A Bipartite Signaling Mechanism Involved in DnaJ-mediated Activation of the Escherichia coli DnaK Protein (*)

The DnaK and DnaJ heat shock proteins function as the primary Hsp70 and Hsp40 homologues, respectively, of Escherichia coli. Intensive studies of various Hsp70 and DnaJ-like proteins over the past decade have led to the suggestion that interactions between specific pairs of these two types of proteins permit them to serve as molecular chaperones in a diverse array of protein metabolic events, including protein folding, protein trafficking, and assembly and disassembly of multisubunit protein complexes. To further our understanding of the nature of Hsp70-DnaJ interactions, we have sought to define the minimal sequence elements of DnaJ required for stimulation of the intrinsic ATPase activity of DnaK. As judged by proteolysis sensitivity, DnaJ is composed of three separate regions, a 9-kDa NH-terminal domain, a 30-kDa COOH-terminal domain, and a protease-sensitive glycine- and phenylalanine-rich (G/F-rich) segment of 30 amino acids that serves as a flexible linker between the two domains. The stable 9-kDa proteolytic fragment was identified as the highly conserved J-region found in all DnaJ homologues. Using this structural information as a guide, we constructed, expressed, purified, and characterized several mutant DnaJ proteins that contained either NH-terminal or COOH-terminal deletions. At variance with current models of DnaJ action, DnaJ1-75, a polypeptide containing an intact J-region, was found to be incapable of stimulating ATP hydrolysis by DnaK protein. We found, instead, that two sequence elements of DnaJ, the J-region and the G/F-rich linker segment, are each required for activation of DnaK-mediated ATP hydrolysis and for minimal DnaJ function in the initiation of bacteriophage DNA replication. Further analysis indicated that maximal activation of ATP hydrolysis by DnaK requires two independent but simultaneous protein-protein interactions: (i) interaction of DnaK with the J-region of DnaJ and (ii) binding of a peptide or polypeptide to the polypeptide-binding site associated with the COOH-terminal domain of DnaK. This dual signaling process required for activation of DnaK function has mechanistic implications for those protein metabolic events, such as polypeptide translocation into the endoplasmic reticulum in eukaryotic cells, that are dependent on interactions between Hsp70-like and DnaJ-like proteins.

[1]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[2]  R. Schekman,et al.  BiP and Sec63p are required for both co- and posttranslational protein translocation into the yeast endoplasmic reticulum. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[3]  M. Żylicz,et al.  Divergent Effects of ATP on the Binding of the DnaK and DnaJ Chaperones to Each Other, or to Their Various Native and Denatured Protein Substrates (*) , 1995, The Journal of Biological Chemistry.

[4]  C. Georgopoulos,et al.  ATP Hydrolysis Is Required for the DnaJ-dependent Activation of DnaK Chaperone for Binding to Both Native and Denatured Protein Substrates (*) , 1995, The Journal of Biological Chemistry.

[5]  C. Georgopoulos,et al.  The DnaJ chaperone catalytically activates the DnaK chaperone to preferentially bind the sigma 32 heat shock transcriptional regulator. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[6]  P. Silver,et al.  A yeast DnaJ homologue, Scj1p, can function in the endoplasmic reticulum with BiP/Kar2p via a conserved domain that specifies interactions with Hsp70s , 1995, The Journal of cell biology.

[7]  J. Prestegard,et al.  1H and 15N magnetic resonance assignments, secondary structure, and tertiary fold of Escherichia coli DnaJ(1-78). , 1995, Biochemistry.

[8]  R. Jordan,et al.  Modulation of the ATPase Activity of the Molecular Chaperone DnaK by Peptides and the DnaJ and GrpE Heat Shock Proteins (*) , 1995, The Journal of Biological Chemistry.

[9]  E. Eisenberg,et al.  Effect of Nucleotide on the Binding of Peptides to 70-kDa Heat Shock Protein (*) , 1995, The Journal of Biological Chemistry.

[10]  C. Georgopoulos,et al.  The Conserved G/F Motif of the DnaJ Chaperone Is Necessary for the Activation of the Substrate Binding Properties of the DnaK Chaperone (*) , 1995, The Journal of Biological Chemistry.

[11]  J. Sambrook,et al.  Common and divergent peptide binding specificities of hsp70 molecular chaperones. , 1994, The Journal of biological chemistry.

[12]  K. Wüthrich,et al.  NMR structure determination of the Escherichia coli DnaJ molecular chaperone: secondary structure and backbone fold of the N-terminal region (residues 2-108) containing the highly conserved J domain. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[13]  H. Taguchi,et al.  Isolation of the stable hexameric DnaK.DnaJ complex from Thermus thermophilus. , 1994, The Journal of biological chemistry.

[14]  F. Hartl,et al.  The ATP hydrolysis-dependent reaction cycle of the Escherichia coli Hsp70 system DnaK, DnaJ, and GrpE. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[15]  Elizabeth A. Craig,et al.  Heat shock proteins and molecular chaperones: Mediators of protein conformation and turnover in the cell , 1994, Cell.

[16]  M. Gottesman,et al.  Different peptide binding specificities of hsp70 family members. , 1994, Journal of molecular biology.

[17]  D. Cyr,et al.  Differential regulation of Hsp70 subfamilies by the eukaryotic DnaJ homologue YDJ1. , 1994, The Journal of biological chemistry.

[18]  T. Langer,et al.  DnaJ-like proteins: molecular chaperones and specific regulators of Hsp70. , 1994, Trends in biochemical sciences.

[19]  C. Georgopoulos,et al.  The NH2-terminal 108 amino acids of the Escherichia coli DnaJ protein stimulate the ATPase activity of DnaK and are sufficient for lambda replication. , 1994, The Journal of biological chemistry.

[20]  W. Burkholder,et al.  Specificity of DnaK-peptide binding. , 1994, Journal of molecular biology.

[21]  R. Schekman,et al.  A Sec63p-BiP complex from yeast is required for protein translocation in a reconstituted proteoliposome , 1993, The Journal of cell biology.

[22]  S. Sprang,et al.  Affinity panning of a library of peptides displayed on bacteriophages reveals the binding specificity of BiP , 1993, Cell.

[23]  H. Okamura,et al.  Genetic interactions between KAR2 and SEC63, encoding eukaryotic homologues of DnaK and DnaJ in the endoplasmic reticulum. , 1993, Molecular biology of the cell.

[24]  F. Hartl,et al.  DnaK, DnaJ and GrpE form a cellular chaperone machinery capable of repairing heat‐induced protein damage. , 1993, The EMBO journal.

[25]  F. Hartl,et al.  Control of folding and membrane translocation by binding of the chaperone DnaJ to nascent polypeptides. , 1993, Proceedings of the National Academy of Sciences of the United States of America.

[26]  P. Silver,et al.  Eukaryotic DnaJ homologs and the specificity of Hsp70 activity , 1993, Cell.

[27]  E. Craig,et al.  Heat shock proteins: molecular chaperones of protein biogenesis , 1993, Microbiological reviews.

[28]  C. Georgopoulos,et al.  Initiation of lambda DNA replication. The Escherichia coli small heat shock proteins, DnaJ and GrpE, increase DnaK's affinity for the lambda P protein. , 1993, The Journal of biological chemistry.

[29]  J. Hoskins,et al.  DnaJ, DnaK, and GrpE heat shock proteins are required in oriP1 DNA replication solely at the RepA monomerization step. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[30]  J. Adler,et al.  DnaK, DnaJ, and GrpE are required for flagellum synthesis in Escherichia coli , 1992, Journal of bacteriology.

[31]  R. Schekman,et al.  Topology and Functional Domains of Sec 63 p , an Endoplasmic Reticulum Membrane Protein Required for Secretory Protein Translocation , 1992 .

[32]  F. Hartl,et al.  Protein folding in the cell: the role of molecular chaperones Hsp70 and Hsp60. , 1992, Annual review of biophysics and biomolecular structure.

[33]  H. Bujard,et al.  Physical interaction between heat shock proteins DnaK, DnaJ, and GrpE and the bacterial heat shock transcription factor σ 32 , 1992, Cell.

[34]  L. Gierasch,et al.  Different conformations for the same polypeptide bound to chaperones DnaK and GroEL , 1992, Nature.

[35]  J. Rothman,et al.  Peptide-binding specificity of the molecular chaperone BiP , 1991, Nature.

[36]  J. Hoskins,et al.  Monomerization of RepA dimers by heat shock proteins activates binding to DNA replication origin. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[37]  C. Georgopoulos,et al.  Escherichia coli DnaJ and GrpE heat shock proteins jointly stimulate ATPase activity of DnaK. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[38]  R. Burdon Stress proteins in biology and medicine , 1991 .

[39]  C. Gross,et al.  DnaK, DnaJ, and GrpE heat shock proteins negatively regulate heat shock gene expression by controlling the synthesis and stability of sigma 32. , 1990, Genes & development.

[40]  Elizabeth A. Craig,et al.  Requirement for hsp70 in the mitochondrial matrix for translocation and folding of precursor proteins , 1990, Nature.

[41]  F. Hartl,et al.  How do polypeptides cross the mitochondrial membranes? , 1990, Cell.

[42]  E. Craig,et al.  Identification and characterization of a new Escherichia coli gene that is a dosage-dependent suppressor of a dnaK deletion mutation , 1990, Journal of bacteriology.

[43]  P. Silver,et al.  A yeast gene important for protein assembly into the endoplasmic reticulum and the nucleus has homology to DnaJ, an Escherichia coli heat shock protein , 1989, The Journal of cell biology.

[44]  J. Rothman Polypeptide chain binding proteins: Catalysts of protein folding and related processes in cells , 1989, Cell.

[45]  P. V. von Hippel,et al.  Calculation of protein extinction coefficients from amino acid sequence data. , 1989, Analytical biochemistry.

[46]  J. Rothman,et al.  Peptide binding and release by proteins implicated as catalysts of protein assembly. , 1989, Science.

[47]  C. Alfano,et al.  Ordered assembly of nucleoprotein structures at the bacteriophage lambda replication origin during the initiation of DNA replication. , 1989, The Journal of biological chemistry.

[48]  C. Alfano,et al.  Heat shock protein-mediated disassembly of nucleoprotein structures is required for the initiation of bacteriophage lambda DNA replication. , 1989, The Journal of biological chemistry.

[49]  H. Echols,et al.  Specialized nucleoprotein structures at the origin of replication of bacteriophage lambda. Protein association and disassociation reactions responsible for localized initiation of replication. , 1989, The Journal of biological chemistry.

[50]  C. Georgopoulos,et al.  Initiation of lambda DNA replication with purified host‐ and bacteriophage‐encoded proteins: the role of the dnaK, dnaJ and grpE heat shock proteins. , 1989, The EMBO journal.

[51]  C. Alfano,et al.  Reconstitution of a nine-protein system that initiates bacteriophage λ DNA replication , 1989 .

[52]  C. Gross,et al.  Escherichia coli heat shock gene mutants are defective in proteolysis. , 1988, Genes & development.

[53]  G. Blobel,et al.  70K heat shock related proteins stimulate protein translocation into microsomes , 1988, Nature.

[54]  Elizabeth A. Craig,et al.  A subfamily of stress proteins facilitates translocation of secretory and mitochondrial precursor polypeptides , 1988, Nature.

[55]  F. Neidhardt,et al.  Escherichia Coli and Salmonella: Typhimurium Cellular and Molecular Biology , 1987 .

[56]  E. Craig,et al.  Major heat shock gene of Drosophila and the Escherichia coli heat-inducible dnaK gene are homologous. , 1984, Proceedings of the National Academy of Sciences of the United States of America.

[57]  C. Georgopoulos,et al.  The dnaK protein of Escherichia coli possesses an ATPase and autophosphorylating activity and is essential in an in vitro DNA replication system. , 1983, Proceedings of the National Academy of Sciences of the United States of America.

[58]  C. Georgopoulos,et al.  The dnaK protein modulates the heat-shock response of Escherichia coli , 1983, Cell.

[59]  N. Kjeldgaard,et al.  Native Escherichia coli HU protein is a heterotypic dimer , 1979, FEBS letters.

[60]  H. Saito,et al.  Initiation of the DNA replication of bacteriophage lambda in Escherichia coli K12. , 1977, Journal of molecular biology.

[61]  M. M. Bradford A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. , 1976, Analytical biochemistry.

[62]  U. K. Laemmli,et al.  Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4 , 1970, Nature.

[63]  Oliver H. Lowry,et al.  Protein measurement with the Folin phenol reagent. , 1951, The Journal of biological chemistry.

[64]  E. Craig,et al.  Heat-shock proteins as molecular chaperones. , 1994, European journal of biochemistry.

[65]  F. Hartl,et al.  Molecular chaperone functions of heat-shock proteins. , 1993, Annual review of biochemistry.

[66]  S. Wickner,et al.  Genetics and enzymology of DNA replication in Escherichia coli. , 1992, Annual review of genetics.

[67]  R. Morimoto,et al.  Stress proteins in biology and medicine , 1991 .

[68]  G. Milman [30] Expression plasmid containing the λ PL promoter and cI857 repressor , 1987 .

[69]  A. Barrett,et al.  L-trans-Epoxysuccinyl-leucylamido(4-guanidino)butane (E-64) and its analogues as inhibitors of cysteine proteinases including cathepsins B, H and L. , 1982, The Biochemical journal.

[70]  A. D. Hershey,et al.  The Bacteriophage Lambda. , 1971 .