Competition between Sec‐ and TAT‐dependent protein translocation in Escherichia coli

Recently, a new protein translocation pathway, the twin‐arginine translocation (TAT) pathway, has been identified in both bacteria and chloroplasts. To study the possible competition between the TAT‐ and the well‐characterized Sec translocon‐dependent pathways in Escherichia coli, we have fused the TorA TAT‐targeting signal peptide to the Sec‐dependent inner membrane protein leader peptidase (Lep). We find that the soluble, periplasmic P2 domain from Lep is re‐routed by the TorA signal peptide into the TAT pathway. In contrast, the full‐length TorA–Lep fusion protein is not re‐routed into the TAT pathway, suggesting that Sec‐targeting signals in Lep can override TAT‐targeting information in the TorA signal peptide. We also show that the TorA signal peptide can be converted into a Sec‐targeting signal peptide by increasing the hydrophobicity of its h‐region. Thus, beyond the twin‐arginine motif, the overall hydrophobicity of the signal peptide plays an important role in TAT versus Sec targeting. This is consistent with statistical data showing that TAT‐targeting signal peptides in general have less hydrophobic h‐regions than Sec‐targeting signal peptides.

[1]  E. Bibi The role of the ribosome-translocon complex in translation and assembly of polytopic membrane proteins. , 1998, Trends in biochemical sciences.

[2]  M. Chou,et al.  Titration of protein transport activity by incremental changes in signal peptide hydrophobicity. , 1993, Biochemistry.

[3]  A. Driessen,et al.  Bacterial protein translocation: kinetic and thermodynamic role of ATP and the protonmotive force. , 1992, Trends in biochemical sciences.

[4]  K. M. Dolan,et al.  Azide-resistant mutants of Escherichia coli alter the SecA protein, an azide-sensitive component of the protein export machinery. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[5]  G. von Heijne,et al.  The E. coli SRP: preferences of a targeting factor , 1997, FEBS letters.

[6]  S. Brink,et al.  Pathway specificity for a ΔpH‐dependent precursor thylakoid lumen protein is governed by a 'sec‐avoidance’ motif in the transfer peptide and a 'sec‐incompatible’ mature protein , 1997, The EMBO journal.

[7]  R. Herrmann,et al.  A new type of signal peptide: central role of a twin‐arginine motif in transfer signals for the delta pH‐dependent thylakoidal protein translocase. , 1995, The EMBO journal.

[8]  S. Brink,et al.  Targeting of thylakoid proteins by the ΔpH‐driven twin‐arginine translocation pathway requires a specific signal in the hydrophobic domain in conjunction with the twin‐arginine motif , 1998, FEBS letters.

[9]  B. Berks,et al.  Overlapping functions of components of a bacterial Sec‐independent protein export pathway , 1998, The EMBO journal.

[10]  B. Berks A common export pathway for proteins binding complex redox cofactors? , 1996, Molecular microbiology.

[11]  J. Weiner,et al.  A Novel and Ubiquitous System for Membrane Targeting and Secretion of Cofactor-Containing Proteins , 1998, Cell.

[12]  B. Berks,et al.  Targeting signals for a bacterial Sec‐independent export system direct plant thylakoid import by the ΔpH pathway , 1998, FEBS letters.

[13]  Rolf Apweiler,et al.  The SWISS-PROT protein sequence data bank and its supplement TrEMBL , 1997, Nucleic Acids Res..

[14]  G. von Heijne,et al.  Assembly of a cytoplasmic membrane protein in Escherichia coli is dependent on the signal recognition particle , 1996, FEBS letters.

[15]  G von Heijne,et al.  Differential use of the signal recognition particle translocase targeting pathway for inner membrane protein assembly in Escherichia coli. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[16]  D. Belin,et al.  Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter , 1995, Journal of bacteriology.

[17]  G. Giordano,et al.  TMAO anaerobic respiration in Escherichia coli: involvement of the tor operon , 1994, Molecular microbiology.

[18]  B. Berks,et al.  An Essential Component of a Novel Bacterial Protein Export System with Homologues in Plastids and Mitochondria* , 1998, The Journal of Biological Chemistry.

[19]  M. Casadaban,et al.  Transposition and fusion of the lac genes to selected promoters in Escherichia coli using bacteriophage lambda and Mu. , 1976, Journal of molecular biology.

[20]  Gunnar von Heijne,et al.  Fine-tuning the topology of a polytopic membrane protein: Role of positively and negatively charged amino acids , 1990, Cell.

[21]  S. Brunak,et al.  Defining a similarity threshold for a functional protein sequence pattern: The signal peptide cleavage site , 1996, Proteins.

[22]  W. Wickner,et al.  Effects of two sec genes on protein assembly into the plasma membrane of Escherichia coli. , 1985, The Journal of biological chemistry.

[23]  R. Dalbey,et al.  Protein translocation into and across the bacterial plasma membrane and the plant thylakoid membrane. , 1999, Trends in biochemical sciences.

[24]  U. K. Laemmli,et al.  Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4 , 1970, Nature.

[25]  G. Giordano,et al.  A novel Sec‐independent periplasmic protein translocation pathway in Escherichia coli , 1998, The EMBO journal.

[26]  C. Murphy,et al.  Insertion of the Polytopic Membrane Protein MalF Is Dependent on the Bacterial Secretion Machinery (*) , 1996, The Journal of Biological Chemistry.

[27]  W. Wickner,et al.  Sequence of the leader peptidase gene of Escherichia coli and the orientation of leader peptidase in the bacterial envelope. , 1983, The Journal of biological chemistry.

[28]  T. D. Schneider,et al.  Sequence logos: a new way to display consensus sequences. , 1990, Nucleic acids research.

[29]  P. Tai,et al.  SecE-depleted Membranes of Escherichia coli Are Active , 1997, The Journal of Biological Chemistry.

[30]  K. Cline,et al.  A Signal Peptide That Directs Non-Sec Transport in Bacteria Also Directs Efficient and Exclusive Transport on the Thylakoid Delta pH Pathway* , 1998, The Journal of Biological Chemistry.

[31]  D. Bush,et al.  Sec-independent protein translocation by the maize Hcf106 protein. , 1997, Science.

[32]  R. Martienssen,et al.  Old and new pathways of protein export in chloroplasts and bacteria. , 1998, Trends in cell biology.

[33]  C. Santini,et al.  Potential receptor function of three homologous components, TatA, TatB and TatE, of the twin‐arginine signal sequence‐dependent metalloenzyme translocation pathway in Escherichia coli , 1998, Molecular microbiology.

[34]  G. Vonheijne,et al.  Control of topology and mode of assembly of a polytopic membrane protein by positively charged residues , 1989, Nature.

[35]  H. Bernstein,et al.  Membrane protein biogenesis: the exception explains the rules. , 1998, Proceedings of the National Academy of Sciences of the United States of America.