Non-parametric Iterative Model Constraint Graph min-cut for Automatic Kidney Segmentation

We present a new non-parametric model constraint graph min-cut algorithm for automatic kidney segmentation in CT images. The segmentation is formulated as a maximum a-posteriori estimation of a model-driven Markov random field. A non-parametric hybrid shape and intensity model is treated as a latent variable in the energy functional. The latent model and labeling map that minimize the energy functional are then simultaneously computed with an expectation maximization approach. The main advantages of our method are that it does not assume a fixed parametric prior model, which is subjective to inter-patient variability and registration errors, and that it combines both the model and the image information into a unified graph min-cut based segmentation framework. We evaluated our method on 20 kidneys from 10 CT datasets with and without contrast agent for which ground-truth segmentations were generated by averaging three manual segmentations. Our method yields an average volumetric overlap error of 10.95%, and average symmetric surface distance of 0.79 mm. These results indicate that our method is accurate and robust for kidney segmentation.

[1]  Gregory G. Slabaugh,et al.  Graph cuts segmentation using an elliptical shape prior , 2005, IEEE International Conference on Image Processing 2005.

[2]  A. Barak,et al.  The MOSIX Cluster Operating System for High-Performance Computing on Linux Clusters, Multi-Clusters, GPU Clusters and Clouds , 2011 .

[3]  Jacob Sosna,et al.  Estimating relative renal function from relative parenchymal volume--a feasibility study. , 2008, Journal of endourology.

[4]  Joachim Hornegger,et al.  A Generic Probabilistic Active Shape Model for Organ Segmentation , 2009, MICCAI.

[5]  Grégoire Malandain,et al.  Efficient Selection of the Most Similar Image in a Database for Critical Structures Segmentation , 2007, MICCAI.

[6]  Leo Joskowicz,et al.  Vessels-Cut: A Graph Based Approach to Patient-Specific Carotid Arteries Modeling , 2009, 3DPH.

[7]  Gareth Funka-Lea,et al.  Graph Cuts and Efficient N-D Image Segmentation , 2006, International Journal of Computer Vision.

[8]  Christopher J. Taylor,et al.  Medical Image Computing and Computer-Assisted Intervention – MICCAI 2009 , 2009, Lecture Notes in Computer Science.

[9]  Aly A. Farag,et al.  Graph Cuts Framework for Kidney Segmentation with Prior Shape Constraints , 2007, MICCAI.

[10]  William M. Wells,et al.  Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation , 2004, IEEE Transactions on Medical Imaging.

[11]  Nadia Magnenat-Thalmann Modelling the Physiological Human, 3D Physiological Human Workshop, 3DPH 2009, Zermatt, Switzerland, November 29 - December 2, 2009. Proceedings , 2009, 3DPH.

[12]  Max A. Viergever,et al.  elastix: A Toolbox for Intensity-Based Medical Image Registration , 2010, IEEE Transactions on Medical Imaging.

[13]  Yogesh Rathi,et al.  Graph Cut Segmentation with Nonlinear Shape Priors , 2007, 2007 IEEE International Conference on Image Processing.

[14]  Nicholas Ayache,et al.  Medical Image Computing and Computer-Assisted Intervention - MICCAI 2007, 10th International Conference, Brisbane, Australia, October 29 - November 2, 2007, Proceedings, Part I , 2007, MICCAI.

[15]  K. Bae,et al.  Semiautomated Segmentation of Kidney From High-Resolution Multidetector Computed Tomography Images Using a Graph-Cuts Technique , 2009, Journal of computer assisted tomography.

[16]  Andrew Zisserman,et al.  OBJ CUT , 2005, 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05).

[17]  Brian R Herts,et al.  Estimating glomerular filtration rate in kidney donors: a model constructed with renal volume measurements from donor CT scans. , 2009, Radiology.

[18]  Tao Zhang,et al.  Interactive graph cut based segmentation with shape priors , 2005, 2005 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (CVPR'05).

[19]  Yueh-Yun Chi,et al.  Comparison of human and automatic segmentations of kidneys from CT images. , 2005, International journal of radiation oncology, biology, physics.

[20]  Mert R. Sabuncu,et al.  Supervised Nonparametric Image Parcellation , 2009, MICCAI.