Small RNAs : Classification , Biogenesis , and Function
暂无分享,去创建一个
[1] D. Marks,et al. The small RNA profile during Drosophila melanogaster development. , 2003, Developmental cell.
[2] V. Ambros,et al. An Extensive Class of Small RNAs in Caenorhabditis elegans , 2001, Science.
[3] Sam Griffiths-Jones,et al. The microRNA Registry , 2004, Nucleic Acids Res..
[4] M. Yao,et al. Nongenic, bidirectional transcription precedes and may promote developmental DNA deletion in Tetrahymena thermophila. , 2001, Genes & development.
[5] A. Fire,et al. Specific inhibition of gene expression by small double-stranded RNAs in invertebrate and vertebrate systems , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[6] Ji-Joon Song,et al. The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNAi effector complexes , 2003, Nature Structural Biology.
[7] A. Pasquinelli,et al. Genes and Mechanisms Related to RNA Interference Regulate Expression of the Small Temporal RNAs that Control C. elegans Developmental Timing , 2001, Cell.
[8] H. Vaucheret,et al. AGO1, QDE-2, and RDE-1 are related proteins required for post-transcriptional gene silencing in plants, quelling in fungi, and RNA interference in animals. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[9] T. Sugiyama,et al. RITS acts in cis to promote RNA interference–mediated transcriptional and post-transcriptional silencing , 2004, Nature Genetics.
[10] C. Napoli,et al. Introduction of a Chimeric Chalcone Synthase Gene into Petunia Results in Reversible Co-Suppression of Homologous Genes in trans. , 1990, The Plant cell.
[11] Hajime Sakai,et al. Regulation of Flowering Time and Floral Organ Identity by a MicroRNA and Its APETALA2-Like Target Genes Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.016238. , 2003, The Plant Cell Online.
[12] T. Du,et al. Asymmetry in the Assembly of the RNAi Enzyme Complex , 2003, Cell.
[13] C. Hornyik,et al. A viral protein suppresses RNA silencing and binds silencing‐generated, 21‐ to 25‐nucleotide double‐stranded RNAs , 2002, The EMBO journal.
[14] Gang Wu,et al. SGS 3 and SGS 2 / SDE 1 / RDR 6 are required for juvenile development and the production of transacting siRNAs in Arabidopsis , 2004 .
[15] R. Sunkar,et al. Novel and Stress-Regulated MicroRNAs and Other Small RNAs from Arabidopsis , 2004, The Plant Cell Online.
[16] V. Ambros. The functions of animal microRNAs , 2004, Nature.
[17] F. Slack,et al. The lin-41 RBCC gene acts in the C. elegans heterochronic pathway between the let-7 regulatory RNA and the LIN-29 transcription factor. , 2000, Molecular cell.
[18] Arndt Borkhardt,et al. High expression of precursor microRNA‐155/BIC RNA in children with Burkitt lymphoma , 2004, Genes, chromosomes & cancer.
[19] Olivier Voinnet,et al. Two classes of short interfering RNA in RNA silencing , 2002, The EMBO journal.
[20] C. Croce,et al. MicroRNA profiling reveals distinct signatures in B cell chronic lymphocytic leukemias. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[21] G. Hannon,et al. C . elegans involved in developmental timing in Dicer functions in RNA interference and in synthesis of small RNA , 2001 .
[22] M. Esteban,et al. Induction of apoptosis by the dsRNA-dependent protein kinase (PKR): Mechanism of action , 2000, Apoptosis.
[23] Michael Sattler,et al. Nucleic acid 3′-end recognition by the Argonaute2 PAZ domain , 2004, Nature Structural &Molecular Biology.
[24] B. Cullen,et al. Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs. , 2004, RNA.
[25] T. Tuschl,et al. Identification of Novel Genes Coding for Small Expressed RNAs , 2001, Science.
[26] D. Bartel. MicroRNAs Genomics, Biogenesis, Mechanism, and Function , 2004, Cell.
[27] E. Sontheimer,et al. Distinct Roles for Drosophila Dicer-1 and Dicer-2 in the siRNA/miRNA Silencing Pathways , 2004, Cell.
[28] M. Mann,et al. miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs. , 2002, Genes & development.
[29] C. Burge,et al. Conserved Seed Pairing, Often Flanked by Adenosines, Indicates that Thousands of Human Genes are MicroRNA Targets , 2005, Cell.
[30] Oliver Hobert,et al. MicroRNAs act sequentially and asymmetrically to control chemosensory laterality in the nematode , 2004, Nature.
[31] Ira M. Hall,et al. Establishment and Maintenance of a Heterochromatin Domain , 2002, Science.
[32] R. Martienssen,et al. The role of RNA interference in heterochromatic silencing , 2004, Nature.
[33] Neff Walker,et al. A MicroRNA as a Translational Repressor of APETALA2 in Arabidopsis Flower Development , 2004 .
[34] M. Gorovsky,et al. Conjugation-specific small RNAs in Tetrahymena have predicted properties of scan (scn) RNAs involved in genome rearrangement. , 2004, Genes & development.
[35] T. Tuschl,et al. The Human DiGeorge Syndrome Critical Region Gene 8 and Its D. melanogaster Homolog Are Required for miRNA Biogenesis , 2004, Current Biology.
[36] D. Zilberman,et al. RNA Silencing Genes Control de Novo DNA Methylation , 2004, Science.
[37] T. Tuschl,et al. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells , 2001, Nature.
[38] R. Plasterk,et al. mut-7 of C. elegans, Required for Transposon Silencing and RNA Interference, Is a Homolog of Werner Syndrome Helicase and RNaseD , 1999, Cell.
[39] Songtao Jia,et al. RNAi-Mediated Targeting of Heterochromatin by the RITS Complex , 2004, Science.
[40] S. Tutton,et al. Specific Double-Stranded RNA Interference in Undifferentiated Mouse Embryonic Stem Cells , 2001, Molecular and Cellular Biology.
[41] G. Hannon,et al. Crystal Structure of Argonaute and Its Implications for RISC Slicer Activity , 2004, Science.
[42] Yuichiro Watanabe,et al. Arabidopsis micro-RNA biogenesis through Dicer-like 1 protein functions. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[43] E. Meyer,et al. Non-Mendelian inheritance and homology-dependent effects in ciliates. , 2002, Advances in genetics.
[44] Shinji Yamaguchi,et al. RNAi is activated during Drosophila oocyte maturation in a manner dependent on aubergine and spindle-E. , 2002, Genes & development.
[45] K. Czaplinski,et al. Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs. , 2004, RNA.
[46] G. Hannon,et al. Unlocking the potential of the human genome with RNA interference , 2004, Nature.
[47] Xiaofeng Cao,et al. Role of Arabidopsis ARGONAUTE4 in RNA-Directed DNA Methylation Triggered by Inverted Repeats , 2004, Current Biology.
[48] V. Ambros,et al. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14 , 1993, Cell.
[49] P. Zamore,et al. A Protein Sensor for siRNA Asymmetry , 2004, Science.
[50] M. Matzke,et al. Short RNAs Can Identify New Candidate Transposable Element Families in Arabidopsis , 2002, Plant Physiology.
[51] Valerian V Dolja,et al. Viral RNA silencing suppressors inhibit the microRNA pathway at an intermediate step. , 2004, Genes & development.
[52] Franck Vazquez,et al. Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs. , 2004, Molecular cell.
[53] R. Shiekhattar,et al. The Microprocessor complex mediates the genesis of microRNAs , 2004, Nature.
[54] Philippe Mourrain,et al. Arabidopsis SGS2 and SGS3 Genes Are Required for Posttranscriptional Gene Silencing and Natural Virus Resistance , 2000, Cell.
[55] A. Pasquinelli,et al. A Cellular Function for the RNA-Interference Enzyme Dicer in the Maturation of the let-7 Small Temporal RNA , 2001, Science.
[56] G. Ruvkun,et al. A uniform system for microRNA annotation. , 2003, RNA.
[57] M. Gorovsky,et al. Small RNAs in genome rearrangement in Tetrahymena. , 2004, Current opinion in genetics & development.
[58] R. Allshire,et al. Hairpin RNAs and Retrotransposon LTRs Effect RNAi and Chromatin-Based Gene Silencing , 2003, Science.
[59] Andrew Fire,et al. The rde-1 Gene, RNA Interference, and Transposon Silencing in C. elegans , 1999, Cell.
[60] K. Morris,et al. Small Interfering RNA-Induced Transcriptional Gene Silencing in Human Cells , 2004, Science.
[61] V. Kim,et al. The Drosha-DGCR8 complex in primary microRNA processing. , 2004, Genes & development.
[62] Sean D. Taverna,et al. Methylation of Histone H3 at Lysine 9 Targets Programmed DNA Elimination in Tetrahymena , 2002, Cell.
[63] M. A. Rector,et al. Endogenous and Silencing-Associated Small RNAs in Plants Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.003210. , 2002, The Plant Cell Online.
[64] J. Mol,et al. Flavonoid genes in petunia: addition of a limited number of gene copies may lead to a suppression of gene expression. , 1990, The Plant cell.
[65] Eric J Wagner,et al. Both natural and designed micro RNAs can inhibit the expression of cognate mRNAs when expressed in human cells. , 2002, Molecular cell.
[66] Adam M. Gustafson,et al. Genetic and Functional Diversification of Small RNA Pathways in Plants , 2004, PLoS biology.
[67] Marjori Matzke,et al. Evidence for Nuclear Processing of Plant Micro RNA and Short Interfering RNA Precursors1[w] , 2003, Plant Physiology.
[68] A. Aravin,et al. Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in the D. melanogaster germline , 2001, Current Biology.
[69] James A. Birchler,et al. Heterochromatic Silencing and HP1 Localization in Drosophila Are Dependent on the RNAi Machinery , 2004, Science.
[70] G. Hannon,et al. Processing of primary microRNAs by the Microprocessor complex , 2004, Nature.
[71] W. S. Hayward,et al. Avian bic, a Gene Isolated from a Common Retroviral Site in Avian Leukosis Virus-Induced Lymphomas That Encodes a Noncoding RNA, Cooperates with c-myc in Lymphomagenesis and Erythroleukemogenesis , 2002, Journal of Virology.
[72] D. Patel,et al. Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain , 2004, Nature.
[73] L. Lim,et al. An Abundant Class of Tiny RNAs with Probable Regulatory Roles in Caenorhabditis elegans , 2001, Science.
[74] M. Siomi,et al. A Drosophila fragile X protein interacts with components of RNAi and ribosomal proteins. , 2002, Genes & development.
[75] J. M. Thomson,et al. Argonaute2 Is the Catalytic Engine of Mammalian RNAi , 2004, Science.
[76] T. Tuschl,et al. Mechanisms of gene silencing by double-stranded RNA , 2004, Nature.
[77] B. Cullen,et al. Exportin-5 mediates the nuclear export of pre-microRNAs and short hairpin RNAs. , 2003, Genes & development.
[78] T. Berardini,et al. HASTY, the Arabidopsis ortholog of exportin 5/MSN5, regulates phase change and morphogenesis , 2003, Development.
[79] J. Messing,et al. CARPEL FACTORY, a Dicer Homolog, and HEN1, a Novel Protein, Act in microRNA Metabolism in Arabidopsis thaliana , 2002, Current Biology.
[80] H. Vaucheret,et al. The Nuclear dsRNA Binding Protein HYL1 Is Required for MicroRNA Accumulation and Plant Development, but Not Posttranscriptional Transgene Silencing , 2004, Current Biology.
[81] Kim Vn,et al. Small RNAs: classification, biogenesis, and function. , 2005, Molecules and cells.
[82] Henning Urlaub,et al. Single-Stranded Antisense siRNAs Guide Target RNA Cleavage in RNAi , 2002, Cell.
[83] O. Voinnet,et al. RNA silencing: no mercy for viruses? , 2004, Immunological reviews.
[84] Anastasia Khvorova,et al. Functional siRNAs and miRNAs Exhibit Strand Bias , 2003, Cell.
[85] H. Vaucheret,et al. Arabidopsis HEN1 A Genetic Link between Endogenous miRNA Controlling Development and siRNA Controlling Transgene Silencing and Virus Resistance , 2003, Current Biology.
[86] T. Tuschl,et al. Analysis of gene function in somatic mammalian cells using small interfering RNAs. , 2002, Methods.
[87] G. Hannon,et al. miRNAs on the move: miRNA biogenesis and the RNAi machinery. , 2004, Current opinion in cell biology.
[88] A. Caudy,et al. Role for a bidentate ribonuclease in the initiation step of RNA interference , 2001 .
[89] C. Croce,et al. Frequent deletions and down-regulation of micro- RNA genes miR15 and miR16 at 13q14 in chronic lymphocytic leukemia , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[90] Ira M. Hall,et al. Regulation of Heterochromatic Silencing and Histone H3 Lysine-9 Methylation by RNAi , 2002, Science.
[91] V. Kim,et al. The nuclear RNase III Drosha initiates microRNA processing , 2003, Nature.
[92] D. Baulcombe. RNA silencing in plants , 2004, Nature.
[93] D. Bartel,et al. MicroRNAs Modulate Hematopoietic Lineage Differentiation , 2004, Science.
[94] C. Llave,et al. Cleavage of Scarecrow-like mRNA Targets Directed by a Class of Arabidopsis miRNA , 2002, Science.
[95] R. Plasterk,et al. What's new about RNAi? Meeting on siRNAs and miRNAs. , 2004, EMBO reports.
[96] T. Fujisawa,et al. Analysis of a piwi-Related Gene Implicates Small RNAs in Genome Rearrangement in Tetrahymena , 2002, Cell.
[97] Yifan Liu,et al. Histone H3 lysine 9 methylation is required for DNA elimination in developing macronuclei in Tetrahymena. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[98] Xiaodong Wang,et al. R2D2, a Bridge Between the Initiation and Effector Steps of the Drosophila RNAi Pathway , 2003, Science.
[99] V. Ambros,et al. The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation. , 1999, Developmental biology.
[100] Xiaofeng Cao,et al. ARGONAUTE4 Control of Locus-Specific siRNA Accumulation and DNA and Histone Methylation , 2003, Science.
[101] G. Szittya,et al. Molecular mechanism of RNA silencing suppression mediated by p19 protein of tombusviruses , 2004, The EMBO journal.
[102] R. Plasterk,et al. RNAi protects the Caenorhabditis elegans germline against transposition. , 2004, Trends in genetics : TIG.
[103] Giacomo Cavalli,et al. Dissection of a Natural RNA Silencing Process in the Drosophila melanogaster Germ Line , 2004, Molecular and Cellular Biology.
[104] T. Du,et al. RISC Assembly Defects in the Drosophila RNAi Mutant armitage , 2004, Cell.
[105] B. Reinhart,et al. MicroRNAs in plants. , 2002, Genes & development.
[106] Madhur Kumar,et al. Antisense RNA: Function and Fate of Duplex RNA in Cells of Higher Eukaryotes , 1998, Microbiology and Molecular Biology Reviews.
[107] D. Baulcombe,et al. RNA Polymerase IV Directs Silencing of Endogenous DNA , 2005, Science.
[108] S. Moon,et al. Human embryonic stem cells express a unique set of microRNAs. , 2004, Developmental biology.
[109] N. Fedoroff,et al. The Arabidopsis double-stranded RNA-binding protein HYL1 plays a role in microRNA-mediated gene regulation. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[110] Xuemei Chen,et al. Methylation as a Crucial Step in Plant microRNA Biogenesis , 2005, Science.
[111] T. Tuschl,et al. Functional anatomy of siRNAs for mediating efficient RNAi in Drosophila melanogaster embryo lysate , 2001, The EMBO journal.
[112] Magdalena Zernicka-Goetz,et al. Specific interference with gene function by double-stranded RNA in early mouse development , 2000, Nature Cell Biology.
[113] A. Fire,et al. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans , 1998, Nature.
[114] U. Kutay,et al. Nuclear Export of MicroRNA Precursors , 2004, Science.
[115] Kazunari Taira,et al. A Small Modulatory dsRNA Specifies the Fate of Adult Neural Stem Cells , 2004, Cell.
[116] G. Szittya,et al. Size Selective Recognition of siRNA by an RNA Silencing Suppressor , 2003, Cell.
[117] B. Reinhart,et al. Small RNAs Correspond to Centromere Heterochromatic Repeats , 2002, Science.
[118] A. Djikeng,et al. RNA interference in Trypanosoma brucei: cloning of small interfering RNAs provides evidence for retroposon-derived 24-26-nucleotide RNAs. , 2001, RNA.
[119] J. Birchler,et al. RNAi related mechanisms affect both transcriptional and posttranscriptional transgene silencing in Drosophila. , 2002, Molecular cell.
[120] K. Gull,et al. Double-stranded RNA induces mRNA degradation in Trypanosoma brucei. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[121] B. Bass,et al. A Role for the RNase III Enzyme DCR-1 in RNA Interference and Germ Line Development in Caenorhabditis elegans , 2001, Science.
[122] 岡村 勝友. Distinct roles for Argonaute proteins in small RNA-directed RNA cleavage pathways , 2004 .
[123] V. Kim,et al. MicroRNA maturation: stepwise processing and subcellular localization , 2002, The EMBO journal.
[124] W. Tam. Identification and characterization of human BIC, a gene on chromosome 21 that encodes a noncoding RNA. , 2001, Gene.
[125] B. Reinhart,et al. The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans , 2000, Nature.
[126] T. Tuschl,et al. Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs. , 2004, Molecular cell.
[127] V. Ambros,et al. MicroRNAs and Other Tiny Endogenous RNAs in C. elegans , 2003, Current Biology.
[128] Anton J. Enright,et al. Identification of Virus-Encoded MicroRNAs , 2004, Science.
[129] D. Baulcombe,et al. Crystal structure of p19--a universal suppressor of RNA silencing. , 2004, Trends in biochemical sciences.
[130] P. Sharp,et al. Embryonic stem cell-specific MicroRNAs. , 2003, Developmental cell.
[131] R. Carthew,et al. Use of dsRNA-Mediated Genetic Interference to Demonstrate that frizzled and frizzled 2 Act in the Wingless Pathway , 1998, Cell.
[132] L. Malinina,et al. Recognition of small interfering RNA by a viral suppressor of RNA silencing , 2003, Nature.
[133] V. Ambros,et al. The Cold Shock Domain Protein LIN-28 Controls Developmental Timing in C. elegans and Is Regulated by the lin-4 RNA , 1997, Cell.
[134] G. Ruvkun,et al. Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans , 1993, Cell.
[135] D. Bartel,et al. MicroRNA-Directed Cleavage of HOXB8 mRNA , 2004, Science.
[136] D. Bartel,et al. Micromanagers of gene expression: the potentially widespread influence of metazoan microRNAs , 2004, Nature Reviews Genetics.
[137] R. Poethig,et al. HASTY: a gene that regulates the timing of shoot maturation in Arabidopsis thaliana. , 1998, Development.
[138] Sanghyuk Lee,et al. MicroRNA genes are transcribed by RNA polymerase II , 2004, The EMBO journal.
[139] Michael Black,et al. Role of transposable elements in heterochromatin and epigenetic control , 2004, Nature.
[140] R. Russell,et al. bantam Encodes a Developmentally Regulated microRNA that Controls Cell Proliferation and Regulates the Proapoptotic Gene hid in Drosophila , 2003, Cell.
[141] James A. Birchler,et al. RNAi-mediated pathways in the nucleus , 2005, Nature Reviews Genetics.
[142] A. Caudy,et al. Fragile X-related protein and VIG associate with the RNA interference machinery. , 2002, Genes & development.