Research resource: identification of novel coregulators specific for thyroid hormone receptor-β2.

Thyroid hormone receptors (TRs) are expressed as a series of interrelated isoforms that perform distinct biological roles. The TRβ2 isoform is found predominantly in the hypothalamus, pituitary, retina, and cochlea and displays unique transcriptional properties relative to the other TR isoforms. To more fully understand the isoform-specific biological and molecular properties of TRβ2, we have identified a series of previously unrecognized proteins that selectively interact with TRβ2 compared with the more widely expressed TRβ1. Several of these proteins preferentially enhance the transcriptional activity of TRβ2 when coexpressed in cells and are likely to represent novel, isoform-specific coactivators. Additional proteins were also identified in our screen that bind equally to TRβ1 and TRβ2 and may function as isoform-independent auxiliary proteins for these and/or other nuclear receptors. We propose that a combination of isoform-specific recruitment and tissue-specific expression of these newly identified coregulator candidates serves to customize TR function for different biological purposes in different cell types.

[1]  K. Igarashi,et al.  Increased cellular distribution of vimentin and Ret in the cingulum induced by developmental hypothyroidism in rat offspring maternally exposed to anti-thyroid agents. , 2012, Reproductive toxicology.

[2]  Florian Finkernagel,et al.  Genome-wide localization and expression profiling establish Sp2 as a sequence-specific transcription factor regulating vitally important genes , 2012, Nucleic acids research.

[3]  J. Schwabe,et al.  Nuclear hormone receptor co-repressors: Structure and function , 2012, Molecular and Cellular Endocrinology.

[4]  Sonia Sharma,et al.  Dephosphorylation of the nuclear factor of activated T cells (NFAT) transcription factor is regulated by an RNA-protein scaffold complex , 2011, Proceedings of the National Academy of Sciences.

[5]  D. Chan,et al.  Analysis of the Human Endogenous Coregulator Complexome , 2011, Cell.

[6]  W. Wan,et al.  A mechanism for pituitary-resistance to thyroid hormone (PRTH) syndrome: a loss in cooperative coactivator contacts by thyroid hormone receptor (TR)beta2. , 2011, Molecular endocrinology.

[7]  J. Aitchison,et al.  Role of the nuclear envelope in genome organization and gene expression , 2011, Wiley interdisciplinary reviews. Systems biology and medicine.

[8]  P. Sham,et al.  Two missense variants in UHRF1BP1 are independently associated with systemic lupus erythematosus in Hong Kong Chinese , 2011, Genes and Immunity.

[9]  H. Leonhardt,et al.  Usp7 and Uhrf1 control ubiquitination and stability of the maintenance DNA methyltransferase Dnmt1 , 2011, Journal of cellular biochemistry.

[10]  B. O’Malley,et al.  Nuclear receptor coactivators: structural and functional biochemistry. , 2011, Biochemistry.

[11]  R. Odze,et al.  IQGAP1 and IQGAP2 are Reciprocally Altered in Hepatocellular Carcinoma , 2010, BMC gastroenterology.

[12]  K. Oedegaard,et al.  A genome‐wide association study of bipolar disorder and comorbid migraine , 2010, Genes, brain, and behavior.

[13]  M. Muller,et al.  DNA Methyltransferase 1-associated Protein (DMAP1) Is a Co-repressor That Stimulates DNA Methylation Globally and Locally at Sites of Double Strand Break Repair* , 2010, The Journal of Biological Chemistry.

[14]  M. Lipinski,et al.  p21Waf1 expression is regulated by nuclear intermediate filament vimentin in neuroblastoma , 2010, BMC Cancer.

[15]  F. Chen,et al.  IQGAP1 is overexpressed in hepatocellular carcinoma and promotes cell proliferation by Akt activation , 2010, Experimental & Molecular Medicine.

[16]  Margaret A. Pericak-Vance,et al.  A genome-wide scan for common alleles affecting risk for autism , 2010, Human molecular genetics.

[17]  H. Kimura,et al.  Human POGZ modulates dissociation of HP1α from mitotic chromosome arms through Aurora B activation , 2010, Nature Cell Biology.

[18]  P. Davis,et al.  Molecular aspects of thyroid hormone actions. , 2010, Endocrine reviews.

[19]  A. Tsubota,et al.  IQGAP1 and vimentin are key regulator genes in naturally occurring hepatotumorigenesis induced by oxidative stress. , 2010, Carcinogenesis.

[20]  D. Stephan,et al.  A genome-wide association study for age-related hearing impairment in the Saami , 2010, European Journal of Human Genetics.

[21]  H. Leonhardt,et al.  The multi-domain protein Np95 connects DNA methylation and histone modification , 2009, Nucleic acids research.

[22]  Annette Lee,et al.  A large-scale replication study identifies TNIP1, PRDM1, JAZF1, UHRF1BP1 and IL10 as risk loci for systemic lupus erythematosus , 2009, Nature Genetics.

[23]  Florent Elefteriou,et al.  Vimentin Inhibits ATF4-mediated Osteocalcin Transcription and Osteoblast Differentiation* , 2009, The Journal of Biological Chemistry.

[24]  R. Sonn,et al.  IQGAP1 regulates cell proliferation through a novel CDC42-mTOR pathway , 2009, Journal of Cell Science.

[25]  M. Privalsky,et al.  The p160 Coactivator PAS-B Motif Stabilizes Nuclear Receptor Binding and Contributes to Isoform-specific Regulation by Thyroid Hormone Receptors* , 2009, The Journal of Biological Chemistry.

[26]  J. Rain,et al.  Lens Epithelium-derived Growth Factor/p75 Interacts with the Transposase-derived DDE Domain of PogZ* , 2009, Journal of Biological Chemistry.

[27]  S. Jacobsen,et al.  UHRF1 binds G9a and participates in p21 transcriptional regulation in mammalian cells , 2008, Nucleic acids research.

[28]  Yusuke Nakamura,et al.  Recognition of hemi-methylated DNA by the SRA protein UHRF1 by a base-flipping mechanism , 2008, Nature.

[29]  D. DeFranco,et al.  Coactivators and nuclear receptor transactivation , 2008, Journal of cellular biochemistry.

[30]  Hisashi Nojima,et al.  IQGAP3 regulates cell proliferation through the Ras/ERK signalling cascade , 2008, Nature Cell Biology.

[31]  K. Moelling,et al.  The PDZ Protein Erbin Modulates β-Catenin-Dependent Transcription , 2008, European Surgical Research.

[32]  C. Ufer,et al.  Translational regulation of glutathione peroxidase 4 expression through guanine-rich sequence-binding factor 1 is essential for embryonic brain development. , 2008, Genes & development.

[33]  M. Inagaki,et al.  Palmitoylation of ERBIN is required for its plasma membrane localization , 2008, Genes to cells : devoted to molecular & cellular mechanisms.

[34]  F. Guma,et al.  Propylthiouracil-induced congenital hypothyroidism upregulates vimentin phosphorylation and depletes antioxidant defenses in immature rat testis. , 2008, Journal of molecular endocrinology.

[35]  S. Hsu,et al.  A dual role for IQGAP1 in regulating exocytosis , 2008, Journal of Cell Science.

[36]  W. Bahou,et al.  Development of Hepatocellular Carcinoma in Iqgap2-Deficient Mice Is IQGAP1 Dependent , 2008, Molecular and Cellular Biology.

[37]  K. Mitsuya,et al.  The SRA protein Np95 mediates epigenetic inheritance by recruiting Dnmt1 to methylated DNA , 2007, Nature.

[38]  J. Qin,et al.  ICBP90, a Novel Methyl K9 H3 Binding Protein Linking Protein Ubiquitination with Heterochromatin Formation , 2007, Molecular and Cellular Biology.

[39]  N. Sonenberg,et al.  UHRF1 Plays a Role in Maintaining DNA Methylation in Mammalian Cells , 2007, Science.

[40]  I. Mabuchi,et al.  IQGAP2 is required for the cadherin-mediated cell-to-cell adhesion in Xenopus laevis embryos. , 2007, Developmental biology.

[41]  L. Mei,et al.  Erbin Inhibits Transforming Growth Factor β Signaling through a Novel Smad-Interacting Domain , 2007, Molecular and Cellular Biology.

[42]  P. Silver,et al.  Transcriptional regulation at the nuclear pore complex. , 2007, Current opinion in genetics & development.

[43]  I. Shin,et al.  Corepressor MMTR/DMAP1 Is Involved in both Histone Deacetylase 1- and TFIIH-Mediated Transcriptional Repression , 2007, Molecular and Cellular Biology.

[44]  H. Yost,et al.  A Wnt-CKIε-Rap1 Pathway Regulates Gastrulation by Modulating SIPA1L1, a Rap GTPase Activating Protein , 2007 .

[45]  Amitava Das,et al.  Disruption of an SP2/KLF6 Repression Complex by SHP Is Required for Farnesoid X Receptor-induced Endothelial Cell Migration* , 2006, Journal of Biological Chemistry.

[46]  M. Mann,et al.  In-gel digestion for mass spectrometric characterization of proteins and proteomes , 2006, Nature Protocols.

[47]  Samuel Refetoff,et al.  International Union of Pharmacology. LIX. The Pharmacology and Classification of the Nuclear Receptor Superfamily: Thyroid Hormone Receptors , 2006, Pharmacological Reviews.

[48]  Tudung T Nguyen,et al.  Identification of novel Runx1 (AML1) translocation partner genes SH3D19, YTHDf2, and ZNF687 in acute myeloid leukemia , 2006, Genes, chromosomes & cancer.

[49]  H. Samuels,et al.  The N-Terminal A/B domain of the thyroid hormone receptor-beta2 isoform influences ligand-dependent recruitment of coactivators to the ligand-binding domain. , 2006, Molecular endocrinology.

[50]  M. Privalsky,et al.  Thyroid hormone receptors mutated in liver cancer function as distorted antimorphs , 2006, Oncogene.

[51]  Steven O Simmons,et al.  Sp2 localizes to subnuclear foci associated with the nuclear matrix. , 2006, Molecular biology of the cell.

[52]  Malgorzata Schelder,et al.  Nuclear pore components are involved in the transcriptional regulation of dosage compensation in Drosophila. , 2006, Molecular cell.

[53]  L. Mei,et al.  Erbin Inhibits RAF Activation by Disrupting the Sur-8-Ras-Raf Complex* , 2006, Journal of Biological Chemistry.

[54]  K. Ullman,et al.  Versatility at the nuclear pore complex: lessons learned from the nucleoporin Nup153 , 2005, Chromosoma.

[55]  J. Rossant,et al.  Dissecting Wnt/β-catenin signaling during gastrulation using RNA interference in mouse embryos , 2005, Development.

[56]  B. Farboud,et al.  Pituitary resistance to thyroid hormone syndrome is associated with T3 receptor mutants that selectively impair beta2 isoform function. , 2005, Molecular endocrinology.

[57]  V. Markovtsov,et al.  Critical role of the ubiquitin ligase activity of UHRF1, a nuclear RING finger protein, in tumor cell growth. , 2005, Molecular biology of the cell.

[58]  Sheue-yann Cheng,et al.  Isoform-dependent actions of thyroid hormone nuclear receptors: Lessons from knockin mutant mice , 2005, Steroids.

[59]  M. Privalsky,et al.  Heterodimers of retinoic acid receptors and thyroid hormone receptors display unique combinatorial regulatory properties. , 2005, Molecular endocrinology.

[60]  M. Gross,et al.  Protein partners of C/EBPε , 2004 .

[61]  Yusuke Nakamura,et al.  ICBP90, an E2F-1 target, recruits HDAC1 and binds to methyl-CpG through its SRA domain , 2004, Oncogene.

[62]  N. Thompson,et al.  Identification of Sp2 as a transcriptional repressor of carcinoembryonic antigen-related cell adhesion molecule 1 in tumorigenesis. , 2004, Cancer research.

[63]  Song Tan,et al.  Structural and Functional Conservation of the NuA4 Histone Acetyltransferase Complex from Yeast to Humans , 2004, Molecular and Cellular Biology.

[64]  M. Privalsky,et al.  The role of corepressors in transcriptional regulation by nuclear hormone receptors. , 2004, Annual review of physiology.

[65]  J. Bassett,et al.  Mechanisms of thyroid hormone receptor-specific nuclear and extra nuclear actions , 2003, Molecular and Cellular Endocrinology.

[66]  Sheue-yann Cheng,et al.  Thyroid hormone receptor mutations in cancer , 2003, Molecular and Cellular Endocrinology.

[67]  T. Parmely,et al.  Identification of New Subunits of the Multiprotein Mammalian TRRAP/TIP60-containing Histone Acetyltransferase Complex* , 2003, Journal of Biological Chemistry.

[68]  A. Baranova,et al.  Molecular cloning, structural analysis, and expression of a human IRLB, MYC promoter-binding protein: new DENN domain-containing protein family emerges. , 2003, Genomics.

[69]  R. Aebersold,et al.  A statistical model for identifying proteins by tandem mass spectrometry. , 2003, Analytical chemistry.

[70]  F. Wondisford Thyroid Hormone Action: Insight from Transgenic Mouse Models , 2003, Journal of Investigative Medicine.

[71]  M. Lazar,et al.  Nuclear receptor corepressors , 2003, Nuclear receptor signaling.

[72]  D. Sacks,et al.  IQGAP proteins are integral components of cytoskeletal regulation , 2003, EMBO reports.

[73]  T. Noguchi,et al.  Localization of two IQGAPs in cultured cells and early embryos of Xenopus laevis. , 2003, Cell motility and the cytoskeleton.

[74]  Ueli Aebi,et al.  Intermediate filaments: molecular structure, assembly mechanism, and integration into functionally distinct intracellular Scaffolds. , 2003, Annual review of biochemistry.

[75]  D. Wazer,et al.  The High-Risk Human Papillomavirus Type 16 E6 Counters the GAP Function of E6TP1 toward Small Rap G Proteins , 2003, Journal of Virology.

[76]  L. Mei,et al.  Erbin Suppresses the MAP Kinase Pathway* , 2003, The Journal of Biological Chemistry.

[77]  M. Pickard,et al.  Influence of maternal hyperthyroidism in the rat on the expression of neuronal and astrocytic cytoskeletal proteins in fetal brain. , 2002, The Journal of endocrinology.

[78]  M. Katze,et al.  Selective Translation of Eukaryotic mRNAs: Functional Molecular Analysis of GRSF-1, a Positive Regulator of Influenza Virus Protein Synthesis , 2002, Journal of Virology.

[79]  Alexey I Nesvizhskii,et al.  Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. , 2002, Analytical chemistry.

[80]  D. Wazer,et al.  Human papillomavirus E6-induced degradation of E6TP1 is mediated by E6AP ubiquitin ligase. , 2002, Cancer research.

[81]  Michael W. Briggs,et al.  IQGAP1-mediated Stimulation of Transcriptional Co-activation by β-Catenin Is Modulated by Calmodulin* , 2002, The Journal of Biological Chemistry.

[82]  M. Fornerod,et al.  The nucleoporin Nup153 is required for nuclear pore basket formation, nuclear pore complex anchoring and import of a subset of nuclear proteins , 2001, The EMBO journal.

[83]  J. Saurat,et al.  The hemidesmosomal protein bullous pemphigoid antigen 1 and the integrin beta 4 subunit bind to ERBIN. Molecular cloning of multiple alternative splice variants of ERBIN and analysis of their tissue expression. , 2001, The Journal of biological chemistry.

[84]  M. Privalsky,et al.  Isoform-specific transcriptional regulation by thyroid hormone receptors: hormone-independent activation operates through a steroid receptor mode of co-activator interaction. , 2001, Molecular endocrinology.

[85]  P. Yen,et al.  Physiological and molecular basis of thyroid hormone action. , 2001, Physiological reviews.

[86]  O. Brison,et al.  A set of proteins interacting with transcription factor Sp1 identified in a two-hybrid screening , 2000, Molecular and Cellular Biochemistry.

[87]  S. Baylin,et al.  DNMT1 binds HDAC2 and a new co-repressor, DMAP1, to form a complex at replication foci , 2000, Nature Genetics.

[88]  D. Birnbaum,et al.  ERBIN: a basolateral PDZ protein that interacts with the mammalian ERBB2/HER2 receptor , 2000, Nature Cell Biology.

[89]  F. Wondisford,et al.  Thyroid Hormone-independent Interaction between the Thyroid Hormone Receptor β2 Amino Terminus and Coactivators* , 2000, The Journal of Biological Chemistry.

[90]  C. Glass,et al.  The coregulator exchange in transcriptional functions of nuclear receptors. , 2000, Genes & development.

[91]  M. Privalsky,et al.  Transcriptional Anti-repression , 1999, The Journal of Biological Chemistry.

[92]  Shen-Liang Chen,et al.  Expression of mutant thyroid hormone nuclear receptors in human hepatocellular carcinoma cells , 1999, Molecular carcinogenesis.

[93]  B. Lowell,et al.  Divergent roles for thyroid hormone receptor beta isoforms in the endocrine axis and auditory system. , 1999, The Journal of clinical investigation.

[94]  M. Katze,et al.  Regulation of eukaryotic protein synthesis: selective influenza viral mRNA translation is mediated by the cellular RNA-binding protein GRSF-1. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[95]  M. Powers,et al.  The nucleoporin nup153 plays a critical role in multiple types of nuclear export. , 1999, Molecular biology of the cell.

[96]  D. Wazer,et al.  The E6 Oncoproteins of High-Risk Papillomaviruses Bind to a Novel Putative GAP Protein, E6TP1, and Target It for Degradation , 1999, Molecular and Cellular Biology.

[97]  D. Forbes,et al.  Separate nuclear import pathways converge on the nucleoporin Nup153 and can be dissected with dominant-negative inhibitors , 1998, Current Biology.

[98]  M. Privalsky,et al.  A Conformational Switch in Nuclear Hormone Receptors Is Involved in Coupling Hormone Binding to Corepressor Release , 1998, Molecular and Cellular Biology.

[99]  Y. Murata,et al.  Multiple isoforms of thyroid hormone receptor: an analysis of their relative contribution in mediating thyroid hormone action. , 1998, Nagoya journal of medical science.

[100]  M. Privalsky,et al.  Transcriptional Silencing Is Defined by Isoform- and Heterodimer-Specific Interactions between Nuclear Hormone Receptors and Corepressors , 1998, Molecular and Cellular Biology.

[101]  P. Enarson,et al.  Amino-terminal sequences that direct nucleoporin Nup153 to the inner surface of the nuclear envelope , 1998, Chromosoma.

[102]  F. Wondisford,et al.  A unique role of the beta-2 thyroid hormone receptor isoform in negative regulation by thyroid hormone. Mapping of a novel amino-terminal domain important for ligand-independent activation. , 1997, The Journal of biological chemistry.

[103]  D. Forrest,et al.  Thyroid hormone receptor β is essential for development of auditory function , 1996, Nature Genetics.

[104]  B. Vennström,et al.  Ligand-dependent and -independent transactivation by thyroid hormone receptor beta 2 is determined by the structure of the hormone response element , 1995, Molecular and cellular biology.

[105]  F. Bieber,et al.  Isolation of novel and known genes from a human fetal cochlear cDNA library using subtractive hybridization and differential screening. , 1994, Genomics.

[106]  B. Chernov,et al.  Cloning of a cDNA encoding a human protein which binds a sequence in the c-myc gene similar to the interferon-stimulated response element. , 1994, Gene.

[107]  J. Wilusz,et al.  GRSF-1: a poly(A)+ mRNA binding protein which interacts with a conserved G-rich element. , 1994, Nucleic acids research.

[108]  G. Blobel,et al.  A nuclear pore complex protein that contains zinc finger motifs, binds DNA, and faces the nucleoplasm , 1993, Cell.

[109]  Manisha Sharma,et al.  IQGAP1 translocates to the nucleus in early S-phase and contributes to cell cycle progression after DNA replication arrest. , 2011, The international journal of biochemistry & cell biology.

[110]  B. Farboud,et al.  High throughput analysis of nuclear receptor-cofactor interactions. , 2009, Methods in molecular biology.

[111]  M. Privalsky,et al.  Novel mode of deoxyribonucleic acid recognition by thyroid hormone receptors: thyroid hormone receptor beta-isoforms can bind as trimers to natural response elements comprised of reiterated half-sites. , 2005, Molecular endocrinology.

[112]  Sheue-yann Cheng,et al.  Multiple Mechanisms for Regulation of the Transcriptional Activity of Thyroid Hormone Receptors , 2004, Reviews in Endocrine and Metabolic Disorders.

[113]  C. Glass,et al.  Nuclear receptor coactivators. , 2000, Advances in pharmacology.

[114]  M. Lazar,et al.  The mechanism of action of thyroid hormones. , 2000, Annual review of physiology.

[115]  R. Fletterick,et al.  Mechanisms of thyroid hormone action: insights from X-ray crystallographic and functional studies. , 1998, Recent progress in hormone research.

[116]  F. Wondisford,et al.  Isoform variable action among thyroid hormone receptor mutants provides insight into pituitary resistance to thyroid hormone. , 1997, Molecular endocrinology.

[117]  M. Carmo-Fonseca,et al.  Interactions of intermediate filaments with cell structures. , 1990, Electron microscopy reviews.