Biased Brownian stepping rotation of FoF1-ATP synthase driven by proton motive force

FoF1-ATP synthase (FoF1) produces most of the ATP in cells, uniquely, by converting the proton motive force (pmf) into ATP production via mechanical rotation of the inner rotor complex. Technical difficulties have hampered direct investigation of pmf-driven rotation, which are crucial to elucidating the chemomechanical coupling mechanism of FoF1. Here we develop a novel supported membrane system for direct observation of the rotation of FoF1 driven by pmf that was formed by photolysis of caged protons. Upon photolysis, FoF1 initiated rotation in the opposite direction to that of the ATP-driven rotation. The step size of pmf-driven rotation was 120°, suggesting that the kinetic bottleneck is a catalytic event on F1 with threefold symmetry. The reaction equilibrium was slightly biased to ATP synthesis like under physiological conditions, and FoF1 showed highly stochastic behaviour, frequently making a 120° backward step. This new experimental system would be applicable to single-molecule study of other membrane proteins.

[1]  G. Cingolani,et al.  Structure of the ATP synthase catalytic complex (F1) from Escherichia coli in an auto-inhibited conformation , 2011, Nature Structural &Molecular Biology.

[2]  R. H. Fillingame,et al.  The preferred stoichiometry of c subunits in the rotary motor sector of Escherichia coli ATP synthase is 10 , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[3]  J. Weber Structural biology: Toward the ATP synthase mechanism. , 2010, Nature chemical biology.

[4]  Hendrik Sielaff,et al.  Torque generation and elastic power transmission in the rotary FOF1-ATPase , 2009, Nature.

[5]  Thomas Meier,et al.  Catalytic and mechanical cycles in F‐ATP synthases , 2006, EMBO reports.

[6]  Kazuhiko Kinosita,et al.  Direct observation of the rotation of F1-ATPase , 1997, Nature.

[7]  Masasuke Yoshida,et al.  Thermophilic ATP synthase has a decamer c-ring: indication of noninteger 10:3 H+/ATP ratio and permissive elastic coupling. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[8]  R. Iino,et al.  Phosphate release in F1-ATPase catalytic cycle follows ADP release. , 2010, Nature chemical biology.

[9]  Robert R. Ishmukhametov,et al.  Single molecule measurements of F1-ATPase reveal an interdependence between the power stroke and the dwell duration. , 2009, Biochemistry.

[10]  Jan Pieter Abrahams,et al.  Structure at 2.8 Â resolution of F1-ATPase from bovine heart mitochondria , 1994, Nature.

[11]  Hendrik Sielaff,et al.  Domain compliance and elastic power transmission in rotary FOF1-ATPase , 2008, Proceedings of the National Academy of Sciences.

[12]  P. Boyer,et al.  Evidence for energy-dependent change in phosphate binding for mitochondrial oxidative phosphorylation based on measurements of medium and intermediate phosphate-water exchanges. , 1977, The Journal of biological chemistry.

[13]  P. Dimroth,et al.  Unique rotary ATP synthase and its biological diversity. , 2008, Annual review of biophysics.

[14]  R. Iino,et al.  Mechanism of Inhibition by C-terminal α-Helices of the ϵ Subunit of Escherichia coli FoF1-ATP Synthase* , 2009, The Journal of Biological Chemistry.

[15]  Hendrik Sielaff,et al.  Two rotary motors in F-ATP synthase are elastically coupled by a flexible rotor and a stiff stator stalk , 2011, Proceedings of the National Academy of Sciences.

[16]  Hiroyuki Fujita,et al.  Highly coupled ATP synthesis by F1-ATPase single molecules , 2005, Nature.

[17]  Hiroyuki Noji,et al.  Simple dark-field microscopy with nanometer spatial precision and microsecond temporal resolution. , 2010, Biophysical journal.

[18]  Shoichi Toyabe,et al.  Thermodynamic efficiency and mechanochemical coupling of F1-ATPase , 2011, Proceedings of the National Academy of Sciences.

[19]  R. H. Fillingame,et al.  H+-ATPase activity of Escherichia coli F1F0 is blocked after reaction of dicyclohexylcarbodiimide with a single proteolipid (subunit c) of the F0 complex. , 1989, The Journal of biological chemistry.

[20]  K. Saito,et al.  ATP synthase F(1) sector rotation. Defective torque generation in the beta subunit Ser-174 to Phe mutant and its suppression by second mutations. , 2001, The Journal of biological chemistry.

[21]  P. Dimroth,et al.  Fourth in the Cycles Review Series , 2006 .

[22]  Masasuke Yoshida,et al.  Mechanical modulation of catalytic power on F1-ATPase. , 2011, Nature chemical biology.

[23]  Michael Börsch,et al.  36° step size of proton‐driven c‐ring rotation in FoF1‐ATP synthase , 2009, The EMBO journal.

[24]  Michael Börsch,et al.  Movements of the ε‐subunit during catalysis and activation in single membrane‐bound H+‐ATP synthase , 2005 .

[25]  W. Junge,et al.  Intersubunit rotation in active F-ATPase , 1996, Nature.

[26]  S. Oiki,et al.  Surface Structure and Its Dynamic Rearrangements of the KcsA Potassium Channel upon Gating and Tetrabutylammonium Blocking* , 2006, Journal of Biological Chemistry.

[27]  Kevin Burgess,et al.  Fluorescent indicators for intracellular pH. , 2010, Chemical reviews.

[28]  N. Zarrabi,et al.  Movements of the epsilon-subunit during catalysis and activation in single membrane-bound H(+)-ATP synthase. , 2005, The EMBO journal.

[29]  Stefan Steigmiller,et al.  The thermodynamic H+/ATP ratios of the H+-ATPsynthases from chloroplasts and Escherichia coli , 2008, Proceedings of the National Academy of Sciences.

[30]  Robert R. Ishmukhametov,et al.  Direct observation of stepped proteolipid ring rotation in E. coli FoF1‐ATP synthase , 2010, The EMBO journal.

[31]  Michael Börsch,et al.  Proton-powered subunit rotation in single membrane-bound F0F1-ATP synthase , 2004, Nature Structural &Molecular Biology.

[32]  Masasuke Yoshida,et al.  ATP synthase — a marvellous rotary engine of the cell , 2001, Nature Reviews Molecular Cell Biology.