Identification of miRNAs and their targets in wild tomato at moderately and acutely elevated temperatures by high-throughput sequencing and degradome analysis

[1]  K. H. Kjaer,et al.  Screening and validation of tomato genotypes under heat stress using Fv/Fm to reveal the physiological mechanism of heat tolerance , 2015 .

[2]  Fuli Liu,et al.  Conserved and novel heat stress-responsive microRNAs were identified by deep sequencing in Saccharina japonica (Laminariales, Phaeophyta). , 2015, Plant, cell & environment.

[3]  Y. Kawahara,et al.  Implications of miR166 and miR159 induction to the basal response mechanisms of an andigena potato (Solanum tuberosum subsp. andigena) to salinity stress, predicted from network models in Arabidopsis. , 2015, Genome.

[4]  R. Zhou,et al.  Identification of chilling stress-responsive tomato microRNAs and their target genes by high-throughput sequencing and degradome analysis , 2014, BMC Genomics.

[5]  J. Zhang,et al.  Photosynthesis and ultrastructure of photosynthetic apparatus in tomato leaves under elevated temperature , 2014, Photosynthetica.

[6]  N. Sarla,et al.  Comparative Study of Susceptible and Tolerant Genotype Reveals Efficient Recovery and Root System Contributes to Heat Stress Tolerance in Rice , 2014, Plant Molecular Biology Reporter.

[7]  Ying Liang,et al.  Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis , 2014, BMC Genomics.

[8]  Jianhua Zhu,et al.  Heat stress induction of miR398 triggers a regulatory loop that is critical for thermotolerance in Arabidopsis. , 2013, The Plant journal : for cell and molecular biology.

[9]  W. Yin,et al.  Identification of drought-responsive and novel Populus trichocarpa microRNAs by high-throughput sequencing and their targets using degradome analysis , 2013, BMC Genomics.

[10]  X. Deng,et al.  Global identification of miRNAs and targets in Populus euphratica under salt stress , 2013, Plant Molecular Biology.

[11]  Xiyan Yang,et al.  Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis , 2013, Journal of experimental botany.

[12]  Z. Ye,et al.  Differential Modulation of Photosynthesis, Signaling, and Transcriptional Regulation between Tolerant and Sensitive Tomato Genotypes under Cold Stress , 2012, PloS one.

[13]  Yuanyuan Ren,et al.  Genome-wide identification and expression analysis of heat-responsive and novel microRNAs in Populus tomentosa. , 2012, Gene.

[14]  X. Xia,et al.  A Combined Approach of High-Throughput Sequencing and Degradome Analysis Reveals Tissue Specific Expression of MicroRNAs and Their Targets in Cucumber , 2012, PloS one.

[15]  M. Cariaso,et al.  Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa , 2011, Journal of experimental botany.

[16]  Lu Wang,et al.  A novel class of heat-responsive small RNAs derived from the chloroplast genome of Chinese cabbage (Brassica rapa) , 2011, BMC Genomics.

[17]  W. Yin,et al.  Genome-wide characterization of new and drought stress responsive microRNAs in Populus euphratica , 2011, Journal of experimental botany.

[18]  E. Schleiff,et al.  Crosstalk between Hsp90 and Hsp70 Chaperones and Heat Stress Transcription Factors in Tomato[W] , 2011, Plant Cell.

[19]  Mingming Xin,et al.  Diverse set of microRNAs are responsive to powdery mildew infection and heat stress in wheat (Triticum aestivum L.) , 2010, BMC Plant Biology.

[20]  N. Ye,et al.  Identification of miRNA from Porphyra yezoensis by High-Throughput Sequencing and Bioinformatics Analysis , 2010, PloS one.

[21]  Zhaorong Ma,et al.  Arabidopsis lyrata Small RNAs: Transient MIRNA and Small Interfering RNA Loci within the Arabidopsis Genus[W][OA] , 2010, Plant Cell.

[22]  W. Vriezen,et al.  Developmental and heat stress-regulated expression of HsfA2 and small heat shock proteins in tomato anthers , 2009, Journal of Experimental Botany.

[23]  K. Chong,et al.  Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response , 2009, BMC Genomics.

[24]  E. Pressman,et al.  Transcriptional profiling of maturing tomato (Solanum lycopersicum L.) microspores reveals the involvement of heat shock proteins, ROS scavengers, hormones, and sugars in the heat stress response , 2009, Journal of experimental botany.

[25]  I. Small,et al.  Pentatricopeptide repeat proteins: a socket set for organelle gene expression. , 2008, Trends in plant science.

[26]  D. Bartel,et al.  Criteria for Annotation of Plant MicroRNAs , 2008, The Plant Cell Online.

[27]  R. Sunkar,et al.  The role of microRNAs and other endogenous small RNAs in plant stress responses. , 2008, Biochimica et biophysica acta.

[28]  Weixiong Zhang,et al.  Identification of cold-inducible microRNAs in plants by transcriptome analysis. , 2008, Biochimica et biophysica acta.

[29]  D. Bartel,et al.  Endogenous siRNA and miRNA Targets Identified by Sequencing of the Arabidopsis Degradome , 2008, Current Biology.

[30]  Ralf Bundschuh,et al.  Small RNAs in tomato fruit and leaf development. , 2008, Biochimica et biophysica acta.

[31]  A. Wahid,et al.  Heat tolerance in plants: An overview , 2007 .

[32]  Stijn van Dongen,et al.  miRBase: tools for microRNA genomics , 2007, Nucleic Acids Res..

[33]  W. Filipowicz,et al.  Repression of protein synthesis by miRNAs: how many mechanisms? , 2007, Trends in cell biology.

[34]  Jason S. Cumbie,et al.  High-Throughput Sequencing of Arabidopsis microRNAs: Evidence for Frequent Birth and Death of MIRNA Genes , 2007, PloS one.

[35]  D. Bartel,et al.  MicroRNAS and their regulatory roles in plants. , 2006, Annual review of plant biology.

[36]  D. Bartel,et al.  AGO1 homeostasis entails coexpression of MIR168 and AGO1 and preferential stabilization of miR168 by AGO1. , 2006, Molecular cell.

[37]  Juan José Alarcón,et al.  Changes in photosynthetic parameters and antioxidant activities following heat-shock treatment in tomato plants. , 2006, Functional plant biology : FPB.

[38]  F. Tang,et al.  MicroRNA expression profiling of single whole embryonic stem cells , 2006, Nucleic acids research.

[39]  Mark H. Wright,et al.  The SOL Genomics Network. A Comparative Resource for Solanaceae Biology and Beyond1 , 2005, Plant Physiology.

[40]  J. Alarcón,et al.  High temperature effects on photosynthetic activity of two tomato cultivars with different heat susceptibility. , 2005, Journal of plant physiology.

[41]  C. Kidner,et al.  The developmental role of microRNA in plants. , 2005, Current opinion in plant biology.

[42]  Yves Van de Peer,et al.  Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences , 2004, Bioinform..

[43]  Yuichiro Watanabe,et al.  Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[44]  Lin He,et al.  MicroRNAs: small RNAs with a big role in gene regulation , 2004, Nature Reviews Genetics.

[45]  A. Altman,et al.  Role of plant heat-shock proteins and molecular chaperones in the abiotic stress response. , 2004, Trends in plant science.

[46]  D. Bartel.  MicroRNAs Genomics, Biogenesis, Mechanism, and Function , 2004, Cell.

[47]  Kil-Jae Lee,et al.  Acquired tolerance to temperature extremes. , 2003, Trends in plant science.

[48]  C. Joshi,et al.  Conserved sequence motifs in plant S-adenosyl-L-methionine-dependent methyltransferases , 1998, Plant Molecular Biology.

[49]  Mary M. Peet,et al.  Comparing heat stress effects on male‐fertile and male‐sterile tomatoes , 1998 .

[50]  Jie Sun,et al.  Identification of miRNAs and their targets from Brassica napus by high-throughput sequencing and degradome analysis , 2012, BMC Genomics.

[51]  Webb Miller,et al.  CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets , 2009, Bioinform..

[52]  Mihaela Zavolan,et al.  Computational analysis of small RNA cloning data. , 2008, Methods.

[53]  L. Hinzman,et al.  Observations: Changes in Snow, Ice and Frozen Ground , 2007 .

[54]  Jeong Hee Lee,et al.  AnHsp70 antisense gene affects the expression of HSP70/HSC70, the regulation of HSF, and the acquisition of thermotolerance in transgenicArabidopsis thaliana , 2005, Molecular and General Genetics MGG.

[55]  E. Vierling.  The Roles of Heat Shock Proteins in Plants , 1991 .