Genome-wide analysis of drosophila circular RNAs reveals their structural and sequence properties and age-dependent neural accumulation.
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Sol Shenker | Pedro Miura | Brenton R Graveley | Susan E Celniker | Eric C Lai | S. Celniker | E. Lai | B. Graveley | J. Westholm | P. Miura | Piero Sanfilippo | S. Olson | S. Shenker | B. Joseph | Sara Olson | Piero Sanfilippo | Jakub O Westholm | Brian Joseph
[1] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..
[2] Sebastian D. Mackowiak,et al. Circular RNAs are a large class of animal RNAs with regulatory potency , 2013, Nature.
[3] Julia Salzman,et al. Cell-Type Specific Features of Circular RNA Expression , 2013, PLoS genetics.
[4] J. Dow,et al. Using FlyAtlas to identify better Drosophila melanogaster models of human disease , 2007, Nature Genetics.
[5] N. Sharpless,et al. Detecting and characterizing circular RNAs , 2014, Nature Biotechnology.
[6] James B. Brown,et al. Global patterns of tissue-specific alternative polyadenylation in Drosophila. , 2012, Cell reports.
[7] John A. Calarco,et al. Regulation of Vertebrate Nervous System Alternative Splicing and Development by an SR-Related Protein , 2009, Cell.
[8] D. Riesner,et al. Viroids are single-stranded covalently closed circular RNA molecules existing as highly base-paired rod-like structures. , 1976, Proceedings of the National Academy of Sciences of the United States of America.
[9] M. Levine,et al. Neural-specific elongation of 3′ UTRs during Drosophila development , 2011, Proceedings of the National Academy of Sciences.
[10] C. Cocquerelle,et al. Mis‐splicing yields circular RNA molecules , 1993, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[11] Lan Jin,et al. Biological basis for restriction of microRNA targets to the 3' untranslated region in mammalian mRNAs. , 2009, Nature structural & molecular biology.
[12] D. Bartel,et al. Expanded identification and characterization of mammalian circular RNAs , 2014, Genome Biology.
[13] Michael K. Slevin,et al. Circular RNAs are abundant, conserved, and associated with ALU repeats. , 2013, RNA.
[14] Charles Gawad,et al. Circular RNAs Are the Predominant Transcript Isoform from Hundreds of Human Genes in Diverse Cell Types , 2012, PloS one.
[15] T. Cech,et al. The intervening sequence of the ribosomal RNA precursor is converted to a circular RNA in isolated nuclei of tetrahymena , 1981, Cell.
[16] A. Siepel,et al. Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines , 2014, Genome research.
[17] C. Burge,et al. A computational analysis of sequence features involved in recognition of short introns , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[18] B. Berger,et al. Conserved microRNA targeting in Drosophila is as widespread in coding regions as in 3′UTRs , 2010, Proceedings of the National Academy of Sciences.
[19] James B. Brown,et al. Diversity and dynamics of the Drosophila transcriptome , 2014, Nature.
[20] C Joel McManus,et al. Global analysis of trans-splicing in Drosophila , 2010, Proceedings of the National Academy of Sciences.
[21] Mark Wade,et al. Post-transcriptional exon shuffling events in humans can be evolutionarily conserved and abundant. , 2011, Genome research.
[22] B. Graveley. The developmental transcriptome of Drosophila melanogaster , 2010, Nature.
[23] L. Lim,et al. MicroRNA targeting specificity in mammals: determinants beyond seed pairing. , 2007, Molecular cell.
[24] Hong Duan,et al. The regulatory activity of microRNA* species has substantial influence on microRNA and 3′ UTR evolution , 2008, Nature Structural &Molecular Biology.
[25] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[26] Ling-Ling Chen,et al. Complementary Sequence-Mediated Exon Circularization , 2014, Cell.
[27] Schraga Schwartz,et al. Transcriptome-wide discovery of circular RNAs in Archaea , 2011, Nucleic acids research.
[28] Peter Goodfellow,et al. Circular transcripts of the testis-determining gene Sry in adult mouse testis , 1993, Cell.
[29] J. Houseley,et al. Noncanonical RNAs from transcripts of the Drosophila muscleblind gene. , 2006, The Journal of heredity.
[30] Ammar S Naqvi,et al. Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence. , 2011, Genome research.
[31] N. Rajewsky,et al. circRNA biogenesis competes with pre-mRNA splicing. , 2014, Molecular cell.
[32] Manolis Kellis,et al. Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs. , 2007, Genome research.
[33] E. Lai,et al. Widespread and extensive lengthening of 3′ UTRs in the mammalian brain , 2013, Genome research.
[34] Gos Micklem,et al. Supporting Online Material Materials and Methods Figs. S1 to S50 Tables S1 to S18 References Identification of Functional Elements and Regulatory Circuits by Drosophila Modencode , 2022 .
[35] J. Kjems,et al. Natural RNA circles function as efficient microRNA sponges , 2013, Nature.
[36] Kathleen R. Cho,et al. Scrambled exons , 1991, Cell.