Genome-wide detection of sRNA targets with rNAV
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Romain Bourqui | Patricia Thébault | Isabelle Dutour | Jonathan Dubois | Amine Ghozlane | P. Thébault | A. Ghozlane | I. Dutour | Romain Bourqui | Jonathan Dubois
[1] J. Vogel,et al. Target identification of small noncoding RNAs in bacteria. , 2007, Current opinion in microbiology.
[2] G. Storz,et al. Interesting twists on small RNA themes in Pseudomonas aeruginosa , 2011, Molecular microbiology.
[3] Artem Lysenko,et al. Graph-based sequence annotation using a data integration approach , 2008, J. Integr. Bioinform..
[4] Chase L. Beisel,et al. Base pairing small RNAs and their roles in global regulatory networks. , 2010, FEMS microbiology reviews.
[5] Leonard M. Freeman,et al. A set of measures of centrality based upon betweenness , 1977 .
[6] F. Repoila,et al. Small noncoding RNAs controlling pathogenesis. , 2007, Current opinion in microbiology.
[7] G. Storz,et al. Regulatory RNAs in Bacteria , 2009, Cell.
[8] Jean-Daniel Fekete,et al. Author Manuscript, Published in "sigchi Conference on Human Factors in Computing Systems Topology-aware Navigation in Large Networks , 2022 .
[9] M. Springer,et al. Post-Transcriptional Control of the Escherichia coli PhoQ-PhoP Two-Component System by Multiple sRNAs Involves a Novel Pairing Region of GcvB , 2013, PLoS genetics.
[10] S. Gottesman,et al. Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA , 2010, The EMBO journal.
[11] Ulrik Brandes,et al. Analysis and Visualization of Social Networks , 2003, Graph Drawing Software.
[12] J. Shapiro,et al. Revisiting the Central Dogma in the 21st Century , 2009, Annals of the New York Academy of Sciences.
[13] Igor Jurisica,et al. Interaction Techniques for Selecting and Manipulating Subgraphs in Network Visualizations , 2009, IEEE Transactions on Visualization and Computer Graphics.
[14] Igor Jurisica,et al. NAViGaTOR: Network Analysis, Visualization and Graphing Toronto , 2009, Bioinform..
[15] S. Dongen. Graph clustering by flow simulation , 2000 .
[16] David Auber,et al. Tulip - A Huge Graph Visualization Framework , 2004, Graph Drawing Software.
[17] P. Romby,et al. An overview of RNAs with regulatory functions in gram-positive bacteria , 2009, Cellular and Molecular Life Sciences.
[18] L. T. Stauffer,et al. Role of the sRNA GcvB in regulation of cycA in Escherichia coli. , 2009, Microbiology.
[19] Jarke J. van Wijk,et al. Smooth and efficient zooming and panning , 2003, IEEE Symposium on Information Visualization 2003 (IEEE Cat. No.03TH8714).
[20] Rolf Backofen,et al. IntaRNA: efficient prediction of bacterial sRNA targets incorporating target site accessibility and seed regions , 2008, Bioinform..
[21] Kristin Reiche,et al. The primary transcriptome of the major human pathogen Helicobacter pylori , 2010, Nature.
[22] Diogo M. Camacho,et al. Functional characterization of bacterial sRNAs using a network biology approach , 2011, Proceedings of the National Academy of Sciences.
[23] Michael Jünger,et al. Drawing Large Graphs with a Potential-Field-Based Multilevel Algorithm , 2004, GD.
[24] J. Vogel,et al. Pervasive post‐transcriptional control of genes involved in amino acid metabolism by the Hfq‐dependent GcvB small RNA , 2011, Molecular microbiology.
[25] G. Storz,et al. Regulation by small RNAs in bacteria: expanding frontiers. , 2011, Molecular cell.
[26] David James Sherman,et al. ProViz: protein interaction visualization and exploration , 2005, Bioinform..
[27] P. Jaccard. Distribution de la flore alpine dans le bassin des Dranses et dans quelques régions voisines , 1901 .
[28] J. Vogel,et al. Multiple target regulation by small noncoding RNAs rewires gene expression at the post-transcriptional level. , 2009, Research in microbiology.
[29] H. Margalit,et al. Accessibility and Evolutionary Conservation Mark Bacterial Small-RNA Target-Binding Regions , 2011, Journal of bacteriology.
[30] Christopher J. Rawlings,et al. Data integration for plant genomics - exemplars from the integration of Arabidopsis thaliana databases , 2009, Briefings Bioinform..
[31] Mario Cannataro,et al. Visual Data Mining of Biological Networks: One Size Does Not Fit All , 2013, PLoS Comput. Biol..
[32] Edward M. Reingold,et al. Graph drawing by force‐directed placement , 1991, Softw. Pract. Exp..
[33] Reinhard Schneider,et al. Arena3D: visualizing time-driven phenotypic differences in biological systems , 2012, BMC Bioinformatics.
[34] Pascale Romby,et al. Exploring the complex world of RNA regulation , 2008, Biology of the cell.
[35] Ravi Iyengar,et al. AVIS: AJAX viewer of interactive signaling networks , 2007, Bioinform..
[36] Dorothea Wagner,et al. Analysis and Visualization of Social Networks , 2003, Graph Drawing Software.
[37] Andreas Tauch,et al. CoryneRegNet 3.0--an interactive systems biology platform for the analysis of gene regulatory networks in corynebacteria and Escherichia coli. , 2007, Journal of biotechnology.
[38] David Bryant,et al. DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists , 2007, Nucleic Acids Res..
[39] A. Danchin,et al. Small noncoding RNA GcvB is a novel regulator of acid resistance in Escherichia coli , 2009, BMC Genomics.
[40] Brad T. Sherman,et al. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists , 2008, Nucleic acids research.
[41] Mark A. Ragan,et al. Evolutionary Dynamics of Small RNAs in 27 Escherichia coli and Shigella Genomes , 2012, Genome biology and evolution.
[42] J. Vogel,et al. A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. , 2007, Genes & development.
[43] Jarke J. van Wijk,et al. Supporting Exploration Awareness in Information Visualization , 2009, IEEE Computer Graphics and Applications.
[44] Susumu Goto,et al. KEGG for integration and interpretation of large-scale molecular data sets , 2011, Nucleic Acids Res..
[45] G. Storz,et al. Bacterial small RNA regulators: versatile roles and rapidly evolving variations. , 2011, Cold Spring Harbor perspectives in biology.
[46] M. Vergassola,et al. The Listeria transcriptional landscape from saprophytism to virulence , 2009, Nature.
[47] Zhenjun Hu,et al. Visant: an Integrative Framework for Networks in Systems Biology , 2008 .
[48] Brad T. Sherman,et al. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources , 2008, Nature Protocols.
[49] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.