Coding Region Prediction Based on a Universal DNA Sequence Representation Method
暂无分享,去创建一个
[1] Thom Grace,et al. Computer visualization of long genomic sequences , 1993, Proceedings Visualization '93.
[2] EUGENE HAMORI,et al. Novel DNA sequence representations , 1985, Nature.
[3] H. J. Jeffrey. Chaos game representation of gene structure. , 1990, Nucleic acids research.
[4] Wei Wang,et al. Computing linear transforms of symbolic signals , 2002, IEEE Trans. Signal Process..
[5] R. Voss,et al. Evolution of long-range fractal correlations and 1/f noise in DNA base sequences. , 1992, Physical review letters.
[6] Dimitris Anastassiou,et al. Frequency-domain analysis of biomolecular sequences , 2000, Bioinform..
[7] P. P. Va,et al. Digital filters for gene prediction applications , 2002 .
[8] Changchuan Yin,et al. A Fourier Characteristic of Coding Sequences: Origins and a Non-Fourier Approximation , 2005, J. Comput. Biol..
[9] M. A. GATES,et al. Simpler DNA sequence representations , 1985, Nature.
[10] E. A. Cheever,et al. Using signal processing techniques for DNA sequence comparison , 1989, Proceedings of the Fifteenth Annual Northeast Bioengineering Conference.
[11] M. Gates. A simple way to look at DNA. , 1986, Journal of theoretical biology.
[12] Chuan Yi Tang,et al. EXONSCAN: EXON Prediction with Signal Detection and Coding Region AligNment in Homologous Sequences , 2005 .
[13] Skolnick,et al. Global fractal dimension of human DNA sequences treated as pseudorandom walks. , 1992, Physical review. A, Atomic, molecular, and optical physics.
[14] Amir Niknejad,et al. DNA sequence representation without degeneracy. , 2003, Nucleic acids research.
[15] E. Hamori,et al. H curves, a novel method of representation of nucleotide series especially suited for long DNA sequences. , 1983, The Journal of biological chemistry.
[16] R. Guigó,et al. Comparative gene prediction in human and mouse. , 2003, Genome research.
[17] Wentian Li,et al. Universal 1/f noise, crossovers of scaling exponents, and chromosome-specific patterns of guanine-cytosine content in DNA sequences of the human genome. , 2004, Physical review. E, Statistical, nonlinear, and soft matter physics.
[18] R Zhang,et al. Z curves, an intutive tool for visualizing and analyzing the DNA sequences. , 1994, Journal of biomolecular structure & dynamics.
[19] Peter Tiño,et al. Spatial representation of symbolic sequences through iterative function systems , 1999, IEEE Trans. Syst. Man Cybern. Part A.
[20] B. Berger,et al. Human and Mouse Gene Structure: Comparative Analysis and Application to Exon Prediction , 2000 .
[21] Yizhar Lavner,et al. Gene prediction by spectral rotation measure: a new method for identifying protein-coding regions. , 2003, Genome research.
[22] H. J. Jeffrey. Chaos game representation of gene structure. , 1990, Nucleic acids research.
[23] R. Guigó,et al. EGASP: collaboration through competition to find human genes , 2005, Nature Methods.
[24] L. Pachter,et al. SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model. , 2003, Genome research.
[25] Eugene Hamori. Visualization of biological information encoded in DNA , 1994 .
[26] P. Rouzé,et al. Current methods of gene prediction, their strengths and weaknesses. , 2002, Nucleic acids research.
[27] Shih-Chieh Su,et al. Structural analysis of genomic sequences with matched filtering , 2003, Proceedings of the 25th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (IEEE Cat. No.03CH37439).