Proteogenomic analysis of the total and surface-exposed proteomes of Plasmodium vivax salivary gland sporozoites
暂无分享,去创建一个
Jetsumon Sattabongkot | Robert L Moritz | Kristian E. Swearingen | R. Moritz | A. Vaughan | S. Kappe | J. Sattabongkot | A. Jex | S. Lindner | C. Koepfli | R. Morrison | S. Mikolajczak | Stefan H I Kappe | Cristian Koepfli | Scott E Lindner | Ashley M Vaughan | Sebastian A Mikolajczak | Kristian E Swearingen | Erika L Flannery | Robert D Morrison | Rapatbhorn Patrapuvich | Ivo Muller | Aaron Jex | I. Muller | Rapatbhorn Patrapuvich | E. Flannery | Ivo Muller
[1] J. Baird. Eliminating malaria—all of them , 2010, The Lancet.
[2] K. Julenius. NetCGlyc 1.0: prediction of mammalian C-mannosylation sites. , 2007, Glycobiology.
[3] K. Resing,et al. Comparison of Label-free Methods for Quantifying Human Proteins by Shotgun Proteomics*S , 2005, Molecular & Cellular Proteomics.
[4] Kristian E. Swearingen,et al. Total and Putative Surface Proteomics of Malaria Parasite Salivary Gland Sporozoites* , 2013, Molecular & Cellular Proteomics.
[5] Luis Mendoza,et al. Trans‐Proteomic Pipeline, a standardized data processing pipeline for large‐scale reproducible proteomics informatics , 2015, Proteomics. Clinical applications.
[6] Erika L. Flannery,et al. Transcriptome and histone epigenome of Plasmodium vivax salivary-gland sporozoites point to tight regulatory control and potential mechanisms for liver-stage differentiation , 2018, bioRxiv.
[7] Michael B. Doud,et al. Unexpected fold in the circumsporozoite protein target of malaria vaccines , 2012, Proceedings of the National Academy of Sciences.
[8] Eileen Kraemer,et al. PlasmoDB: a functional genomic database for malaria parasites , 2008, Nucleic Acids Res..
[9] K. Miura,et al. Functional Analysis of the Leading Malaria Vaccine Candidate AMA-1 Reveals an Essential Role for the Cytoplasmic Domain in the Invasion Process , 2009, PLoS pathogens.
[10] J F Vliegenthart,et al. New type of linkage between a carbohydrate and a protein: C-glycosylation of a specific tryptophan residue in human RNase Us. , 1994, Biochemistry.
[11] Joshua E Elias,et al. The phosphoproteomes of Plasmodium falciparum and Toxoplasma gondii reveal unusual adaptations within and beyond the parasites' boundaries. , 2011, Cell host & microbe.
[12] A. Tobin,et al. Global kinomic and phospho-proteomic analyses of the human malaria parasite Plasmodium falciparum. , 2011, Nature communications.
[13] Vasant G Honavar,et al. PlasmoSEP: Predicting surface-exposed proteins on the malaria parasite using semisupervised self-training and expert-annotated data , 2016, Proteomics.
[14] S. Hoffman,et al. Pre-erythrocytic-stage immune effector mechanisms in Plasmodium spp. infections. , 1997, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[15] M. Sternberg,et al. Proteomic analysis of Plasmodium in the mosquito: progress and pitfalls , 2012, Parasitology.
[16] S. Kappe,et al. SSP3 Is a Novel Plasmodium yoelii Sporozoite Surface Protein with a Role in Gliding Motility , 2014, Infection and Immunity.
[17] Sugar activation and glycosylation in Plasmodium , 2015, Malaria Journal.
[18] S. Ralph,et al. Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum , 2012, Genome Biology.
[19] John R. Yates,et al. Direct Detection of Biotinylated Proteins by Mass Spectrometry , 2014, Journal of proteome research.
[20] T. Richie,et al. Protective Efficacy of Plasmodium vivax Radiation-Attenuated Sporozoites in Colombian Volunteers: A Randomized Controlled Trial , 2016, PLoS neglected tropical diseases.
[21] N. Waters,et al. Targeting protein kinases in the malaria parasite: update of an antimalarial drug target. , 2012, Current topics in medicinal chemistry.
[22] John R Yates,et al. A Comprehensive Survey of the Plasmodium Life Cycle by Genomic, Transcriptomic, and Proteomic Analyses , 2005, Science.
[23] Jonathan E. Allen,et al. Genome sequence of the human malaria parasite Plasmodium falciparum , 2002, Nature.
[24] L. Aravind,et al. Structure of the Plasmodium 6-cysteine s48/45 domain , 2012, Proceedings of the National Academy of Sciences.
[25] S. Brunak,et al. SignalP 4.0: discriminating signal peptides from transmembrane regions , 2011, Nature Methods.
[26] A. Holder,et al. The Plasmodium falciparum schizont phosphoproteome reveals extensive phosphatidylinositol and cAMP-protein kinase A signaling. , 2012, Journal of proteome research.
[27] J. Martínez-Barnetche,et al. Conserved peptide sequences bind to actin and enolase on the surface of Plasmodium berghei ookinetes , 2011, Parasitology.
[28] R. Aebersold,et al. A statistical model for identifying proteins by tandem mass spectrometry. , 2003, Analytical chemistry.
[29] J. Leigh,et al. Comparison of spectral counting and metabolic stable isotope labeling for use with quantitative microbial proteomics. , 2006, The Analyst.
[30] Edward L Huttlin,et al. Global analysis of protein expression and phosphorylation of three stages of Plasmodium falciparum intraerythrocytic development. , 2013, Journal of proteome research.
[31] Alexey I Nesvizhskii,et al. Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. , 2002, Analytical chemistry.
[32] M. White,et al. Theoretical Implications of a Pre-Erythrocytic Plasmodium vivax Vaccine for Preventing Relapses , 2017, Trends in parasitology.
[33] Alexey I Nesvizhskii,et al. Abacus: A computational tool for extracting and pre‐processing spectral count data for label‐free quantitative proteomic analysis , 2011, Proteomics.
[34] J. Eng,et al. Comet: An open‐source MS/MS sequence database search tool , 2013, Proteomics.
[35] F. Frischknecht,et al. Critical Role for Heat Shock Protein 20 (HSP20) in Migration of Malarial Sporozoites* , 2011, The Journal of Biological Chemistry.
[36] Lauren W. Wang,et al. Post-translational Modification of Thrombospondin Type-1 Repeats in ADAMTS-like 1/Punctin-1 by C-Mannosylation of Tryptophan* , 2009, The Journal of Biological Chemistry.
[37] M. Grainger,et al. Extensive differential protein phosphorylation as intraerythrocytic Plasmodium falciparum schizonts develop into extracellular invasive merozoites , 2015, Proteomics.
[38] Jetsumon Sattabongkot,et al. Determination of the Plasmodium vivax schizont stage proteome. , 2011, Journal of proteomics.
[39] Kristian E. Swearingen,et al. Interrogating the Plasmodium Sporozoite Surface: Identification of Surface-Exposed Proteins and Demonstration of Glycosylation on CSP and TRAP by Mass Spectrometry-Based Proteomics , 2016, PLoS pathogens.
[40] C. Ockenhouse,et al. The RTS,S vaccine candidate for malaria , 2011, Expert review of vaccines.
[41] A. Vaughan,et al. A rapid and scalable density gradient purification method for Plasmodium sporozoites , 2012, Malaria Journal.
[42] Satish Mishra,et al. A Novel and Conserved Plasmodium Sporozoite Membrane Protein SPELD is Required for Maturation of Exo-erythrocytic Forms , 2017, Scientific Reports.
[43] John R Yates,et al. Proteomics approach reveals novel proteins on the surface of malaria-infected erythrocytes. , 2004, Molecular and biochemical parasitology.
[44] K. Garcia,et al. Structural basis for Notch1 engagement of Delta-like 4 , 2015, Science.
[45] J. V. Staros,et al. N-hydroxysulfosuccinimide active esters: bis(N-hydroxysulfosuccinimide) esters of two dicarboxylic acids are hydrophilic, membrane-impermeant, protein cross-linkers. , 1982, Biochemistry.
[46] R. Price,et al. A new Plasmodium vivax reference sequence with improved assembly of the subtelomeres reveals an abundance of pir genes , 2016, Wellcome open research.
[47] Kristian E. Swearingen,et al. Transcriptome and histone epigenome of Plasmodium vivax salivary-gland sporozoites point to tight regulatory control and potential mechanisms for liver-stage differentiation , 2017, bioRxiv.
[48] Teun Bousema,et al. Epidemiology and Infectivity of Plasmodium falciparum and Plasmodium vivax Gametocytes in Relation to Malaria Control and Elimination , 2011, Clinical Microbiology Reviews.
[49] A. Sicard,et al. Malaria: targeting parasite and host cell kinomes. , 2010, Biochimica et biophysica acta.
[50] R. Price,et al. New developments in Plasmodium vivax malaria: severe disease and the rise of chloroquine resistance , 2009, Current opinion in infectious diseases.
[51] Edwin Lasonder,et al. Protein Export Marks the Early Phase of Gametocytogenesis of the Human Malaria Parasite Plasmodium falciparum* , 2010, Molecular & Cellular Proteomics.
[52] P. Zipfel,et al. Malaria parasites co-opt human factor H to prevent complement-mediated lysis in the mosquito midgut. , 2013, Cell host & microbe.
[53] M. Davenport,et al. Modeling the Dynamics of Plasmodium vivax Infection and Hypnozoite Reactivation In Vivo , 2015, PLoS neglected tropical diseases.
[54] R. Tewari,et al. An Apicomplexan Actin-Binding Protein Serves as a Connector and Lipid Sensor to Coordinate Motility and Invasion. , 2016, Cell host & microbe.
[55] David L. Tabb,et al. A proteomic view of the Plasmodium falciparum life cycle , 2002, Nature.
[56] N. White,et al. Chapter Two - Relapse , 2012 .
[57] Robert Burke,et al. ProteoWizard: open source software for rapid proteomics tools development , 2008, Bioinform..
[58] Jonathan Crabtree,et al. Comparative genomics of the neglected human malaria parasite Plasmodium vivax , 2008, Nature.
[59] N. White. Determinants of relapse periodicity in Plasmodium vivax malaria , 2011, Malaria Journal.
[60] Patricia De la Vega,et al. Discovery of Gene Function by Expression Profiling of the Malaria Parasite Life Cycle , 2003, Science.
[61] B. Maček,et al. C-Mannosylation and O-Fucosylation of the Thrombospondin Type 1 Module* , 2001, The Journal of Biological Chemistry.
[62] Bart Barrell,et al. A superfamily of variant genes encoded in the subtelomeric region of Plasmodium vivax , 2001, Nature.
[63] Utpal Tatu,et al. A glimpse into the clinical proteome of human malaria parasites Plasmodium falciparum and Plasmodium vivax , 2009, Proteomics. Clinical applications.
[64] T. Springer,et al. Structures of the Toxoplasma gliding motility adhesin , 2014, Proceedings of the National Academy of Sciences.
[65] M. Patarroyo,et al. Determining the Plasmodium vivax VCG-1 strain blood stage proteome. , 2015, Journal of proteomics.
[66] H. Ishida,et al. Molecular cloning and characterization of a novel human beta1,3-glucosyltransferase, which is localized at the endoplasmic reticulum and glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domain. , 2006, Glycobiology.
[67] Eric W. Deutsch,et al. Combining Results of Multiple Search Engines in Proteomics* , 2013, Molecular & Cellular Proteomics.
[68] T. Bousema,et al. Integrated transcriptomic and proteomic analyses of P. falciparum gametocytes: molecular insight into sex-specific processes and translational repression , 2016, Nucleic acids research.
[69] S. Thiberge,et al. Apical membrane antigen 1 mediates apicomplexan parasite attachment but is dispensable for host cell invasion , 2013, Nature Communications.
[70] Benjamin F. Cravatt,et al. Global Profiling of Proteolysis during Rupture of Plasmodium falciparum from the Host Erythrocyte , 2010, Molecular & Cellular Proteomics.
[71] Xiaofang Jiang,et al. Genome analysis of a major urban malaria vector mosquito, Anopheles stephensi , 2014, Genome Biology.
[72] Hyung-Hwan Kim,et al. Molecular cloning and expression of the VK247 circumsporozoite protein for serodiagnosis of variant form Plasmodium vivax , 2011, Parasitology Research.
[73] Richard D. Smith,et al. Normalization and missing value imputation for label-free LC-MS analysis , 2012, BMC Bioinformatics.
[74] L. Meijer,et al. Antimalarial drug discovery: targeting protein kinases , 2007, Expert opinion on therapeutic targets.
[75] A. Krogh,et al. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. , 2001, Journal of molecular biology.
[76] Martijn A. Huynen,et al. Proteomic Profiling of Plasmodium Sporozoite Maturation Identifies New Proteins Essential for Parasite Development and Infectivity , 2008, PLoS pathogens.
[77] R. Price,et al. Primaquine radical cure of Plasmodium vivax: a critical review of the literature , 2012, Malaria Journal.
[78] Yi Zhang,et al. Cell Surface Relocalization of the Endoplasmic Reticulum Chaperone and Unfolded Protein Response Regulator GRP78/BiP* , 2010, The Journal of Biological Chemistry.
[79] N. Waters,et al. Rationale for Further Development of a Vaccine Based on the Circumsporozoite Protein of Plasmodium vivax , 2017, PLoS neglected tropical diseases.
[80] T. Springer,et al. Shape change in the receptor for gliding motility in Plasmodium sporozoites , 2012, Proceedings of the National Academy of Sciences.
[81] J. Baird,et al. Targeting the hypnozoite reservoir of Plasmodium vivax: the hidden obstacle to malaria elimination. , 2010, Trends in parasitology.
[82] Joshua D. Hartzell,et al. Phase 1/2a Trial of Plasmodium vivax Malaria Vaccine Candidate VMP001/AS01B in Malaria-Naive Adults: Safety, Immunogenicity, and Efficacy , 2016, PLoS neglected tropical diseases.
[83] Pier Luigi Martelli,et al. PredGPI: a GPI-anchor predictor , 2008, BMC Bioinformatics.
[84] M. Washburn,et al. Refinements to label free proteome quantitation: how to deal with peptides shared by multiple proteins. , 2010, Analytical chemistry.
[85] David C Muddiman,et al. Evaluation of Normalization Methods on GeLC-MS/MS Label-Free Spectral Counting Data to Correct for Variation during Proteomic Workflows , 2011, Journal of the American Society for Mass Spectrometry.
[86] Michael K. Coleman,et al. Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae. , 2006, Journal of proteome research.
[87] A. W. Woodruff,et al. Advances in Parasitology , 2019, Highlighting Operational and Implementation Research for Control of Helminthiasis.
[88] B. Maček,et al. Direct determination of glycosylation sites in O-fucosylated glycopeptides using nano-electrospray quadrupole time-of-flight mass spectrometry. , 2001, Rapid communications in mass spectrometry : RCM.
[89] Sandra Gesing,et al. VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases , 2014, Nucleic Acids Res..
[90] W. Mccarthy,et al. Primaquine failure and cytochrome P-450 2D6 in Plasmodium vivax malaria. , 2013, The New England journal of medicine.
[91] J. Hofsteenge,et al. Identification and Characterization of aβ1,3-Glucosyltransferase That Synthesizes the Glc-β1,3-Fuc Disaccharide on Thrombospondin Type 1 Repeats* , 2006, Journal of Biological Chemistry.