The devil lies in the details: how variations in polysaccharide fine-structure impact the physiology and evolution of gut microbes.
暂无分享,去创建一个
[1] W. York,et al. Generation and structural validation of a library of diverse xyloglucan-derived oligosaccharides, including an update on xyloglucan nomenclature. , 2015, Carbohydrate research.
[2] Alan W Walker,et al. Phylogeny, culturing, and metagenomics of the human gut microbiota. , 2014, Trends in microbiology.
[3] B. Henrissat,et al. How do gut microbes break down dietary fiber? , 2014, Trends in biochemical sciences.
[4] G. Michel,et al. Microorganisms living on macroalgae: diversity, interactions, and biotechnological applications , 2014, Applied Microbiology and Biotechnology.
[5] R. Mackie,et al. Two New Xylanases with Different Substrate Specificities from the Human Gut Bacterium Bacteroides intestinalis DSM 17393 , 2014, Applied and Environmental Microbiology.
[6] H. Brumer,et al. A discrete genetic locus confers xyloglucan metabolism in select human gut Bacteroidetes , 2014, Nature.
[7] Lawrence A. David,et al. Diet rapidly and reproducibly alters the human gut microbiome , 2013, Nature.
[8] Pedro M. Coutinho,et al. The carbohydrate-active enzymes database (CAZy) in 2013 , 2013, Nucleic Acids Res..
[9] H. Gruppen,et al. Comparison of xanthans by the relative abundance of its six constituent repeating units. , 2013, Carbohydrate polymers.
[10] L. Ursell,et al. Genetically dictated change in host mucus carbohydrate landscape exerts a diet-dependent effect on the gut microbiota , 2013, Proceedings of the National Academy of Sciences.
[11] Justin L Sonnenburg,et al. A refined palate: bacterial consumption of host glycans in the gut. , 2013, Glycobiology.
[12] Bernard Henrissat,et al. Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome , 2013, PLoS biology.
[13] Bernard Henrissat,et al. The abundance and variety of carbohydrate-active enzymes in the human gut microbiota , 2013, Nature Reviews Microbiology.
[14] G. Reid,et al. If microbial ecosystem therapy can change your life, what's the problem? , 2013, BioEssays : news and reviews in molecular, cellular and developmental biology.
[15] E. Martens,et al. Dynamic responses of Bacteroides thetaiotaomicron during growth on glycan mixtures , 2013, Molecular microbiology.
[16] D. Mohnen,et al. Evolving views of pectin biosynthesis. , 2013, Annual review of plant biology.
[17] G. Gloor,et al. Stool substitute transplant therapy for the eradication of Clostridium difficile infection: ‘RePOOPulating’ the gut , 2013, Microbiome.
[18] L. Brandt,et al. Fecal microbiota transplantation: past, present and future , 2013, Current opinion in gastroenterology.
[19] D. Hentges. Human Intestinal Microflora in Health and Disease , 2012 .
[20] A. Buléon,et al. Concerted suppression of all starch branching enzyme genes in barley produces amylose-only starch granules , 2012, BMC Plant Biology.
[21] A. Boraston,et al. Bacteria of the human gut microbiome catabolize red seaweed glycans with carbohydrate-active enzyme updates from extrinsic microbes , 2012, Proceedings of the National Academy of Sciences.
[22] W. York,et al. A Galacturonic Acid–Containing Xyloglucan Is Involved in Arabidopsis Root Hair Tip Growth[W] , 2012, Plant Cell.
[23] B. Henrissat,et al. Evolution, substrate specificity and subfamily classification of glycoside hydrolase family 5 (GH5) , 2012, BMC Evolutionary Biology.
[24] T. Smith,et al. Multidomain Carbohydrate-binding Proteins Involved in Bacteroides thetaiotaomicron Starch Metabolism* , 2012, The Journal of Biological Chemistry.
[25] H. Gruppen,et al. In vitro fermentation of 12 dietary fibres by faecal inoculum from pigs and humans , 2012 .
[26] O. Zabotina. Xyloglucan and Its Biosynthesis , 2012, Front. Plant Sci..
[27] H. Flint,et al. Microbial degradation of complex carbohydrates in the gut , 2012, Gut microbes.
[28] S. Firbank,et al. A scissor blade-like closing mechanism implicated in transmembrane signaling in a Bacteroides hybrid two-component system , 2012, Proceedings of the National Academy of Sciences.
[29] E. Martens,et al. How glycan metabolism shapes the human gut microbiota , 2012, Nature Reviews Microbiology.
[30] H. Flint,et al. Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon , 2012, The ISME Journal.
[31] J B L Hoekstra,et al. The therapeutic potential of manipulating gut microbiota in obesity and type 2 diabetes mellitus , 2012, Diabetes, obesity & metabolism.
[32] F. V. van Eeuwijk,et al. Genome-wide association studies for agronomical traits in a world wide spring barley collection , 2012, BMC Plant Biology.
[33] Bernard Henrissat,et al. Recognition and Degradation of Plant Cell Wall Polysaccharides by Two Human Gut Symbionts , 2011, PLoS biology.
[34] G. Cornelis,et al. The N-glycan Glycoprotein Deglycosylation Complex (Gpd) from Capnocytophaga canimorsus Deglycosylates Human IgG , 2011, PLoS pathogens.
[35] R. Knight,et al. Moving pictures of the human microbiome , 2011, Genome Biology.
[36] J. Faith,et al. Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice , 2011, Proceedings of the National Academy of Sciences.
[37] J. German,et al. Oligosaccharide Binding Proteins from Bifidobacterium longum subsp. infantis Reveal a Preference for Host Glycans , 2011, PloS one.
[38] B. Henrissat,et al. A hierarchical classification of polysaccharide lyases for glycogenomics. , 2010, The Biochemical journal.
[39] Michael A McGuckin,et al. Mucolytic Bacteria With Increased Prevalence in IBD Mucosa Augment In Vitro Utilization of Mucin by Other Bacteria , 2010, The American Journal of Gastroenterology.
[40] Michael J Gidley,et al. Heterogeneity in the chemistry, structure and function of plant cell walls. , 2010, Nature chemical biology.
[41] C. Mayer,et al. Substrate-driven gene expression in Roseburia inulinivorans: Importance of inducible enzymes in the utilization of inulin and starch , 2010, Proceedings of the National Academy of Sciences.
[42] R. Mackie,et al. Transcriptomic Analyses of Xylan Degradation by Prevotella bryantii and Insights into Energy Acquisition by Xylanolytic Bacteroidetes* , 2010, The Journal of Biological Chemistry.
[43] J. Sonnenburg,et al. Specificity of Polysaccharide Use in Intestinal Bacteroides Species Determines Diet-Induced Microbiota Alterations , 2010, Cell.
[44] B. Haas,et al. A Catalog of Reference Genomes from the Human Microbiome , 2010, Science.
[45] J. Faith,et al. Dissecting the in Vivo Metabolic Potential of Two Human Gut Acetogens , 2010, The Journal of Biological Chemistry.
[46] K. Roberts. Plant Cell Walls , 2010 .
[47] G. Michel,et al. Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota , 2010, Nature.
[48] I. Graham,et al. Molecular insight into lignocellulose digestion by a marine isopod in the absence of gut microbes , 2010, Proceedings of the National Academy of Sciences.
[49] P. Bork,et al. A human gut microbial gene catalogue established by metagenomic sequencing , 2010, Nature.
[50] T. Smith,et al. SusG: a unique cell-membrane-associated alpha-amylase from a prominent human gut symbiont targets complex starch molecules. , 2010, Structure.
[51] Spencer J. Williams,et al. Mechanistic insights into a Ca2+-dependent family of alpha-mannosidases in a human gut symbiont. , 2010, Nature chemical biology.
[52] R. Knight,et al. The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice , 2009, Science Translational Medicine.
[53] R. Burton,et al. (1,3;1,4)-beta-D-glucans in cell walls of the poaceae, lower plants, and fungi: a tale of two linkages. , 2009, Molecular plant.
[54] Eric C. Martens,et al. Complex Glycan Catabolism by the Human Gut Microbiota: The Bacteroidetes Sus-like Paradigm , 2009, The Journal of Biological Chemistry.
[55] Yoshiharu Nishiyama,et al. Structure and properties of the cellulose microfibril , 2009, Journal of Wood Science.
[56] I. Tanaka,et al. Structural and Functional Analysis of a Glycoside Hydrolase Family 97 Enzyme from Bacteroides thetaiotaomicron* , 2008, Journal of Biological Chemistry.
[57] J. Gordon,et al. Mucosal glycan foraging enhances fitness and transmission of a saccharolytic human gut bacterial symbiont. , 2008, Cell host & microbe.
[58] B. Roe,et al. A core gut microbiome in obese and lean twins , 2008, Nature.
[59] B. Henrissat,et al. Divergence of Catalytic Mechanism within a Glycosidase Family Provides Insight into Evolution of Carbohydrate Metabolism by Human Gut Flora , 2008, Chemistry & biology.
[60] Brandi L. Cantarel,et al. The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics , 2008, Nucleic Acids Res..
[61] J. Gordon,et al. Starch catabolism by a prominent human gut symbiont is directed by the recognition of amylose helices. , 2008, Structure.
[62] M. Hamady,et al. Evolution of Mammals and Their Gut Microbes , 2008, Science.
[63] M. Sinnott,et al. Carbohydrate Chemistry and Biochemistry: Structure and Mechanism , 2007 .
[64] Rodrigo Lopez,et al. Clustal W and Clustal X version 2.0 , 2007, Bioinform..
[65] A. Boraston,et al. Identification and characterization of a novel periplasmic polygalacturonic acid binding protein from Yersinia enterolitica. , 2007, Journal of molecular biology.
[66] H. Flint,et al. Selective colonization of insoluble substrates by human faecal bacteria. , 2007, Environmental microbiology.
[67] A. Voragen,et al. Bilberry xyloglucan--novel building blocks containing beta-xylose within a complex structure. , 2007, Carbohydrate research.
[68] Bernard Henrissat,et al. Dividing the large glycoside hydrolase family 13 into subfamilies: towards improved functional annotations of alpha-amylase-related proteins. , 2006, Protein engineering, design & selection : PEDS.
[69] M. Pop,et al. Metagenomic Analysis of the Human Distal Gut Microbiome , 2006, Science.
[70] J. Ståhlberg,et al. Three-dimensional crystal structure and enzymic characterization of beta-mannanase Man5A from blue mussel Mytilus edulis. , 2006, Journal of molecular biology.
[71] A. Darvill,et al. Structural analysis of xyloglucans in the primary cell walls of plants in the subclass Asteridae. , 2005, Carbohydrate research.
[72] E. Purdom,et al. Diversity of the Human Intestinal Microbial Flora , 2005, Science.
[73] Benjamin P. Westover,et al. Glycan Foraging in Vivo by an Intestine-Adapted Bacterial Symbiont , 2005, Science.
[74] F. Bäckhed,et al. Host-Bacterial Mutualism in the Human Intestine , 2005, Science.
[75] Yanping Wang,et al. Human intestinal bacteria as reservoirs for antibiotic resistance genes. , 2004, Trends in microbiology.
[76] P. Lerouge,et al. Structural investigation of hemicellulosic polysaccharides from Argania spinosa: characterisation of a novel xyloglucan motif. , 2004, Carbohydrate research.
[77] A. Darvill,et al. Structure of the xyloglucan produced by suspension-cultured tomato cells. , 2003, Carbohydrate research.
[78] Lynn K. Carmichael,et al. A Genomic View of the Human-Bacteroides thetaiotaomicron Symbiosis , 2003, Science.
[79] A. Voragen,et al. In vitro fermentability of differently substituted xylo-oligosaccharides. , 2002, Journal of agricultural and food chemistry.
[80] T. Mattila-Sandholm,et al. In vitro fermentation of cereal dietary fibre carbohydrates by probiotic and intestinal bacteria , 2002 .
[81] J. Vincken,et al. Structural analyses of two arabinose containing oligosaccharides derived from olive fruit xyloglucan: XXSG and XLSG. , 2001, Carbohydrate research.
[82] Abigail A. Salyers,et al. Characterization of Four Outer Membrane Proteins Involved in Binding Starch to the Cell Surface ofBacteroides thetaiotaomicron , 2000, Journal of bacteriology.
[83] A. Voragen,et al. Fermentation of plant cell wall derived polysaccharides and their corresponding oligosaccharides by intestinal bacteria. , 2000, Journal of agricultural and food chemistry.
[84] P Colonna,et al. Starch granules: structure and biosynthesis. , 1998, International journal of biological macromolecules.
[85] M. P. Bryant,et al. Robert E. Hungate: pioneer of anaerobic microbial ecology. , 1997, Anaerobe.
[86] F. Rombouts,et al. Fermentation of xyloglucan by intestinal bacteria. , 1996 .
[87] P. Albersheim,et al. The structures of arabinoxyloglucans produced by solanaceous plants. , 1996, Carbohydrate research.
[88] D. Stewart,et al. Plant Cell Walls as Dietary Fibre: Range, Structure, Processing and Function , 1996 .
[89] J. Roth,et al. Virulence Mechanisms of Bacterial Pathogens , 1995 .
[90] R. Hill. Digestion of mucin polysaccharides in vitro by bacteria isolated from the rabbit cecum , 1986, Current Microbiology.
[91] N. Mcneil. The contribution of the large intestine to energy supplies in man. , 1984, The American journal of clinical nutrition.
[92] S. Kominos,et al. Evaluation of a pectin agar medium for isolation of Yersinia enterocolitica within 48 hours. , 1979, American journal of clinical pathology.
[93] S. E. West,et al. Fermentation of mucins and plant polysaccharides by anaerobic bacteria from the human colon , 1977, Applied and environmental microbiology.
[94] S. E. West,et al. Fermentation of mucin and plant polysaccharides by strains of Bacteroides from the human colon , 1977, Applied and environmental microbiology.
[95] W. Moore,et al. Human fecal flora: the normal flora of 20 Japanese-Hawaiians. , 1974, Applied microbiology.
[96] R. Freter,et al. Isolation of anaerobic bacteria from human gingiva and mouse cecum by means of a simplified glove box procedure. , 1969, Applied microbiology.
[97] J. Monod,et al. Genetic regulatory mechanisms in the synthesis of proteins. , 1961, Journal of molecular biology.
[98] R. Freter. EXPERIMENTAL ENTERIC SHIGELLA AND VIBRIO INFECTIONS IN MICE AND GUINEA PIGS , 1956, The Journal of experimental medicine.
[99] C. J. Chamberlain. The Cell Wall , 1907, Botanical Gazette.
[100] M. Pauly,et al. Hemicellulose biosynthesis , 2013, Planta.
[101] P. Lawson,et al. Ruminococcus champanellensis sp. nov., a cellulose-degrading bacterium from human gut microbiota. , 2012, International journal of systematic and evolutionary microbiology.
[102] Peter Ulvskov,et al. Hemicelluloses. , 2010, Annual review of plant biology.
[103] R. Whistler,et al. Structure of chia seed polysaccharide exudate , 1994 .