Molecular Evolution of Glutathione S-Transferases in the Genus Drosophila

As classical phase II detoxification enzymes, glutathione S-transferases (GSTs) have been implicated in insecticide resistance and may have evolved in response to toxins in the niche-defining feeding substrates of Drosophila species. We have annotated the GST genes of the 12 Drosophila species with recently sequenced genomes and analyzed their molecular evolution. Gene copy number variation is attributable mainly to unequal crossing-over events in the large δ and ε clusters. Within these gene clusters there are also GST genes with slowly diverging orthologs. This implies that they have their own unique functions or have spatial/temporal expression patterns that impose significant selective constraints. Searches for positively selected sites within the GSTs identified G171K in GSTD1, a protein that has previously been shown to be capable of metabolizing the insecticide DDT. We find that the same radical substitution (G171K) in the substrate-binding domain has occurred at least three times in the Drosophila radiation. Homology-modeling places site 171 distant from the active site but adjacent to an alternative DDT-binding site. We propose that the parallel evolution observed at this site is an adaptive response to an environmental toxin and that sequencing of historical alleles suggests that this toxin was not a synthetic insecticide.

[1]  Melanie A. Huntley,et al.  Evolution of genes and genomes on the Drosophila phylogeny , 2007, Nature.

[2]  M. Berenbaum,et al.  A deficit of detoxification enzymes: pesticide sensitivity and environmental response in the honeybee , 2006, Insect molecular biology.

[3]  Jaekwang Kim,et al.  Identification and characteristics of the structural gene for the Drosophila eye colour mutant sepia, encoding PDA synthase, a member of the omega class glutathione S-transferases. , 2006, The Biochemical journal.

[4]  Benjamin G. Bitler,et al.  Functional genomics of cactus host shifts in Drosophila mojavensis , 2006, Molecular ecology.

[5]  Alan M. Moses,et al.  Widespread Discordance of Gene Trees with Species Tree in Drosophila: Evidence for Incomplete Lineage Sorting , 2006, PLoS genetics.

[6]  John J Welch,et al.  Estimating the Genomewide Rate of Adaptive Protein Evolution in Drosophila , 2006, Genetics.

[7]  F. Ayala,et al.  Positive and Negative Selection in the β-Esterase Gene Cluster of the Drosophila melanogaster Subgroup , 2006, Journal of Molecular Evolution.

[8]  J. Oakeshott,et al.  Comparing the organophosphorus and carbamate insecticide resistance mutations in cholin- and carboxyl-esterases. , 2005, Chemico-biological interactions.

[9]  Masatoshi Nei,et al.  Evolutionary change of the numbers of homeobox genes in bilateral animals. , 2005, Molecular biology and evolution.

[10]  P. Andolfatto Adaptive evolution of non-coding DNA in Drosophila , 2005, Nature.

[11]  J. Hemingway,et al.  Elevated activity of an Epsilon class glutathione transferase confers DDT resistance in the dengue vector, Aedes aegypti. , 2005, Insect biochemistry and molecular biology.

[12]  Matthew W. Hahn,et al.  Estimating the tempo and mode of gene family evolution from comparative genomic data. , 2005, Genome research.

[13]  D. Lynn,et al.  A Genomics Approach to the Detection of Positive Selection in Cattle: , 2005, Genetics.

[14]  J. Jallon,et al.  Molecular basis ofMorinda citrifolia (L.): Toxicity on drosophila , 1994, Journal of Chemical Ecology.

[15]  B. Akgül,et al.  Drosophila glutathione S-transferases. , 2005, Methods in enzymology.

[16]  Ziheng Yang,et al.  Maximum Likelihood Methods for Detecting Adaptive Protein Evolution , 2005 .

[17]  M. P. Cummings PHYLIP (Phylogeny Inference Package) , 2004 .

[18]  J. Hemingway,et al.  Genetic mapping of genes conferring permethrin resistance in the malaria vector, Anopheles gambiae , 2004, Insect molecular biology.

[19]  Masatoshi Nei,et al.  False-positive selection identified by ML-based methods: examples from the Sig1 gene of the diatom Thalassiosira weissflogii and the tax gene of a human T-cell lymphotropic virus. , 2004, Molecular biology and evolution.

[20]  D. Begun,et al.  Strong selective sweep associated with a transposon insertion in Drosophila simulans. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[21]  M. Syvanen,et al.  Glutathione transferase gene family from the housefly Musca domestica , 1994, Molecular and General Genetics MGG.

[22]  B. Hammock,et al.  Genetic and molecular evidence for a trans-acting regulatory locus controlling glutathione S-transferase-2 expression in Aedes aegypti , 1992, Molecular and General Genetics MGG.

[23]  James R. Knight,et al.  A Protein Interaction Map of Drosophila melanogaster , 2003, Science.

[24]  J. Hemingway,et al.  The Anopheles gambiae glutathione transferase supergene family: annotation, phylogeny and expression profiles , 2003, BMC Genomics.

[25]  W. Pearson,et al.  Identification of Residues in Glutathione Transferase Capable of Driving Functional Diversification in Evolution , 2003, The Journal of Biological Chemistry.

[26]  Sharda P. Singh,et al.  Cloning, expression and biochemical characterization of one Epsilon-class (GST-3) and ten Delta-class (GST-1) glutathione S-transferases from Drosophila melanogaster, and identification of additional nine members of the Epsilon class. , 2003, The Biochemical journal.

[27]  Janet Hemingway,et al.  Evolution of Supergene Families Associated with Insecticide Resistance , 2002, Science.

[28]  Matthew R. Pocock,et al.  The Bioperl toolkit: Perl modules for the life sciences. , 2002, Genome research.

[29]  R. ffrench-Constant,et al.  A Single P450 Allele Associated with Insecticide Resistance in Drosophila , 2002, Science.

[30]  Joseph P Bielawski,et al.  Accuracy and power of bayes prediction of amino acid sites under positive selection. , 2002, Molecular biology and evolution.

[31]  R. Nielsen,et al.  Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages. , 2002, Molecular biology and evolution.

[32]  J. Hemingway,et al.  Purification, molecular cloning and heterologous expression of a glutathione S-transferase involved in insecticide resistance from the rice brown planthopper, Nilaparvata lugens. , 2002, The Biochemical journal.

[33]  Adam Eyre-Walker,et al.  Adaptive protein evolution in Drosophila , 2002, Nature.

[34]  J Hemingway,et al.  Identification of a novel class of insect glutathione S-transferases involved in resistance to DDT in the malaria vector Anopheles gambiae. , 2001, The Biochemical journal.

[35]  J Hemingway,et al.  Glutathione S-transferases as antioxidant defence agents confer pyrethroid resistance in Nilaparvata lugens. , 2001, The Biochemical journal.

[36]  A. Papadopoulos,et al.  The role of glutathione S-transferases in the detoxification of some organophosphorus insecticides in larvae and pupae of the yellow mealworm, Tenebrio molitor (Coleoptera: Tenebrionidae). , 2001, Pest management science.

[37]  J. McCarter,et al.  The population genetics of the origin and divergence of the Drosophila simulans complex species. , 2000, Genetics.

[38]  J. Hemingway,et al.  Genetic mapping of two loci affecting DDT resistance in the malaria vector Anopheles gambiae , 2000, Insect molecular biology.

[39]  Kim Rutherford,et al.  Artemis: sequence visualization and annotation , 2000, Bioinform..

[40]  G Chelvanayagam,et al.  Identification, Characterization, and Crystal Structure of the Omega Class Glutathione Transferases* , 2000, The Journal of Biological Chemistry.

[41]  T. Aigaki,et al.  Disruption of the microsomal glutathione S-transferase-like gene reduces life span of Drosophila melanogaster. , 2000, Gene.

[42]  Justin C. Fay,et al.  Hitchhiking under positive Darwinian selection. , 2000, Genetics.

[43]  Z. Yang,et al.  Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models. , 2000, Molecular biology and evolution.

[44]  J. Oakeshott,et al.  The same amino acid substitution in orthologous esterases confers organophosphate resistance on the house fly and a blowfly. , 1999, Insect biochemistry and molecular biology.

[45]  A. Force,et al.  Preservation of duplicate genes by complementary, degenerative mutations. , 1999, Genetics.

[46]  Julio Rozas,et al.  DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis , 1999, Bioinform..

[47]  T. Ishikawa,et al.  Molecular Cloning and Functional Expression of Rat Liver Glutathione-dependent Dehydroascorbate Reductase* , 1998, The Journal of Biological Chemistry.

[48]  H. Huang,et al.  Molecular cloning and heterologous expression of a glutathione S-transferase involved in insecticide resistance from the diamondback moth, Plutella xylostella. , 1998, Insect biochemistry and molecular biology.

[49]  M. Peñalva,et al.  Characterization of a Fungal Maleylacetoacetate Isomerase Gene and Identification of Its Human Homologue* , 1998, The Journal of Biological Chemistry.

[50]  Michael Gribskov,et al.  Combining evidence using p-values: application to sequence homology searches , 1998, Bioinform..

[51]  M. Syvanen,et al.  A complex glutathione transferase gene family in the housefly Musca domestica , 1997, Molecular and General Genetics MGG.

[52]  J. Oakeshott,et al.  A single amino acid substitution converts a carboxylesterase to an organophosphorus hydrolase and confers insecticide resistance on a blowfly. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[53]  D. Eisenberg,et al.  VERIFY3D: assessment of protein models with three-dimensional profiles. , 1997, Methods in enzymology.

[54]  D. Petrov,et al.  High intrinsic rate of DNA loss in Drosophila , 1996, Nature.

[55]  Masahiro Miyazaki,et al.  Cloning and sequencing of the para-type sodium channel gene from susceptible and kdr-resistant German cockroaches (Blattella germanica) and house fly (Musca domestica) , 1996, Molecular and General Genetics MGG.

[56]  David S. Goodsell,et al.  Distributed automated docking of flexible ligands to proteins: Parallel applications of AutoDock 2.4 , 1996, J. Comput. Aided Mol. Des..

[57]  W Stephan,et al.  The hitchhiking effect on the site frequency spectrum of DNA polymorphisms. , 1995, Genetics.

[58]  C. Tu,et al.  Biochemical characterization of Drosophila glutathione S-transferases D1 and D21. , 1994, The Journal of biological chemistry.

[59]  S. Bryant,et al.  Eukaryotic translation elongation factor 1γ contains a glutathione transferase domain—Study of a diverse, ancient protein super family using motif search and structural modeling , 1994, Protein science : a publication of the Protein Society.

[60]  N. Goldman,et al.  A codon-based model of nucleotide substitution for protein-coding DNA sequences. , 1994, Molecular biology and evolution.

[61]  M. Parker,et al.  Crystallization and preliminary X-ray diffraction studies of a glutathione S-transferase from the Australian sheep blowfly, Lucilia cuprina. , 1994, Journal of molecular biology.

[62]  Charles Elkan,et al.  Fitting a Mixture Model By Expectation Maximization To Discover Motifs In Biopolymer , 1994, ISMB.

[63]  J. C. Steichen,et al.  Conservation of cyclodiene insecticide resistance‐associated mutations in insects , 1993, Insect molecular biology.

[64]  T. Hsieh,et al.  The glutathione S-transferase D genes. A divergently organized, intronless gene family in Drosophila melanogaster. , 1993, The Journal of biological chemistry.

[65]  D. Eisenberg,et al.  Assessment of protein models with three-dimensional profiles , 1992, Nature.

[66]  J. Bergé,et al.  Insect glutathione S-transferases. Biochemical characteristics of the major forms from houseflies susceptible and resistant to insecticides. , 1992, The Journal of biological chemistry.

[67]  M. Kreitman,et al.  Adaptive protein evolution at the Adh locus in Drosophila , 1991, Nature.

[68]  W. Pearson Rapid and sensitive sequence comparison with FASTP and FASTA. , 1990, Methods in enzymology.

[69]  F. Tajima Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. , 1989, Genetics.

[70]  A. Ruíz,et al.  Host-plant specificity in the cactophilic Drosophila mulleri species complex , 1988 .

[71]  N. A. Shamaan,et al.  Evidence that DDT-dehydrochlorinase from the house fly is a glutathione S-transferase , 1984 .

[72]  L. J. T. Pas,et al.  Glutathione S-transferase and hydrolytic activity in a tetrachlorvinphos-resistant strain of housefly and their influence on resistance , 1979 .

[73]  Fumio Matsumura,et al.  Toxicology of Insecticides , 1975, Springer US.

[74]  J. M. Smith,et al.  The hitch-hiking effect of a favourable gene. , 1974, Genetical research.

[75]  J. B. Lewis,et al.  Characterization of the resistance mechanisms to diazinon, parathion and diazoxon in the organophosphorus-resistant SKA strain of house flies (Musca domestica L.) , 1971 .