Solution conformations of cyclosporins and magnesium‐cyclosporin complexes determined by vibrational circular dichroism

Vibrational circular dichroism (VCD) spectroscopy was used to investigate the solution conformations of cyclosporins A, C, D, G, and H in CDCl3, in the amide I and NH/OH‐stretching regions, and their corresponding magnesium complexes in CD3CN, in the amide I region. VCD spectra are sensitive to the chiral arrangement of CO and NH bonds in this cyclic undecapeptide. Calculations of molecular geometries, as well as IR and VCD intensities of model cyclosporin fragments that include the intramolecular hydrogen bonds of the crystal conformations of cyclosporins A and H (CsA and CsH), were carried out at the density functional theory (DFT; BPW91 functional/6‐31G* basis set) level. The good agreement between IR and VCD spectra from experiment and DFT calculations provides evidence that the crystal conformation of CsA is dominant in CDCl3 solution; CsH, however, assumes both an intramolecularly hydrogen‐bonded crystal conformation and more open forms in solution. Comparisons of the experimental and calculated VCD spectra in the NH/OH‐stretching region of the noncomplexed cyclosporins indicate that conformers with both free and hydrogen‐bonded NH and OH groups are present in solution. Differences between the IR and VCD spectra for the metal‐free and magnesium‐complexed cyclosporins are indicative of strong interactions between cyclosporins and magnesium ions. © 2003 Wiley Periodicals, Inc. Biopolymers 73: 163–177, 2004

[1]  Molecular modeling studies in the complex between cyclophilin and cyclosporin A. , 1992, Protein engineering.

[2]  D. Seebach,et al.  Novel backbone conformation of cyclosporin A: the complex with lithium chloride , 1992 .

[3]  Stuart L. Schreiber,et al.  Calcineurin is a common target of cyclophilin-cyclosporin A and FKBP-FK506 complexes , 1991, Cell.

[4]  M. Diem,et al.  Vibrational circular dichroism in amino acids and peptides. 1. Alanine , 1977 .

[5]  L. Nafie,et al.  Optical activity arising from carbon-13 substitution: vibrational circular dichroism study of (2S,3S)-cyclopropane-1-13C,2H-2,3-2H2 , 1991 .

[6]  M. Walkinshaw,et al.  X-ray structure of a decameric cyclophilin-cyclosporin crystal complex , 1993, Nature.

[7]  M. Hollósi,et al.  Crystal Structure of cyclo-(Gly-l-Pro-l-Pro-Gly-l-Pro-l-Pro) Trihydrate. Unusual Conformational Characteristics of a Cyclic Hexapeptide , 1982 .

[8]  H. H. Mantsch,et al.  Solvent influence on the conformation of cyclosporin. An FT-IR study , 1993 .

[9]  K Wüthrich,et al.  The NMR structure of cyclosporin A bound to cyclophilin in aqueous solution. , 1991, Biochemistry.

[10]  H. Gremlich,et al.  Infrared and Raman Spectroscopy of Biological Materials , 2000 .

[11]  Armin Widmer,et al.  Peptide conformations. Part 31. The conformation of cyclosporin a in the crystal and in solution , 1985 .

[12]  R. J. P. Williams,et al.  Tilden Lecture. The biochemistry of sodium, potassium, magnesium, and calcium , 1970 .

[13]  T. Keiderling,et al.  Vibrational Circular Dichroism of polypeptides. 8. Poly(lysine) conformations as a function of pH in aqueous solution , 1986 .

[14]  L. Nafie,et al.  Hydrogen Stretching Vibrational Circular Dichroism in Methyl Lactate and Related Molecules , 1999 .

[15]  Horst Kessler,et al.  Reinvestigation of the Conformation of Cyclosporin A in Chloroform , 1990 .

[16]  G. Wider,et al.  Cyclosporin A—cyclophilin complex formation A model based on X‐ray and NMR data , 1992, FEBS letters.

[17]  R. Traber,et al.  Die Struktur von Cyclosporin C , 1977 .

[18]  T. Keiderling,et al.  Enhanced sensitivity to conformation in various proteins. Vibrational circular dichroism results. , 1989, Biochemistry.

[19]  Berthold Von Freyberg,et al.  Receptor-induced conformation change of the immunosuppressant cyclosporin A. , 1991, Science.

[20]  E. Blout,et al.  Cyclic peptides. 17. Metal and amino acid complexes of cyclo(pro-gly)4 and analogues studied by nuclear magnetic resonance and circular dichroism. , 1977, Journal of the American Chemical Society.

[21]  P. Stephens,et al.  Determination of the structure of chiral molecules using ab initio vibrational circular dichroism spectroscopy. , 2000, Chirality.

[22]  P. Twentyman Cyclosporins as drug resistance modifiers. , 1992, Biochemical pharmacology.

[23]  J. Borel Pharmacology of cyclosporine (sandimmune). IV. Pharmacological properties in vivo. , 1990, Pharmacological reviews.

[24]  E. Blout,et al.  Cyclic peptides. IX. Conformations of a synthetic ion-binding cyclic peptide, cyclo-(pro-gly)3, from circular dichroism and 1H and 13C nuclear magnetic resonance. , 1974, Journal of the American Chemical Society.

[25]  Philip J. Stephens,et al.  Ab initio calculation of atomic axial tensors and vibrational rotational strengths using density functional theory , 1996 .

[26]  C. Klee,et al.  Calcineurin phosphatase activity in T lymphocytes is inhibited by FK 506 and cyclosporin A. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[27]  G. Crabtree,et al.  Cyclosporin A specifically inhibits function of nuclear proteins involved in T cell activation. , 1989, Science.

[28]  D. Seebach,et al.  Solubilization of Peptides in Non‐polar Organic Solvents by the Addition of Inorganic Salts: Facts and Implications , 1989 .

[29]  Y. Thériault,et al.  Solution structure of the cyclosporin A/cyclophilin complex by NMR , 1993, Nature.

[30]  K. Varughese,et al.  Conformation of cyclo(-L-Pro-Gly-)(3) and its Ca and Mg complexes. , 1982, Proceedings of the National Academy of Sciences of the United States of America.

[31]  L. Nafie,et al.  Vibrational circular dichroism: an incisive tool for stereochemical applications. , 1998, Enantiomer.

[32]  P. Maurel,et al.  Metabolism of the new immunosuppressor cyclosporin G by human liver cytochromes P450. , 1996, Biochemical pharmacology.

[33]  L. Nafie,et al.  Step-Scan Fourier Transform Vibrational Circular Dichroism Measurements in the Vibrational Region above 2000 cm−1 , 1997 .

[34]  H. Mantsch,et al.  Conformational changes in the cyclic undecapeptide cyclosporin induced by interaction with metal ions. An FTIR study. , 1994, International journal of biological macromolecules.

[35]  V. Havlíček,et al.  Synthesis and Crystal Structure Determination of Cyclosporin H , 2000 .

[36]  M. Walkinshaw,et al.  X-ray structure of a monomeric cyclophilin A-cyclosporin A crystal complex at 2.1 A resolution. , 1993, Journal of molecular biology.

[37]  T. Keiderling,et al.  Optical spectroscopic investigations of model beta-sheet hairpins in aqueous solution. , 2003, Journal of the American Chemical Society.

[38]  L. Nafie Vibrational Optical Activity , 1996 .

[39]  L. Nafie,et al.  Comparison of Step-Scan and Rapid-Scan Approaches to the Measurement of Mid-Infrared Fourier Transform Vibrational Circular Dichroism , 1997 .

[40]  Olga Kennard,et al.  Geometry of the nitrogen-hydrogen...oxygen-carbon (N-H...O:C) hydrogen bond. 2. Three-center (bifurcated) and four-center (trifurcated) bonds , 1984 .

[41]  Ashok Pandey,et al.  The panorama of cyclosporin research , 1996, Journal of basic microbiology.

[42]  N. Berova,et al.  Circular Dichroism: Principles and Applications , 1994 .

[43]  M. Paterlini,et al.  Vibrational circular dichroism spectra of three conformationally distinct states and an unordered state of poly(L‐lysine) in deuterated aqueous solution , 1986, Biopolymers.

[44]  M. Hollósi,et al.  Conformations of proline-containing cyclic peptides. II. Asymmetric solution conformations of cyclo-(L-Pro2-Gly)2 and its alkaline-earth metal complexes as studied by NMR spectroscopy , 1980 .

[45]  M. Diem,et al.  Vibrational circular dichroism in amino acids and peptides. 2. Simple alanyl peptides , 1978 .

[46]  A. Burgess,et al.  Modeling conformational changes in cyclosporin A , 1995, Protein science : a publication of the Protein Society.

[47]  I. Karle Conformational changes in cyclic (D-Phe-Pro-Gly-D-Ala-Pro) upon complexation with Mg++. , 2009, International journal of peptide and protein research.

[48]  P. Bouř,et al.  Ab Initio Simulations of the Vibrational Circular Dichroism of Coupled Peptides , 1993 .

[49]  K. Wüthrich,et al.  Three‐dimensional structure and actions of immunosuppressants and their immunophilins , 1995, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.