Multiple lines of evidence localise signalling, morphology and lipid biosynthesis machinery to the mitochondrial outer membrane of Arabidopsis thaliana

Owen Duncan, Nicolas L. Taylor, Chris Carrie, Holger Eubel, Szymon KubiszewskiJakubiak, Botao Zhang, Reena Narsai A. Harvey Millar and James Whelan* Australian Research Council Centre of Excellence in Plant Energy Biology, Centre for Comparative Analysis of Biomolecular Networks (CABiN), Centre for Computational Systems Biology, M316, The University of Western Australia, 35 Stirling Highway, Crawley WA 6009, Western Australia, Australia.

[1]  Gerhard Leubner-Metzger,et al.  First off the mark: early seed germination. , 2011, Journal of experimental botany.

[2]  A. Gilmore,et al.  Bcl-2 proteins and mitochondria--specificity in membrane targeting for death. , 2011, Biochimica et biophysica acta.

[3]  S. Fang,et al.  The AAA-ATPase p97 is essential for outer mitochondrial membrane protein turnover , 2011, Molecular biology of the cell.

[4]  T. Langer,et al.  Making heads or tails of phospholipids in mitochondria , 2011, The Journal of cell biology.

[5]  H. Batoko,et al.  A TSPO-related protein localizes to the early secretory pathway in Arabidopsis, but is targeted to mitochondria when expressed in yeast , 2010, Journal of experimental botany.

[6]  E. Moriyama,et al.  Evolution of the Kdo2-lipid A biosynthesis in bacteria , 2010, BMC Evolutionary Biology.

[7]  Chuanmao Zhang,et al.  G-protein β2 subunit interacts with mitofusin 1 to regulate mitochondrial fusion. , 2010, Nature communications.

[8]  D. Logan.  Mitochondrial fusion, division and positioning in plants. , 2010, Biochemical Society transactions.

[9]  T. Kuroiwa.  Mechanisms of organelle division and inheritance and their implications regarding the origin of eukaryotic cells , 2010, Proceedings of the Japan Academy. Series B, Physical and biological sciences.

[10]  F. Rolland,et al.  Sugar signalling and antioxidant network connections in plant cells , 2010, The FEBS journal.

[11]  P. Lerouge,et al.  Characterization of a putative 3-deoxy-D-manno-2-octulosonic acid (Kdo) transferase gene from Arabidopsis thaliana. , 2010, Glycobiology.

[12]  P. Walter,et al.  ERMES-mediated ER-mitochondria contacts: molecular hubs for the regulation of mitochondrial biology , 2010, Journal of Cell Science.

[13]  D. Rapaport,et al.  The enigmatic role of Mim1 in mitochondrial biogenesis. , 2010, European journal of cell biology.

[14]  James Whelan,et al.  Defining reference genes in Oryza sativa using organ, development, biotic and abiotic transcriptome datasets , 2010, BMC Plant Biology.

[15]  T. Reape,et al.  Apoptotic-like regulation of programmed cell death in plants , 2010, Apoptosis.

[16]  J. Whelan,et al.  Defining the mitochondrial stress response in Arabidopsis thaliana. , 2009, Molecular plant.

[17]  Johanna Bussemer,et al.  Calcium regulation in endosymbiotic organelles of plants , 2009, Plant signaling & behavior.

[18]  A. Millar,et al.  Exploring the Function-Location Nexus: Using Multiple Lines of Evidence in Defining the Subcellular Location of Plant Proteins , 2009, The Plant Cell Online.

[19]  Å. Fransson,et al.  The Miro GTPases: At the heart of the mitochondrial transport machinery , 2009, FEBS letters.

[20]  Sang Yeol Lee,et al.  Pathogen inducible voltage-dependent anion channel (AtVDAC) isoforms are localized to mitochondria membrane in Arabidopsis , 2009, Molecules and cells.

[21]  J. Whelan,et al.  Approaches to defining dual-targeted proteins in Arabidopsis. , 2009, The Plant journal : for cell and molecular biology.

[22]  D. Rapaport,et al.  Biogenesis of mitochondrial outer membrane proteins. , 2009, Biochimica et biophysica acta.

[23]  David Meinke,et al.  Identifying essential genes in Arabidopsis thaliana. , 2008, Trends in plant science.

[24]  W. Sakamoto,et al.  Arabidopsis ELONGATED MITOCHONDRIA1 Is Required for Localization of DYNAMIN-RELATED PROTEIN3A to Mitochondrial Fission Sites[W] , 2008, The Plant Cell Online.

[25]  Shohei Yamaoka,et al.  EMB2473/MIRO1, an Arabidopsis Miro GTPase, Is Required for Embryogenesis and Influences Mitochondrial Morphology in Pollen[W] , 2008, The Plant Cell Online.

[26]  C. Benning,et al.  Mutation of a mitochondrial outer membrane protein affects chloroplast lipid biosynthesis. , 2008, The Plant journal : for cell and molecular biology.

[27]  A. Millar,et al.  Resolving and identifying protein components of plant mitochondrial respiratory complexes using three dimensions of gel electrophoresis. , 2008, Journal of proteome research.

[28]  T. Dunkley,et al.  Determination of genuine residents of plant endomembrane organelles using isotope tagging and multivariate statistics. , 2008, Methods in molecular biology.

[29]  R. Lister,et al.  Functional Definition of Outer Membrane Proteins Involved in Preprotein Import into Mitochondria[W] , 2007, The Plant Cell Online.

[30]  Alisdair R Fernie,et al.  Glycolytic Enzymes Associate Dynamically with Mitochondria in Response to Respiratory Demand and Support Substrate Channeling[W] , 2007, The Plant Cell Online.

[31]  A. Millar,et al.  Free-flow electrophoresis for purification of plant mitochondria by surface charge. , 2007, The Plant journal : for cell and molecular biology.

[32]  A. Weber,et al.  Spinach SoHXK1 is a mitochondria-associated hexokinase , 2007, Planta.

[33]  M. Washburn,et al.  Quantitative shotgun proteomics using a protease with broad specificity and normalized spectral abundance factors. , 2007, Molecular bioSystems.

[34]  Joshua L. Heazlewood,et al.  SUBA: the Arabidopsis Subcellular Database , 2006, Nucleic Acids Res..

[35]  K. Mihara,et al.  Cytosolic factor‐ and TOM‐independent import of C‐tail‐anchored mitochondrial outer membrane proteins , 2006, The EMBO journal.

[36]  J. Browse,et al.  A mutation in Arabidopsis cytochrome b5 reductase identified by high-throughput screening differentially affects hydroxylation and desaturation. , 2006, The Plant journal : for cell and molecular biology.

[37]  I. Nishida,et al.  Defects in CTP:PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE Affect Embryonic and Postembryonic Development in Arabidopsis[W] , 2006, The Plant Cell Online.

[38]  P. Armstrong,et al.  Histochemical Evidence for Lipid a (endotoxin) in Eukaryote Chloroplasts Materials and Methods , 2022 .

[39]  W. Kim,et al.  Mitochondria-Associated Hexokinases Play a Role in the Control of Programmed Cell Death in Nicotiana benthamiana[W] , 2006, The Plant Cell Online.

[40]  R. Bannen,et al.  Membrane Association, Mechanism of Action, and Structure of Arabidopsis Embryonic Factor 1 (FAC1)* , 2006, Journal of Biological Chemistry.

[41]  Trong Khoa Pham,et al.  Isobaric tags for relative and absolute quantitation (iTRAQ) reproducibility: Implication of multiple injections. , 2006, Journal of proteome research.

[42]  D. Logan,et al.  BIGYIN, an orthologue of human and yeast FIS1 genes functions in the control of mitochondrial size and number in Arabidopsis thaliana. , 2006, Journal of experimental botany.

[43]  Albert Sickmann,et al.  Proteomic analysis of the yeast mitochondrial outer membrane reveals accumulation of a subclass of preproteins. , 2005, Molecular biology of the cell.

[44]  P. Oefner,et al.  Proteome analysis of mitochondrial outer membrane from Neurospora crassa , 2006, Proteomics.

[45]  D. McCurdy,et al.  Mitochondria as a connected population: ensuring continuity of the mitochondrial genome during plant cell dedifferentiation through massive mitochondrial fusion. , 2005, The Plant journal : for cell and molecular biology.

[46]  M. Mann,et al.  Exponentially Modified Protein Abundance Index (emPAI) for Estimation of Absolute Protein Amount in Proteomics by the Number of Sequenced Peptides per Protein*S , 2005, Molecular & Cellular Proteomics.

[47]  C. Xie,et al.  EMBRYONIC FACTOR 1 encodes an AMP deaminase and is essential for the zygote to embryo transition in Arabidopsis. , 2005, The Plant journal : for cell and molecular biology.

[48]  A. Millar,et al.  The C-terminal Region of TIM17 Links the Outer and Inner Mitochondrial Membranes in Arabidopsis and Is Essential for Protein Import* , 2005, Journal of Biological Chemistry.

[49]  Stefan R. Henz,et al.  A gene expression map of Arabidopsis thaliana development , 2005, Nature Genetics.

[50]  R. Lister,et al.  Protein import into mitochondria: origins and functions today (Review) , 2005, Molecular membrane biology.

[51]  A. Millar,et al.  Ordered Assembly of Mitochondria During Rice Germination Begins with Promitochondrial Structures Rich in Components of the Protein Import Apparatus , 2005, Plant Molecular Biology.

[52]  H. Braun,et al.  Respiratory chain supercomplexes in plant mitochondria. , 2004, Plant physiology and biochemistry : PPB.

[53]  Rebecca L. Frederick,et al.  Yeast Miro GTPase, Gem1p, regulates mitochondrial morphology via a novel pathway , 2004, The Journal of cell biology.

[54]  R. Moreno-Sánchez,et al.  Mitochondrial Bound Hexokinase Activity as a Preventive Antioxidant Defense , 2004, Journal of Biological Chemistry.

[55]  Rodrigo A Gutiérrez,et al.  The Plant-Specific Database. Classification of Arabidopsis Proteins Based on Their Phylogenetic Profile1 , 2004, Plant Physiology.

[56]  D. McCurdy,et al.  Organelle inheritance in plant cell division: the actin cytoskeleton is required for unbiased inheritance of chloroplasts, mitochondria and endoplasmic reticulum in dividing protoplasts. , 2004, The Plant journal : for cell and molecular biology.

[57]  Ryan Lister,et al.  A plant outer mitochondrial membrane protein with high amino acid sequence identity to a chloroplast protein import receptor , 2004, FEBS letters.

[58]  I. Dry,et al.  The mitochondrial localization of hexokinase in pea leaves , 1983, Planta.

[59]  C. Koehler.  The small Tim proteins and the twin Cx3C motif. , 2004, Trends in biochemical sciences.

[60]  N. Pfanner,et al.  An Essential Role of Sam50 in the Protein Sorting and Assembly Machinery of the Mitochondrial Outer Membrane* , 2003, Journal of Biological Chemistry.

[61]  B. Boisson,et al.  Unexpected Protein Families Including Cell Defense Components Feature in the N-Myristoylome of a Higher Eukaryote* , 2003, Journal of Biological Chemistry.

[62]  A. Millar,et al.  Mitochondrial complex I from Arabidopsis and rice: orthologs of mammalian and fungal components coupled with plant-specific subunits. , 2003, Biochimica et biophysica acta.

[63]  Lothar Jänsch,et al.  Identification of novel subunits of the TOM complex from Arabidopsis thaliana , 2003 .

[64]  A. Ruusala,et al.  Atypical Rho GTPases Have Roles in Mitochondrial Homeostasis and Apoptosis* , 2003, The Journal of Biological Chemistry.

[65]  C. Whitfield,et al.  Lipopolysaccharide endotoxins. , 2002, Annual review of biochemistry.

[66]  A. Millar,et al.  Nucleoside diphosphate kinase III is localized to the inter‐membrane space in plant mitochondria , 2001, FEBS letters.

[67]  V. Germain,et al.  Requirement for 3-ketoacyl-CoA thiolase-2 in peroxisome development, fatty acid beta-oxidation and breakdown of triacylglycerol in lipid bodies of Arabidopsis seedlings. , 2001, The Plant journal : for cell and molecular biology.

[68]  H. Braun,et al.  Purification and characterization of the preprotein translocase of the outer mitochondrial membrane from Arabidopsis. Identification of multiple forms of TOM20. , 2001, Plant physiology.

[69]  A. Millar,et al.  Mitochondrial biogenesis during germination in maize embryos. , 2001, Plant physiology.

[70]  T. Lithgow,et al.  How do plant mitochondria avoid importing chloroplast proteins? Components of the import apparatus Tom20 and Tom22 from Arabidopsis differ from their fungal counterparts. , 2000, Plant physiology.

[71]  D. Ohta,et al.  Microsomal electron transfer in higher plants: cloning and heterologous expression of NADH-cytochrome b5 reductase from Arabidopsis. , 1999, Plant physiology.

[72]  H. Braun,et al.  Unique Composition of the Preprotein Translocase of the Outer Mitochondrial Membrane from Plants* , 1998, The Journal of Biological Chemistry.

[73]  D. Rickwood,et al.  Cell and Molecular Biology , 1998, The Journal of Steroid Biochemistry and Molecular Biology.

[74]  V. Haucke,et al.  Analysis of the sorting signals directing NADH-cytochrome b5 reductase to two locations within yeast mitochondria , 1997, Molecular and cellular biology.

[75]  U. Schmitz,et al.  A receptor for protein import into potato mitochondria. , 1996, The Plant journal : for cell and molecular biology.

[76]  Wen-Ning Zhao,et al.  Assembly and Function of a Cytosolic Form of NADH-specific Isocitrate Dehydrogenase in Yeast (*) , 1996, The Journal of Biological Chemistry.

[77]  N. Camougrand,et al.  NCA2, a second nuclear gene required for the control of mitochondrial synthesis of subunits 6 and 8 of ATP synthase in Saccharomyces cerevisiae. , 1995, Journal of molecular biology.

[78]  D. Clewell,et al.  Characterization of the determinant (traB) encoding sex pheromone shutdown by the hemolysin/bacteriocin plasmid pAD1 in Enterococcus faecalis. , 1994, Plasmid.

[79]  D. Morré,et al.  Distribution of phospholipid biosynthetic enzymes among cell components of rat liver. , 1978, The Journal of biological chemistry.

[80]  P. Strittmatter.  The reaction sequence in electron transfer in the reduced nicotinamide adenine dinucleotide-cytochrome b5 reductase system. , 1965, The Journal of biological chemistry.