Using cryo-EM to measure the dipole potential of a lipid membrane

The dipole potential of a lipid bilayer membrane accounts for its much larger permeability to anions than cations and affects the conformation and function of membrane proteins. The absolute value of the dipole potential has been very difficult to measure, although its value has been estimated to range from 200 to 1,000 mV from ion translocation rates, the surface potential of lipid monolayers, and molecular dynamics calculations. Here, a point charge probe method was used to investigate the dipole potentials of both ester and ether lipid membranes. The interactions between electrons and lipid molecules were recorded by phase-contrast imaging using cryo-EM. The magnitude and the profile of the dipole potential along the bilayer normal were obtained by subtracting the contribution of the atomic potential from the cryo-EM image intensity. The peak dipole potential was estimated to be 510 and 260 mV for diphytanoylphosphatidylcholine and diphytanylphosphatidylcholine, respectively.

[1]  G Büldt,et al.  Neutron diffraction studies on phosphatidylcholine model membranes. I. Head group conformation. , 1979, Journal of molecular biology.

[2]  Ronald J Clarke,et al.  Hydrophobic ion hydration and the magnitude of the dipole potential. , 2002, Biophysical journal.

[3]  Thomas B Woolf,et al.  Atomistic simulations of biologically realistic transmembrane potential gradients. , 2004, The Journal of chemical physics.

[4]  R. Bracewell The Fourier Transform and Its Applications , 1966 .

[5]  E. Jakobsson,et al.  Combined Monte Carlo and molecular dynamics simulation of hydrated dipalmitoyl–phosphatidylcholine–cholesterol lipid bilayers , 2001 .

[6]  R. Bracewell The Fourier transform. , 1989, Scientific American.

[7]  R. Benz,et al.  Transport of oppositely charged lipophilic probe ions in lipid bilayer membranes having various structures , 1978, The Journal of Membrane Biology.

[8]  H. Brockman,et al.  Dipole potential of lipid membranes. , 1994, Chemistry and physics of lipids.

[9]  J. Dubochet,et al.  Cryo-electron microscopy of vitrified specimens , 1988, Quarterly Reviews of Biophysics.

[10]  Y. Antonenko,et al.  Effect of the dipole potential of a bilayer lipid membrane on gramicidin channel dissociation kinetics. , 1997, Biophysical journal.

[11]  D J DeRosier,et al.  Isolation, characterization and structure of bacterial flagellar motors containing the switch complex. , 1994, Journal of molecular biology.

[12]  V A Parsegian,et al.  Membrane dipole potentials, hydration forces, and the ordering of water at membrane surfaces. , 1992, Biophysical journal.

[13]  R. Clarke,et al.  Effect of lipid structure on the dipole potential of phosphatidylcholine bilayers. , 1997, Biochimica et biophysica acta.

[14]  N. Grigorieff,et al.  Accurate determination of local defocus and specimen tilt in electron microscopy. , 2003, Journal of structural biology.

[15]  B. Maggio,et al.  Modulation of phospholipase A2 by electrostatic fields and dipole potential of glycosphingolipids in monolayers. , 1999, Journal of lipid research.

[16]  E. Kamieńska-Piotrowicz,et al.  Effect of tetraphenylphosphonium and tetraphenylborate ions on the water structure in aqueous solutions; FTIR studies of HDO spectra , 1997 .

[17]  Marcos A. Villarreal,et al.  Molecular dynamics simulation study of the interaction of trehalose with lipid membranes. , 2004, Langmuir : the ACS journal of surfaces and colloids.

[18]  C. D. Cole,et al.  Noncontact dipole effects on channel permeation. IV. Kinetic model of 5F-Trp(13) gramicidin A currents. , 2001, Biophysical journal.

[19]  E Jakobsson,et al.  Molecular simulation of dioleoylphosphatidylcholine lipid bilayers at differing levels of hydration. , 2001, Biophysical journal.

[20]  J. Frank,et al.  Three-dimensional reconstruction with contrast transfer function correction from energy-filtered cryoelectron micrographs: procedure and application to the 70S Escherichia coli ribosome. , 1997, Journal of structural biology.

[21]  H. Stark,et al.  Automatic CTF correction for single particles based upon multivariate statistical analysis of individual power spectra. , 2003, Journal of structural biology.

[22]  Eugen Ermantraut,et al.  Electron holography of individual DNA molecules , 1997 .

[23]  K. Downing,et al.  Modeling chemical bonding effects for protein electron crystallography: the transferable fragmental electrostatic potential (TFESP) method. , 2002, Acta crystallographica. Section A, Foundations of crystallography.

[24]  D. DeRosier,et al.  Substructure of the flagellar basal body of Salmonella typhimurium. , 1992, Journal of molecular biology.

[25]  J. Nagle,et al.  Structure of lipid bilayers. , 2000, Biochimica et biophysica acta.

[26]  J. Coetzee,et al.  Solute-solvent interactions. VI. Specific interactions of tetraphenylarsonium, tetraphenylphosphonium, and tetraphenylborate ions with water and other solvents , 1971 .

[27]  C. Czaplewski,et al.  Molecular dynamics simulation studies of lipid bilayer systems. , 2000, Acta biochimica Polonica.

[28]  Y. Mély,et al.  Ultrasensitive two-color fluorescence probes for dipole potential in phospholipid membranes , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[29]  R. Brimacombe,et al.  Arrangement of tRNAs in Pre- and Posttranslocational Ribosomes Revealed by Electron Cryomicroscopy , 1997, Cell.

[30]  P. Pohl,et al.  Origin of membrane dipole potential: contribution of the phospholipid fatty acid chains. , 2002, Chemistry and physics of lipids.

[31]  J. Frank Three-Dimensional Electron Microscopy of Macromolecular Assemblies , 2006 .

[32]  E. Liberman,et al.  [Permeability of bimolecular phospholipid membranes for fat-soluble ions]. , 1969, Biofizika.

[33]  W Chiu,et al.  CTF determination of images of ice-embedded single particles using a graphics interface. , 1996, Journal of structural biology.

[34]  N. Unwin,et al.  Contrast transfer for frozen-hydrated specimens: determination from pairs of defocused images. , 1988, Ultramicroscopy.

[35]  Q. Ru,et al.  Electron holographic observation for biological specimens: electron holography of bio‐specimens , 1996, Journal of microscopy.

[36]  J. Nagle,et al.  Analysis of simulated NMR order parameters for lipid bilayer structure determination. , 1999, Biophysical journal.

[37]  Dunin-Borkowski The development of Fresnel contrast analysis, and the interpretation of mean inner potential profiles at interfaces , 2000, Ultramicroscopy.

[38]  Alexander M. Smondyrev,et al.  United atom force field for phospholipid membranes: Constant pressure molecular dynamics simulation of dipalmitoylphosphatidicholine/water system , 1999 .

[39]  L. Mayer,et al.  Vesicles of variable sizes produced by a rapid extrusion procedure. , 1986, Biochimica et biophysica acta.

[40]  B. Trus,et al.  Radial distributions of density within macromolecular complexes determined from dark-field electron micrographs. , 1984, Proceedings of the National Academy of Sciences of the United States of America.

[41]  E. Disalvo,et al.  Effect of phloretin on the dipole potential of phosphatidylcholine, phosphatidylethanolamine, and phosphatidylglycerol monolayers. , 2004, Langmuir : the ACS journal of surfaces and colloids.

[42]  Michael Lehmann,et al.  Tutorial on Off-Axis Electron Holography , 2002, Microscopy and Microanalysis.

[43]  J. Cladera,et al.  Intramembrane molecular dipoles affect the membrane insertion and folding of a model amphiphilic peptide. , 1998, Biophysical journal.

[44]  Masuhiro Mikami,et al.  Comparative molecular dynamics study of ether- and ester-linked phospholipid bilayers. , 2004, The Journal of chemical physics.

[45]  R. Macnab,et al.  Image reconstruction of the flagellar basal body of Salmonella typhimurium. , 1989, Journal of molecular biology.

[46]  P. O'shea Physical landscapes in biological membranes: physico–chemical terrains for spatio–temporal control of biomolecular interactions and behaviour , 2005, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.