosine [corrected] 3',5'-bispyrophosphate: a model for programmed bacterial cell death. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[12]  R. Boelens,et al.  Structural and functional analysis of the kid toxin protein from E. coli plasmid R1. , 2002, Structure.

[13]  G. Murshudov,et al.  Refinement of macromolecular structures by the maximum-likelihood method. , 1997, Acta crystallographica. Section D, Biological crystallography.

[14]  E. Ohtsubo,et al.  chpA and chpB, Escherichia coli chromosomal homologs of the pem locus responsible for stable maintenance of plasmid R100 , 1993, Journal of bacteriology.

[15]  R. B. Jensen,et al.  Programmed cell death in bacteria: proteic plasmid stabilization systems , 1995, Molecular microbiology.

[16]  R. Liddington,et al.  Crystal structure of CcdB, a topoisomerase poison from E. coli. , 1999, Journal of molecular biology.

[17]  T. Miki,et al.  Modulation of DNA supercoiling activity of Escherichia coli DNA gyrase by F plasmid proteins. Antagonistic actions of LetA (CcdA) and LetD (CcdB) proteins. , 1992, The Journal of biological chemistry.

[18]  Michael Y. Galperin,et al.  The COG database: new developments in phylogenetic classification of proteins from complete genomes , 2001, Nucleic Acids Res..

[19]  R. Boelens,et al.  Structural and Functional Analysis of the Kid Toxin Protein from E . coli Plasmid , 2002 .

[20]  K. Sharp,et al.  Protein folding and association: Insights from the interfacial and thermodynamic properties of hydrocarbons , 1991, Proteins.

[21]  Thomas C. Terwilliger,et al.  Electronic Reprint Biological Crystallography Maximum-likelihood Density Modification , 2022 .

[22]  S V Evans,et al.  SETOR: hardware-lighted three-dimensional solid model representations of macromolecules. , 1993, Journal of molecular graphics.

[23]  H. Engelberg-Kulka,et al.  Postsegregational Killing Mediated by the P1 Phage “Addiction Module” phd-doc Requires the Escherichia coli Programmed Cell Death SystemmazEF , 2001, Journal of bacteriology.

[24]  K. Gerdes Toxin-Antitoxin Modules May Regulate Synthesis of Macromolecules during Nutritional Stress , 2000, Journal of bacteriology.

[25]  Z. Otwinowski,et al.  Processing of X-ray diffraction data collected in oscillation mode. , 1997, Methods in enzymology.