Genetic and Biochemical Analysis of the Twin-Arginine Translocation Pathway in Halophilic Archaea

ABSTRACT The twin-arginine translocation (Tat) pathway is present in a wide variety of prokaryotes and is capable of exporting partially or fully folded proteins from the cytoplasm. Although diverse classes of proteins are transported via the Tat pathway, in most organisms it facilitates the secretion of a relatively small number of substrates compared to the Sec pathway. However, computational evidence suggests that haloarchaea route nearly all secreted proteins to the Tat pathway. We have expanded previous computational analyses of the haloarchaeal Tat pathway and initiated in vivo characterization of the Tat machinery in a model haloarchaeon, Haloferax volcanii. Consistent with the predicted usage of the this pathway in the haloarchaea, we determined that three of the four identified tat genes in Haloferax volcanii are essential for viability when grown aerobically in complex medium. This represents the first report of an organism that requires the Tat pathway for viability when grown under such conditions. Deletion of the nonessential gene had no effect on the secretion of a verified substrate of the Tat pathway. The two TatA paralogs TatAo and TatAt were detected in both the membrane and cytoplasm and could be copurified from the latter fraction. Using size exclusion chromatography to further characterize cytoplasmic and membrane TatA proteins, we find these proteins present in high-molecular-weight complexes in both cellular fractions.

[1]  M. Saier,et al.  Sequence and phylogenetic analyses of the twin-arginine targeting (Tat) protein export system , 2002, Archives of Microbiology.

[2]  D. Oesterhelt,et al.  The fdx gene encoding the [2Fe-2S] ferredoxin of Halobacterium salinarium (H. halobium) , 1993, Molecular and General Genetics MGG.

[3]  J. Thompson,et al.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.

[4]  H. Saibil,et al.  Purified components of the Escherichia coli Tat protein transport system form a double-layered ring structure. , 2001, European journal of biochemistry.

[5]  George Georgiou,et al.  Folding quality control in the export of proteins by the bacterial twin-arginine translocation pathway , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[6]  R. Amann,et al.  Salinibacter ruber gen. nov., sp. nov., a novel, extremely halophilic member of the Bacteria from saltern crystallizer ponds. , 2002, International journal of systematic and evolutionary microbiology.

[7]  M. Dyall-Smith,et al.  Improved shuttle vectors for Haloferax volcanii including a dual-resistance plasmid. , 1994, Gene.

[8]  E. Hartmann,et al.  Prokaryotic Utilization of the Twin-Arginine Translocation Pathway: a Genomic Survey , 2003, Journal of bacteriology.

[9]  L. Blyn,et al.  Regulation of pap pilin phase variation by a mechanism involving differential dam methylation states. , 1990, The EMBO journal.

[10]  S. Brunak,et al.  SHORT COMMUNICATION Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites , 1997 .

[11]  V. Thorsson,et al.  Genome sequence of Halobacterium species NRC-1. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[12]  Z. Ding,et al.  Agrobacterium tumefaciens Twin-Arginine-Dependent Translocation Is Important for Virulence, Flagellation, and Chemotaxis but Not Type IV Secretion , 2003, Journal of bacteriology.

[13]  B. Berks,et al.  Sec-independent Protein Translocation in Escherichia coli , 1999, The Journal of Biological Chemistry.

[14]  Sierd Bron,et al.  Two minimal Tat translocases in Bacillus , 2004, Molecular microbiology.

[15]  B. Berks,et al.  Overlapping functions of components of a bacterial Sec‐independent protein export pathway , 1998, The EMBO journal.

[16]  N. Hand,et al.  Translocation of proteins across archaeal cytoplasmic membranes. , 2004, FEMS microbiology reviews.

[17]  J. Weiner,et al.  A Novel and Ubiquitous System for Membrane Targeting and Secretion of Cofactor-Containing Proteins , 1998, Cell.

[18]  A. Bolhuis Protein transport in the halophilic archaeon Halobacterium sp. NRC-1: a major role for the twin-arginine translocation pathway? , 2002, Microbiology.

[19]  B. Berks A common export pathway for proteins binding complex redox cofactors? , 1996, Molecular microbiology.

[20]  Erik L. L. Sonnhammer,et al.  A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences , 1998, ISMB.

[21]  G. Sprenger,et al.  Isolation and Characterization of Bifunctional Escherichia coli TatA Mutant Proteins That Allow Efficient Tat-dependent Protein Translocation in the Absence of TatB* , 2005, Journal of Biological Chemistry.

[22]  R. G. Lloyd,et al.  Development of Additional Selectable Markers for the Halophilic Archaeon Haloferax volcanii Based on the leuB and trpA Genes , 2004, Applied and Environmental Microbiology.

[23]  M. Vasil,et al.  Effects of the twin-arginine translocase on secretion of virulence factors, stress response, and pathogenesis , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[24]  Min Pan,et al.  Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea. , 2004, Genome research.

[25]  Jessica C Kissinger,et al.  Adaptation of protein secretion to extremely high‐salt conditions by extensive use of the twin‐arginine translocation pathway , 2002, Molecular microbiology.

[26]  Matthias Müller,et al.  Differential interactions between a twin-arginine signal peptide and its translocase in Escherichia coli. , 2003, Molecular cell.

[27]  R. Wetzker,et al.  Sequence-specific Binding of prePhoD to Soluble TatAd Indicates Protein-mediated Targeting of the Tat Export in Bacillus subtilis* , 2003, Journal of Biological Chemistry.

[28]  R. Ortenberg,et al.  Development of a Gene Knockout System for the Halophilic Archaeon Haloferax volcanii by Use of the pyrE Gene , 2003, Journal of bacteriology.

[29]  V. Lorenzo,et al.  Getting out: protein traffic in prokaryotes , 2004, Molecular microbiology.

[30]  G. Fichant,et al.  Bacterial twin-arginine signal peptide-dependent protein translocation pathway: evolution and mechanism. , 2000, Journal of molecular microbiology and biotechnology.