Structure and expression of two nuclear receptor genes in marsupials: insights into the evolution of the antisense overlap between the α-thyroid hormone receptor and Rev-erbα
暂无分享,去创建一个
[1] S. H. Munroe,et al. An exonic splicing enhancer within a bidirectional coding sequence regulates alternative splicing of an antisense mRNA , 2010, RNA biology.
[2] S. Williams-Blangero,et al. The Laboratory Opossum , 2010 .
[3] M. Lazar,et al. Nuclear receptor Rev-erbα: a heme receptor that coordinates circadian rhythm and metabolism , 2010, Nuclear Receptor Signaling.
[4] B. Spiegelman,et al. PGC-1α negatively regulates hepatic FGF21 expression by modulating the heme/Rev-Erbα axis , 2009, Proceedings of the National Academy of Sciences.
[5] A. Jacquier. The complex eukaryotic transcriptome: unexpected pervasive transcription and novel small RNAs , 2009, Nature Reviews Genetics.
[6] M. Lazar,et al. Negative feedback maintenance of heme homeostasis by its receptor, Rev-erbalpha. , 2009, Genes & development.
[7] Ueli Schibler,et al. REV-ERBα Participates in Circadian SREBP Signaling and Bile Acid Homeostasis , 2009, PLoS biology.
[8] M. Farnebo. Wrap53, a novel regulator of p53 , 2009, Cell cycle.
[9] M. Gelfand,et al. Rodent-specific alternative exons are more frequent in rapidly evolving genes and in paralogs , 2009, BMC Evolutionary Biology.
[10] Charles E. Vejnar,et al. Integration of microRNA miR-122 in hepatic circadian gene expression. , 2009, Genes & development.
[11] Melissa J. Moore,et al. Pre-mRNA Processing Reaches Back toTranscription and Ahead to Translation , 2009, Cell.
[12] H. Krause,et al. The Structural Basis of Gas-Responsive Transcription by the Human Nuclear Hormone Receptor REV-ERBβ , 2009, PLoS biology.
[13] D. Bartel. MicroRNAs: Target Recognition and Regulatory Functions , 2009, Cell.
[14] K. Kinzler,et al. The Antisense Transcriptomes of Human Cells , 2008, Science.
[15] D. Tollervey,et al. A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster. , 2008, Molecular cell.
[16] Gabriel V. Markov,et al. The amphioxus genome enlightens the evolution of the thyroid hormone signaling pathway , 2008, Development Genes and Evolution.
[17] M. Bucan,et al. Nuclear Receptor Corepressor-Histone Deacetylase 3 Governs Circadian Metabolic Physiology , 2008, Nature.
[18] P. Samollow. The opossum genome: insights and opportunities from an alternative mammal. , 2008, Genome research.
[19] T. Burris. Nuclear hormone receptors for heme: REV-ERBalpha and REV-ERBbeta are ligand-regulated components of the mammalian clock. , 2008, Molecular endocrinology.
[20] J. Cravedi,et al. Amphioxus Postembryonic Development Reveals the Homology of Chordate Metamorphosis , 2008, Current Biology.
[21] T. Burris,et al. Relationship between circadian oscillations of Rev-erbalpha expression and intracellular levels of its ligand, heme. , 2008, Biochemical and biophysical research communications.
[22] M. Lazar,et al. Bifunctional Role of Rev-erbα in Adipocyte Differentiation , 2008, Molecular and Cellular Biology.
[23] Mark Gerstein,et al. Systematic analysis of transcribed loci in ENCODE regions using RACE sequencing reveals extensive transcription in the human genome , 2008, Genome Biology.
[24] R. A. Reid,et al. Rev-erbα, a Heme Sensor That Coordinates Metabolic and Circadian Pathways , 2007, Science.
[25] S. Khorasanizadeh,et al. Identification of heme as the ligand for the orphan nuclear receptors REV-ERBα and REV-ERBβ , 2007, Nature Structural &Molecular Biology.
[26] Chiao-Feng Lin,et al. Birth and death of gene overlaps in vertebrates , 2007, BMC Evolutionary Biology.
[27] P. LoVerde,et al. Thyroid hormone receptor orthologues from invertebrate species with emphasis on Schistosoma mansoni , 2007, BMC Evolutionary Biology.
[28] P. Stadler,et al. RNA Maps Reveal New RNA Classes and a Possible Function for Pervasive Transcription , 2007, Science.
[29] T. Gingeras,et al. Genome-wide transcription and the implications for genomic organization , 2007, Nature Reviews Genetics.
[30] Bronwen L. Aken,et al. Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences , 2007, Nature.
[31] D. Tibboel,et al. Expression of thyroid hormone receptors A and B in developing rat tissues; evidence for extensive posttranscriptional regulation. , 2007, Journal of molecular endocrinology.
[32] L. Chasin,et al. Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons , 2006, Proceedings of the National Academy of Sciences.
[33] R. Evans,et al. Anatomical Profiling of Nuclear Receptor Expression Reveals a Hierarchical Transcriptional Network , 2006, Cell.
[34] Weimin He,et al. Nuclear Receptor Expression Links the Circadian Clock to Metabolism , 2006, Cell.
[35] R. Sachidanandam,et al. Comprehensive splice-site analysis using comparative genomics , 2006, Nucleic acids research.
[36] J. Zhu,et al. Overlapping transcripts, double-stranded RNA and antisense regulation: A genomic perspective , 2006, Cellular and Molecular Life Sciences CMLS.
[37] Christopher J. Lee,et al. Alternative splicing and RNA selection pressure — evolutionary consequences for eukaryotic genomes , 2006, Nature Reviews Genetics.
[38] Bin Xu,et al. Regulation of thyroid hormone receptor α2 RNA binding and subcellular localization by phosphorylation , 2005, Molecular and Cellular Endocrinology.
[39] S. Batalov,et al. Antisense Transcription in the Mammalian Transcriptome , 2005, Science.
[40] S. Salzberg,et al. The Transcriptional Landscape of the Mammalian Genome , 2005, Science.
[41] Juan F Medrano,et al. Real-time PCR for mRNA quantitation. , 2005, BioTechniques.
[42] Yi Xing,et al. Evidence of functional selection pressure for alternative splicingevents that accelerate evolution of protein subsequences , 2005, Genome Biology.
[43] Izabela Makalowska,et al. Overlapping genes in vertebrate genomes , 2005, Comput. Biol. Chem..
[44] V. Laudet,et al. Evolutionary genomics of nuclear receptors: from twenty-five ancestral genes to derived endocrine systems. , 2004, Molecular biology and evolution.
[45] Bin Xu,et al. An RNA-binding Domain in the Thyroid Hormone Receptor Enhances Transcriptional Activation* , 2004, Journal of Biological Chemistry.
[46] Ben Lehner,et al. In search of antisense. , 2004, Trends in biochemical sciences.
[47] Christopher J. Lee,et al. Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss , 2003, Nature Genetics.
[48] J. Samarut,et al. Thyroid hormone receptors: lessons from knockout and knock-in mutant mice , 2003, Trends in Endocrinology & Metabolism.
[49] Ueli Schibler,et al. The Orphan Nuclear Receptor REV-ERBα Controls Circadian Transcription within the Positive Limb of the Mammalian Circadian Oscillator , 2002, Cell.
[50] C. Wilson,et al. A purine-rich intronic element enhances alternative splicing of thyroid hormone receptor mRNA. , 2001, RNA.
[51] M. Lazar,et al. Post-transcriptional Regulation of Thyroid Hormone Receptor Expression by cis-Acting Sequences and a Naturally Occurring Antisense RNA* , 2000, The Journal of Biological Chemistry.
[52] P. Kopp,et al. The Thyroid Hormone Receptor Variant α2 Is a Weak Antagonist because It Is Deficient in Interactions with Nuclear Receptor Corepressors. , 1998, Endocrinology.
[53] C. Milcarek,et al. Expression of the thyroid hormone receptor gene, erbAalpha, in B lymphocytes: alternative mRNA processing is independent of differentiation but correlates with antisense RNA levels. , 1997, Nucleic acids research.
[54] R. Koenig,et al. Thyroid hormone receptor variant alpha2. Role of the ninth heptad in dna binding, heterodimerization with retinoid X receptors, and dominant negative activity. , 1996, The Journal of biological chemistry.
[55] M. Lazar,et al. DNA-independent and DNA-dependent Mechanisms Regulate the Differential Heterodimerization of the Isoforms of the Thyroid Hormone Receptor with Retinoid X Receptor* , 1996, The Journal of Biological Chemistry.
[56] M. Lazar,et al. Functional regulation of thyroid hormone receptor variant TR alpha 2 by phosphorylation , 1995, Molecular and cellular biology.
[57] S. Meng,et al. Thyroid hormone responsiveness is developmentally regulated in the rat small intestine: a possible role for the alpha-2 receptor variant. , 1994, Endocrinology.
[58] M. Lazar. Thyroid hormone receptors: multiple forms, multiple possibilities. , 1993, Endocrine reviews.
[59] J. Brosius,et al. On "genomenclature": a comprehensive (and respectful) taxonomy for pseudogenes and other "junk DNA". , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[60] E. Jannini,et al. Developmental expression of mRNAs from a rat C-erbA genomic locus. , 1992, Biochemical and biophysical research communications.
[61] M. Lazar,et al. Inhibition of c-erbA mRNA splicing by a naturally occurring antisense RNA. , 1991, The Journal of biological chemistry.
[62] M. Pfahl,et al. Coordinate expression of functionally distinct thyroid hormone receptor alpha isoforms during neonatal brain development. , 1991, Molecular endocrinology.
[63] M. Lazar,et al. Gene expression from the c-erbA alpha/Rev-ErbA alpha genomic locus. Potential regulation of alternative splicing by opposite strand transcription. , 1990, The Journal of biological chemistry.
[64] K. Strait,et al. Relationship of c-erbA mRNA content to tissue triiodothyronine nuclear binding capacity and function in developing and adult rats. , 1990, The Journal of biological chemistry.
[65] D. Forrest,et al. Contrasting developmental and tissue‐specific expression of alpha and beta thyroid hormone receptor genes. , 1990, The EMBO journal.
[66] T. Mitsuhashi,et al. Regulation of expression of the alternative mRNAs of the rat alpha-thyroid hormone receptor gene. , 1989, The Journal of biological chemistry.
[67] Nobuyuki Miyajima,et al. Two erbA homologs encoding proteins with different T3 binding capacities are transcribed from opposite DNA strands of the same genetic locus , 1989, Cell.
[68] M. Lazar,et al. A novel member of the thyroid/steroid hormone receptor family is encoded by the opposite strand of the rat c-erbA alpha transcriptional unit , 1989, Molecular and cellular biology.
[69] T. Mitsuhashi,et al. Alternative splicing generates messages encoding rat c-erbA proteins that do not bind thyroid hormone. , 1988, Proceedings of the National Academy of Sciences of the United States of America.
[70] S. Izumo,et al. Thyroid hormone receptor α isoforms generated by alternative splicing differentially activate myosin HC gene transcription , 1988, Nature.
[71] Donald F. Tapley,et al. THE MECHANISM OF ACTION OF THYROID HORMONES , 1962 .
[72] Donny D. Licatalosi,et al. RNA processing and its regulation: global insights into biological networks , 2010, Nature Reviews Genetics.
[73] P. Leedman,et al. SRA and its binding partners: an expanding role for RNA-binding coregulators in nuclear receptor-mediated gene regulation. , 2009, Critical reviews in biochemistry and molecular biology.
[74] A. Benedetti,et al. BMC Molecular Biology , 2009 .
[75] R. W. Williams,et al. Antisense transcription: A critical look in both directions , 2008, Cellular and Molecular Life Sciences.
[76] S. Khorasanizadeh,et al. Identification of heme as the ligand for the orphan nuclear receptors REV-ERBalpha and REV-ERBbeta. , 2007, Nature structural & molecular biology.
[77] R. A. Reid,et al. Rev-erbalpha, a heme sensor that coordinates metabolic and circadian pathways. , 2007, Science.
[78] P. Kopp,et al. The thyroid hormone receptor variant alpha2 is a weak antagonist because it is deficient in interactions with nuclear receptor corepressors. , 1998, Endocrinology.
[79] P. Sharp,et al. Splicing of precursors to mRNAs by the spliceosomes , 1993 .
[80] S. Izumo,et al. Thyroid hormone receptor α isoforms generated by alternative splicing differentially activate myosin HC gene transcription , 1988, Nature.