Joint modeling of HIV data in multicenter observational studies: A comparison among different approaches

Disease process over time results from the combination of event history information and longitudinal process. Commonly, separate analyses of longitudinal and survival outcomes are performed. However, discharging the dependence between these components may cause misleading results. Separate analyses are difficult to interpret whenever one deals with observational retrospective multicenter cohort studies where the biomarkers are poorly monitored over time, while the survival component may be affected by several sources of bias, such as multiple endpoints, multiple time-scales, and informative censoring. We discuss how joint modeling of longitudinal and survival data represents an effective strategy to incorporate all information simultaneously and to provide valid and efficient inferences, thus allowing to produce a better insight into the biological mechanisms underlying the phenomenon under study. Accounting for the whole dynamics of the disease process is crucial in retrospective longitudinal studies. In this work, we present different approaches for modeling longitudinal and time-to-event data, retrieved from 648 HIV-infected patients enrolled in the Italian cohort of the CASCADE (Concerted Action on SeroConversion to AIDS and Death in Europe) study, one of the largest AIDS collaborative cohort studies. In particular, we evaluate CD4 lymphocyte evolution over time (from the date of seroconversion) and overall survival, CD4 being one of the most important immunologic biomarker for HIV progression. Besides a standard separate modeling approach, we consider two alternative joint models: the traditional joint model and the joint latent class mixed model. Advantages and disadvantages of the different approaches are discussed. To compare the performances of these models, cross-validation procedures are also performed.

[1]  J. Ware,et al.  Random-effects models for longitudinal data. , 1982, Biometrics.

[2]  Nicholas P. Jewell,et al.  Marker processes in survival analysis , 1996, Lifetime data analysis.

[3]  M. Balter How Does HIV Overcome the Body's T Cell Bodyguards? , 1997, Science.

[4]  Roger Detels,et al.  Plasma Viral Load and CD4+ Lymphocytes as Prognostic Markers of HIV-1 Infection , 1997, Annals of Internal Medicine.

[5]  M. Wulfsohn,et al.  A joint model for survival and longitudinal data measured with error. , 1997, Biometrics.

[6]  E Graf,et al.  Assessment and comparison of prognostic classification schemes for survival data. , 1999, Statistics in medicine.

[7]  R Henderson,et al.  Joint modelling of longitudinal measurements and event time data. , 2000, Biostatistics.

[8]  Kholoud Porter,et al.  Survival after introduction of HAART in people with known duration of HIV-1 infection , 2000, The Lancet.

[9]  D. Bates,et al.  Mixed-Effects Models in S and S-PLUS , 2001 .

[10]  Yan Wang,et al.  Jointly Modeling Longitudinal and Event Time Data With Application to Acquired Immunodeficiency Syndrome , 2001 .

[11]  S. Zeger,et al.  Joint analysis of longitudinal data comprising repeated measures and times to events , 2001 .

[12]  J. Dupuy,et al.  Joint Modeling of Event Time and Nonignorable Missing Longitudinal Data , 2002, Lifetime data analysis.

[13]  C. McCulloch,et al.  Latent Class Models for Joint Analysis of Longitudinal Biomarker and Event Process Data , 2002 .

[14]  M. Daniels,et al.  A hierarchical modelling approach to analysing longitudinal data with drop‐out and non‐compliance, with application to an equivalence trial in paediatric acquired immune deficiency syndrome , 2002 .

[15]  Claudio J. Verzilli,et al.  A Monte Carlo EM algorithm for random-coefficient-based dropout models , 2002 .

[16]  Marie Davidian,et al.  A Semiparametric Likelihood Approach to Joint Modeling of Longitudinal and Time‐to‐Event Data , 2002, Biometrics.

[17]  J. Ibrahim,et al.  A Bayesian semiparametric joint hierarchical model for longitudinal and survival data. , 2003, Biometrics.

[18]  Robin Henderson,et al.  Diagnostics for Joint Longitudinal and Dropout Time Modeling , 2003, Biometrics.

[19]  C. Kendziorski,et al.  The efficiency of pooling mRNA in microarray experiments. , 2003, Biostatistics.

[20]  Donglin zeng,et al.  Simultaneous Modelling of Survival and Longitudinal Data with an Application to Repeated Quality of Life Measures , 2005, Lifetime data analysis.

[21]  F. Hsieh,et al.  Joint modelling of accelerated failure time and longitudinal data , 2005 .

[22]  Ian R White,et al.  Comparison of imputation and modelling methods in the analysis of a physical activity trial with missing outcomes. , 2004, International journal of epidemiology.

[23]  Hélène Jacqmin-Gadda,et al.  Joint modelling of bivariate longitudinal data with informative dropout and left‐censoring, with application to the evolution of CD4+ cell count and HIV RNA viral load in response to treatment of HIV infection , 2005, Statistics in medicine.

[24]  R. Elashoff,et al.  An approach to joint analysis of longitudinal measurements and competing risks failure time data , 2007, Statistics in medicine.

[25]  Ning Li,et al.  A Joint Model for Longitudinal Measurements and Survival Data in the Presence of Multiple Failure Types , 2008, Biometrics.

[26]  Michael J Daniels,et al.  A General Class of Pattern Mixture Models for Nonignorable Dropout with Many Possible Dropout Times , 2008, Biometrics.

[27]  Xihong Lin,et al.  Semiparametric Modeling of Longitudinal Measurements and Time‐to‐Event Data–A Two‐Stage Regression Calibration Approach , 2008, Biometrics.

[28]  J. Chmiel,et al.  Initiation of Antiretroviral Therapy at CD4 Cell Counts ≥350 Cells/mm3 Does Not Increase Incidence or Risk of Peripheral Neuropathy, Anemia, or Renal Insufficiency , 2008, Journal of acquired immune deficiency syndromes.

[29]  Cécile Proust-Lima,et al.  Joint modelling of multivariate longitudinal outcomes and a time-to-event: A nonlinear latent class approach , 2009, Comput. Stat. Data Anal..

[30]  Cécile Proust-Lima,et al.  Development and validation of a dynamic prognostic tool for prostate cancer recurrence using repeated measures of posttreatment PSA: a joint modeling approach. , 2009, Biostatistics.

[31]  Development and validation of a dynamic prognostic tool for prostate cancer recurrence using repeated measures of post-treatment PSA : a joint modelling approach , 2009 .

[32]  Cécile Proust-Lima,et al.  Score Test for Conditional Independence Between Longitudinal Outcome and Time to Event Given the Classes in the Joint Latent Class Model , 2010, Biometrics.

[33]  Dimitris Rizopoulos,et al.  JM: An R package for the joint modelling of longitudinal and time-to-event data , 2010 .

[34]  Xin Huang,et al.  A joint model of longitudinal and competing risks survival data with heterogeneous random effects and outlying longitudinal measurements. , 2010, Statistics and its interface.

[35]  R. Kaul,et al.  Effect of Baseline HIV Disease Parameters on CD4+ T Cell Recovery After Antiretroviral Therapy Initiation in Kenyan Women , 2010, PloS one.

[36]  Jiyuan Zhang,et al.  Interleukin‐17–producing CD4+ T cells increase with severity of liver damage in patients with chronic hepatitis B , 2010, Hepatology.

[37]  R. Redfield,et al.  Chronic immune activation and decreased CD4 cell counts associated with hepatitis C infection in HIV-1 natural viral suppressors , 2012, AIDS.

[38]  P. Peters,et al.  Preventing deaths in persons with HIV/hepatitis B virus coinfection: a call to accelerate prevention and treatment efforts. , 2012, The Journal of infectious diseases.

[39]  Wei Liu,et al.  Analysis of Longitudinal and Survival Data: Joint Modeling, Inference Methods, and Issues , 2012 .

[40]  Helen M. Chun,et al.  Hepatitis B virus coinfection negatively impacts HIV outcomes in HIV seroconverters. , 2012, The Journal of infectious diseases.

[41]  M. Rosińska,et al.  Time to Virological Failure, Treatment Change and Interruption for Individuals Treated within 12 Months of HIV Seroconversion and in Chronic Infection , 2012, Antiviral therapy.

[42]  A. Branch,et al.  Mortality in Hepatitis C Virus–Infected Patients With a Diagnosis of AIDS in the Era of Combination Antiretroviral Therapy , 2012, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[43]  Cécile Proust-Lima,et al.  Joint latent class models for longitudinal and time-to-event data: A review , 2014, Statistical methods in medical research.