TED-Seq Identifies the Dynamics of Poly(A) Length during ER Stress.
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Jun Hee Lee | H. Kwak | J. H. Lee | Yu mi Woo | Hojoong Kwak | Yu Mi Woo | Yeonui Kwak | Sim Namkoong | Katla Kristjánsdóttir | Seung Ha Lee | Sim Namkoong | Yeonui Kwak | K. Kristjánsdóttir | Hojoong Kwak | Katla Kristjánsdóttir
[1] J. H. Lee,et al. Systematic Characterization of Stress-Induced RNA Granulation. , 2018, Molecular cell.
[2] U. Stochaj,et al. Cytoplasmic stress granules: Dynamic modulators of cell signaling and disease. , 2017, Biochimica et biophysica acta. Molecular basis of disease.
[3] Kyong-Tai Kim,et al. Heterogeneous nuclear ribonucleoprotein A1 regulates rhythmic synthesis of mouse Nfil3 protein via IRES-mediated translation , 2017, Scientific Reports.
[4] Leighton J. Core,et al. Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq) , 2016, Nature Protocols.
[5] D. Bartel,et al. mRNA poly(A)-tail changes specified by deadenylation broadly reshape translation in Drosophila oocytes and early embryos , 2016, eLife.
[6] Hyeshik Chang,et al. Regulation of Poly(A) Tail and Translation during the Somatic Cell Cycle. , 2016, Molecular cell.
[7] Anthony Barsic,et al. ATPase-Modulated Stress Granules Contain a Diverse Proteome and Substructure , 2016, Cell.
[8] Y. Hwang,et al. Epigenetic silencing of the MUPCDH gene as a possible prognostic biomarker for cyst growth in ADPKD , 2015, Scientific Reports.
[9] Torsten Seemann,et al. PAT-seq: a method to study the integration of 3′-UTR dynamics with gene expression in the eukaryotic transcriptome , 2015, RNA.
[10] W. Huber,et al. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.
[11] F. Massi,et al. A Conserved Three-nucleotide Core Motif Defines Musashi RNA Binding Specificity* , 2014, The Journal of Biological Chemistry.
[12] T. Nissan,et al. Interrelations between translation and general mRNA degradation in yeast , 2014, Wiley interdisciplinary reviews. RNA.
[13] E. Eyras,et al. The translational landscape of the splicing factor SRSF1 and its role in mitosis , 2014, eLife.
[14] V. Kim,et al. TAIL-seq: genome-wide determination of poly(A) tail length and 3' end modifications. , 2014, Molecular cell.
[15] A. MacNicol,et al. Musashi Protein-directed Translational Activation of Target mRNAs Is Mediated by the Poly(A) Polymerase, Germ Line Development Defective-2* , 2014, The Journal of Biological Chemistry.
[16] D. Lees-Murdock,et al. Efficient Translation of Dnmt1 Requires Cytoplasmic Polyadenylation and Musashi Binding Elements , 2014, PloS one.
[17] D. Bartel,et al. Poly(A)-tail profiling reveals an embryonic switch in translational control , 2014, Nature.
[18] A. Krainer,et al. Isolated pseudo–RNA-recognition motifs of SR proteins can regulate splicing using a noncanonical mode of RNA recognition , 2013, Proceedings of the National Academy of Sciences.
[19] R. Kaufman,et al. ER-stress-induced transcriptional regulation increases protein synthesis leading to cell death , 2013, Nature Cell Biology.
[20] A. Quattrone,et al. mRNA fate , 2013, RNA biology.
[21] Leighton J. Core,et al. Precise Maps of RNA Polymerase Reveal How Promoters Direct Initiation and Pausing , 2013, Science.
[22] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..
[23] N. Sonenberg,et al. Principles of translational control: an overview. , 2012, Cold Spring Harbor perspectives in biology.
[24] A. Bennakhi,et al. Elevated expression of the toll like receptors 2 and 4 in obese individuals: its significance for obesity-induced inflammation , 2012, Journal of Inflammation.
[25] N. Akimitsu,et al. Genome-wide technology for determining RNA stability in mammalian cells , 2012, RNA biology.
[26] J. V. Van Etten,et al. Human Pumilio Proteins Recruit Multiple Deadenylases to Efficiently Repress Messenger RNAs* , 2012, The Journal of Biological Chemistry.
[27] Roy Parker,et al. P-bodies and stress granules: possible roles in the control of translation and mRNA degradation. , 2012, Cold Spring Harbor perspectives in biology.
[28] Anna M. McGeachy,et al. The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments , 2012, Nature Protocols.
[29] Felice-Alessio Bava,et al. Translational control by changes in poly(A) tail length: recycling mRNAs , 2012, Nature Structural &Molecular Biology.
[30] B. Vojtesek,et al. The role of the 3' untranslated region in post-transcriptional regulation of protein expression in mammalian cells. , 2012, RNA biology.
[31] A. Giraldez,et al. Ribosome Profiling Shows That miR-430 Reduces Translation Before Causing mRNA Decay in Zebrafish , 2012, Science.
[32] A. Komar,et al. A Novel Feedback Loop Regulates the Response to Endoplasmic Reticulum Stress via the Cooperation of Cytoplasmic Splicing and mRNA Translation , 2012, Molecular and Cellular Biology.
[33] P. Walter,et al. The Unfolded Protein Response: From Stress Pathway to Homeostatic Regulation , 2011, Science.
[34] F. Urano,et al. Measuring ER stress and the unfolded protein response using mammalian tissue culture system. , 2011, Methods in enzymology.
[35] G. Micklem,et al. Poly(A) Signals Located near the 5′ End of Genes Are Silenced by a General Mechanism That Prevents Premature 3′-End Processing , 2010, Molecular and Cellular Biology.
[36] B. Langmead,et al. Aligning Short Sequencing Reads with Bowtie , 2010, Current protocols in bioinformatics.
[37] Aaron R. Quinlan,et al. BIOINFORMATICS APPLICATIONS NOTE , 2022 .
[38] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[39] Pornpimol Charoentong,et al. ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks , 2009, Bioinform..
[40] H. Okano,et al. Neural RNA-binding protein Musashi1 inhibits translation initiation by competing with eIF4G for PABP , 2008, The Journal of cell biology.
[41] M. Wickens,et al. Multifunctional deadenylase complexes diversify mRNA control , 2008, Nature Reviews Molecular Cell Biology.
[42] P. Anderson,et al. Stress granules: the Tao of RNA triage. , 2008, Trends in biochemical sciences.
[43] F. Gebauer,et al. Trading translation with RNA-binding proteins. , 2008, RNA.
[44] M. Holcik,et al. Cytoplasmic relocalization of heterogeneous nuclear ribonucleoprotein A1 controls translation initiation of specific mRNAs. , 2007, Molecular biology of the cell.
[45] T. Gant,et al. A novel method for poly(A) fractionation reveals a large population of mRNAs with a short poly(A) tail in mammalian cells , 2007, Nucleic acids research.
[46] T. Preiss,et al. Widespread use of poly(A) tail length control to accentuate expression of the yeast transcriptome. , 2007, RNA.
[47] M. Holcik,et al. Subcellular relocalization of a trans-acting factor regulates XIAP IRES-dependent translation. , 2007, Molecular biology of the cell.
[48] Roy Parker,et al. P bodies and the control of mRNA translation and degradation. , 2007, Molecular cell.
[49] Sung Mi Park,et al. BiP Internal Ribosomal Entry Site Activity Is Controlled by Heat-Induced Interaction of NSAP1 , 2006, Molecular and Cellular Biology.
[50] J. Lykke-Andersen,et al. Multiple processing body factors and the ARE binding protein TTP activate mRNA decapping. , 2005, Molecular cell.
[51] M. Gorospe,et al. Global mRNA Stabilization Preferentially Linked to Translational Repression during the Endoplasmic Reticulum Stress Response , 2004, Molecular and Cellular Biology.
[52] M. Hentze,et al. A poly(A) tail-responsive in vitro system for cap- or IRES-driven translation from HeLa cells. , 2004, Methods in molecular biology.
[53] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.
[54] N. Gray,et al. Regulation of mRNA translation by 5'- and 3'-UTR-binding factors. , 2003, Trends in biochemical sciences.
[55] Vasudevan Seshadri,et al. Translational control by the 3'-UTR: the ends specify the means. , 2003, Trends in biochemical sciences.
[56] D. Ron,et al. Translational control in the endoplasmic reticulum stress response. , 2002, The Journal of clinical investigation.
[57] J. Guhaniyogi,et al. Regulation of mRNA stability in mammalian cells. , 2001, Gene.
[58] M. Kiledjian,et al. The Poly(A)-Binding Protein and an mRNA Stability Protein Jointly Regulate an Endoribonuclease Activity , 2000, Molecular and Cellular Biology.
[59] Susumu Goto,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 2000, Nucleic Acids Res..
[60] A. Krainer,et al. Crystal structure of the two-RRM domain of hnRNP A1 (UP1) complexed with single-stranded telomeric DNA. , 1999, Genes & development.
[61] M. Wickens,et al. Life and death in the cytoplasm: messages from the 3' end. , 1997, Current opinion in genetics & development.
[62] M. Wormington. Unmasking the role of the 3' UTR in the cytoplasmic polyadenylation and translational regulation of maternal mRNAs. , 1994, BioEssays : news and reviews in molecular, cellular and developmental biology.
[63] A. Sachs,et al. Poly(A) tail metabolism and function in eucaryotes. , 1993, The Journal of biological chemistry.
[64] P. Cullen,et al. Thapsigargin, a tumor promoter, discharges intracellular Ca2+ stores by specific inhibition of the endoplasmic reticulum Ca2(+)-ATPase. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[65] Ronald W. Davis,et al. A single domain of yeast poly(A)-binding protein is necessary and sufficient for RNA binding and cell viability , 1987, Molecular and cellular biology.