Simple domain adaptation for cross-dataset analyses of brain MRI data

We consider the problem of domain shift in analyses of brain MRI data. While many different datasets are publicly available, most algorithms are still trained on a single dataset and often suffer the problem of limited and unbalanced sample sizes. In this work, we propose a surprisingly simple strategy to reduce the impact of domain shift - caused by different data sources and processing pipelines - that typically occurs in cross-dataset analyses. We experimentally evaluate our approach on the problem of using volumetric features to distinguish neurodegenerative diseases and report results using three datasets in two practically relevant scenarios: (1) cross-dataset learning and (2) leveraging pre-trained classifiers across different datasets. We show that our adaptation technique enables both scenarios with performance close to the single-dataset case.

[1]  Vladimir Fonov,et al.  Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: The CADDementia challenge , 2015, NeuroImage.

[2]  E. Bullmore,et al.  Imaging structural co-variance between human brain regions , 2013, Nature Reviews Neuroscience.

[3]  P. Mecocci,et al.  Random Forest ensembles for detection and prediction of Alzheimer's disease with a good between-cohort robustness , 2014, NeuroImage: Clinical.

[4]  Daniel Rueckert,et al.  Automatic morphometry in Alzheimer's disease and mild cognitive impairment☆☆☆ , 2011, NeuroImage.

[5]  Nick C Fox,et al.  The clinical use of structural MRI in Alzheimer disease , 2010, Nature Reviews Neurology.

[6]  Amity E. Green,et al.  Hippocampal Atrophy and Ventricular Enlargement in Normal Aging, Mild Cognitive Impairment (MCI), and Alzheimer Disease , 2012, Alzheimer disease and associated disorders.

[7]  Daniel Marcu,et al.  Domain Adaptation for Statistical Classifiers , 2006, J. Artif. Intell. Res..

[8]  Charles D. Smith,et al.  Structural brain alterations before mild cognitive impairment in ADNI: validation of volume loss in a predefined antero-temporal region. , 2012, Journal of Alzheimer's disease : JAD.

[9]  N. Schuff,et al.  Hippocampal atrophy patterns in mild cognitive impairment and Alzheimer's disease , 2010, Human brain mapping.

[10]  Sueli I. Rodrigues Costa,et al.  Fisher information distance: a geometrical reading? , 2012, Discret. Appl. Math..

[11]  Nuno Vasconcelos,et al.  Adapted Gaussian models for image classification , 2011, CVPR 2011.

[12]  Douglas A. Reynolds,et al.  Speaker Verification Using Adapted Gaussian Mixture Models , 2000, Digit. Signal Process..

[13]  Alexander Hammers,et al.  Three‐dimensional maximum probability atlas of the human brain, with particular reference to the temporal lobe , 2003, Human brain mapping.

[14]  S. Resnick,et al.  Longitudinal pattern of regional brain volume change differentiates normal aging from MCI , 2009, Neurology.

[15]  J. Atchison,et al.  Logistic-normal distributions:Some properties and uses , 1980 .

[16]  Florent Perronnin,et al.  Fisher Kernels on Visual Vocabularies for Image Categorization , 2007, 2007 IEEE Conference on Computer Vision and Pattern Recognition.

[17]  D. M. Titterington Logistic-Normal Distribution , 2014 .

[18]  Akshay Pai,et al.  Brain region’s relative proximity as marker for Alzheimer’s disease based on structural MRI , 2014, BMC Medical Imaging.

[19]  Mert R. Sabuncu,et al.  Multi-atlas segmentation of biomedical images: A survey , 2014, Medical Image Anal..