Spatially Explicit Modeling in Ecology: A Review

The use of spatially explicit models (SEMs) in ecology has grown enormously in the past two decades. One major advancement has been that fine-scale details of landscapes, and of spatially dependent biological processes, such as dispersal and invasion, can now be simulated with great precision, due to improvements in computer technology. Many areas of modeling have shifted toward a focus on capturing these fine-scale details, to improve mechanistic understanding of ecosystems. However, spatially implicit models (SIMs) have played a dominant role in ecology, and arguments have been made that SIMs, which account for the effects of space without specifying spatial positions, have an advantage of being simpler and more broadly applicable, perhaps contributing more to understanding. We address this debate by comparing SEMs and SIMs in examples from the past few decades of modeling research. We argue that, although SIMs have been the dominant approach in the incorporation of space in theoretical ecology, SEMs have unique advantages for addressing pragmatic questions concerning species populations or communities in specific places, because local conditions, such as spatial heterogeneities, organism behaviors, and other contingencies, produce dynamics and patterns that usually cannot be incorporated into simpler SIMs. SEMs are also able to describe mechanisms at the local scale that can create amplifying positive feedbacks at that scale, creating emergent patterns at larger scales, and therefore are important to basic ecological theory. We review the use of SEMs at the level of populations, interacting populations, food webs, and ecosystems and argue that SEMs are not only essential in pragmatic issues, but must play a role in the understanding of causal relationships on landscapes.

[1]  M. Finney,et al.  Modeling wildfire risk to northern spotted owl (Strix occidentalis caurina) habitat in Central Oregon, USA , 2007 .

[2]  J. G. Skellam Random dispersal in theoretical populations , 1951, Biometrika.

[3]  Ilkka Hanski,et al.  Metapopulation dynamics and conservation: A spatially explicit model applied to butterflies , 1994 .

[4]  Sean C. Ahearn,et al.  TIGMOD: an individual-based spatially explicit model for simulating tiger/human interaction in multiple use forests , 2001 .

[5]  Peter Kareiva,et al.  Spatial ecology : the role of space in population dynamics and interspecific interactions , 1998 .

[6]  D. Green,et al.  Interactions matter—complexity in landscapes and ecosystems , 2005 .

[7]  J. G. Skellam Random dispersal in theoretical populations , 1951, Biometrika.

[8]  Division on Earth Ecological Knowledge and Environmental Problem-Solving: Concepts and Case Studies , 1986 .

[9]  J. R. Wallis,et al.  Some ecological consequences of a computer model of forest growth , 1972 .

[10]  Uta Berger,et al.  A new approach to spatially explicit modelling of forest dynamics: spacing, ageing and neighbourhood competition of mangrove trees , 2000 .

[11]  Larry J. Weber,et al.  Mussel dynamics model: A hydroinformatics tool for analyzing the effects of different stressors on the dynamics of freshwater mussel communities , 2006 .

[12]  Helene H. Wagner,et al.  Landscape Genetics , 2008 .

[13]  D. DeAngelis,et al.  Plant toxins and trophic cascades alter fire regime and succession on a boreal forest landscape , 2012 .

[14]  Otso Ovaskainen,et al.  Metapopulation theory for fragmented landscapes. , 2003, Theoretical population biology.

[15]  A. Suarez,et al.  Predicting Argentine ant spread over the heterogeneous landscape using a spatially explicit stochastic model. , 2009, Ecological applications : a publication of the Ecological Society of America.

[16]  Volker Grimm,et al.  Home range dynamics and population regulation: An individual-based model of the common shrew Sorex araneus , 2007 .

[17]  Andrea Rinaldo,et al.  Landscape evolution in tidal embayments: Modeling the interplay of erosion, sedimentation, and vegetation dynamics , 2006 .

[18]  K. Wiegand,et al.  Trees, grass, and fire in humid savannas—The importance of life history traits and spatial processes , 2016 .

[19]  J. Kreft,et al.  Biofilms promote altruism. , 2004, Microbiology.

[20]  P. Hogeweg Cellular automata as a paradigm for ecological modeling , 1988 .

[21]  R. Levins,et al.  Regional Coexistence of Species and Competition between Rare Species. , 1971, Proceedings of the National Academy of Sciences of the United States of America.

[22]  Jay F. Martin,et al.  Interaction and spatial distribution of wetland nitrogen processes , 1997 .

[23]  A. A. Kinahana,et al.  Ambient temperature as a determinant of landscape use in the savanna elephant , Loxodonta africana , 2006 .

[24]  Marten Scheffer,et al.  Local Facilitation May Cause Tipping Points on a Landscape Level Preceded by Early-Warning Indicators , 2015, The American Naturalist.

[25]  J. Lawton Are there general laws in ecology , 1999 .

[26]  Robyn K. Whipp Food Webs at the Landscape Level , 2005 .

[27]  Charles D. Canham,et al.  Causes and consequences of resource heterogeneity in forests : interspecific variation in light transmission by canopy trees , 1994 .

[28]  F. Sklar,et al.  Modeling Coastal Landscape Dynamics , 1990 .

[29]  Larry B. Crowder,et al.  An individual-based, spatially-explicit simulation model of the population dynamics of the endangered red-cockaded woodpecker, Picoides borealis , 1998 .

[30]  Alan Hastings,et al.  Models of spatial spread: A synthesis , 1996 .

[31]  明 大久保,et al.  Diffusion and ecological problems : mathematical models , 1980 .

[32]  N. Kenkel,et al.  Vegetation–environment relationships of an inland boreal salt pan , 1991 .

[33]  C. Canham,et al.  A neighborhood analysis of canopy tree competition : effects of shading versus crowding , 2004 .

[34]  Su Yean Teh,et al.  Competition between Hardwood Hammocks and Mangroves , 2007, Ecosystems.

[35]  H. Pulliam,et al.  Sources, Sinks, and Population Regulation , 1988, The American Naturalist.

[36]  Daniel R. Lynch,et al.  Spatially-explicit individual based modeling of marine populations: A review of the advances in the 1990s , 2001 .

[37]  C. Cosner,et al.  Spatial Ecology via Reaction-Diffusion Equations , 2003 .

[38]  Bret D. Elderd,et al.  Hydrology, habitat change and population demography: an individual‐based model for the endangered Cape Sable seaside sparrow Ammodramus maritimus mirabilis , 2007 .

[39]  Birgit Müller,et al.  A standard protocol for describing individual-based and agent-based models , 2006 .

[40]  Sonia Kéfi,et al.  More than a meal… integrating non-feeding interactions into food webs. , 2012, Ecology letters.

[41]  S. Hubbell,et al.  The unified neutral theory of biodiversity and biogeography at age ten. , 2011, Trends in ecology & evolution.

[42]  T. Kohyama,et al.  Size-structured tree populations in gap-dynamic forest-the forest architecture hypothesis for the stable coexistence of species , 1993 .

[43]  Florian Jeltsch,et al.  Tree Spacing and Coexistence in Semiarid Savannas , 1996 .

[44]  Jonathan M. Chase,et al.  The metacommunity concept: a framework for multi-scale community ecology , 2004 .

[45]  Uta Berger,et al.  Making Predictions in a Changing World: The Benefits of Individual-Based Ecology , 2014, Bioscience.

[46]  R. Busing,et al.  The Unified Neutral Theory of Biodiversity and Biogeography , 2002 .

[47]  Thomas J. Miller,et al.  Contribution of individual-based coupled physical-biological models to understanding recruitment in marine fish populations , 2007 .

[48]  Douglas H. Deutschman,et al.  Details That Matter: The Spatial Distribution of Individual Trees Maintains Forest Ecosystem Function , 1995 .

[49]  Florian D. Schneider,et al.  Spatially heterogeneous pressure raises risk of catastrophic shifts , 2016, Theoretical Ecology.

[50]  A. Hermann,et al.  Development of a spatially explicit, individual-based model of marine fish early life history , 1996 .

[51]  M. P.R.,et al.  A METHOD FOR SCALING VEGETATION DYNAMICS: THE ECOSYSTEM DEMOGRAPHY MODEL (ED) , 2022 .

[52]  R S Cantrell,et al.  Spatial heterogeneity and critical patch size: Area effects via diffusion in closed environments. , 2001, Journal of theoretical biology.

[53]  D. Tilman Competition and Biodiversity in Spatially Structured Habitats , 1994 .

[54]  Yegang Wu,et al.  SOUTH FLORIDA: THE REALITY OF CHANGE AND THE PROSPECTS FOR SUSTAINABILITY: The design of ecological landscape models for Everglades restoration , 2001 .

[55]  Yosef Cohen,et al.  A SPATIALLY EXPLICIT MODEL OF MOOSE FORAGINGAND ENERGETICS , 1997 .

[56]  Frank Wilczek,et al.  Nonlinear Physics of Ecosystems , 2015 .

[57]  Donald L. DeAngelis,et al.  Simulating mechanisms for dispersal, production and stranding of small forage fish in temporary wetland habitats , 2013 .

[58]  Eric J. Gustafson,et al.  The Effect of Landscape Heterogeneity on the Probability of Patch Colonization , 1996 .

[59]  G. Booth,et al.  BacSim, a simulator for individual-based modelling of bacterial colony growth. , 1998, Microbiology.

[60]  R. Dial The Unified Neutral Theory of Biodiversity and Biogeography.Monographs in Population Biology, Volume 32. ByStephen P Hubbell.Princeton (New Jersey): Princeton University Press. $75.00 (hardcover); $29.95 (paper). xiv + 375 p; ill.; index. ISBN: 0–691–02129–5 (hc); 0–691–02128–7 (pb). 2001. , 2002 .

[61]  Qiuwen Chen,et al.  Three-dimensional eutrophication model and application to Taihu Lake, China. , 2008, Journal of environmental sciences.

[62]  M. Heath,et al.  Modelling the advection of herring larvae in the North Sea , 1989, Nature.

[63]  Michael Potthoff,et al.  Clumped dispersal and species coexistence , 2006 .

[64]  Denis Mollison,et al.  Spatial Contact Models for Ecological and Epidemic Spread , 1977 .

[65]  D. Mladenoff LANDIS and forest landscape models , 2004 .

[66]  D. DeAngelis,et al.  A simulation study of the spatio-temporal dynamics of the unionid mussels , 1997 .

[67]  Hartwig H. Hochmair,et al.  Simulating the Spread of an Invasive Termite in an Urban Environment using a Stochastic Individual-Based Model , 2013, Environmental entomology.

[68]  Arthur J. Gold,et al.  Challenges to incorporating spatially and temporally explicit phenomena (hotspots and hot moments) in denitrification models , 2009 .

[69]  P. Chesson General theory of competitive coexistence in spatially-varying environments. , 2000, Theoretical population biology.

[70]  J. Walters Application of Ecological Principles to the Management of Endangered Species: The Case of the Red-Cockaded Woodpecker , 1991 .

[71]  M. Gatto,et al.  On spatially explicit models of cholera epidemics , 2010, Journal of The Royal Society Interface.

[72]  Thorsten Wiegand,et al.  Expansion of Brown Bears (Ursus arctos) into the Eastern Alps: A Spatially Explicit Population Model , 2004, Biodiversity & Conservation.

[73]  Cang Hui,et al.  Metapopulation dynamics and distribution, and environmental heterogeneity induced by niche construction , 2004 .

[74]  Monica G. Turner,et al.  A landscape simulation model of winter foraging by large ungulates , 1993 .

[75]  P. Adler,et al.  The effect of grazing on the spatial heterogeneity of vegetation , 2001, Oecologia.

[76]  S. Pacala,et al.  A METHOD FOR SCALING VEGETATION DYNAMICS: THE ECOSYSTEM DEMOGRAPHY MODEL (ED) , 2001 .

[77]  Donald L. DeAngelis,et al.  Modeling apple snail population dynamics on the Everglades landscape , 2015, Landscape Ecology.

[78]  H. Olff,et al.  Long-distance interactions regulate the structure and resilience of coastal ecosystems. , 2015, Annual review of marine science.

[79]  A. Hirzel,et al.  Modelling functional landscape connectivity from genetic population structure: a new spatially explicit approach , 2010, Molecular ecology.

[80]  M. Spencer The effects of habitat size and energy on food web structure: An individual-based cellular automata model , 1997 .

[81]  C. Topping,et al.  The influence of landscape diversity and heterogeneity on spatial dynamics of agrobiont linyphiid spiders: An individual-based model , 2005, BioControl.

[82]  Su Yean Teh,et al.  Spatial pattern formation of coastal vegetation in response to external gradients and positive feedbacks affecting soil porewater salinity: a model study , 2011, Landscape Ecology.

[83]  D. DeAngelis,et al.  Strong species-environment feedback shapes plant community assembly along environmental gradients , 2013, Ecology and evolution.

[84]  Thomas M. Smith,et al.  Spatial applications of gap models , 1991 .

[85]  A. Parsons,et al.  ANALYSIS OF THE COEXISTENCE MECHANISMS FOR GRASSES AND LEGUMES IN GRAZING SYSTEMS , 1996 .

[86]  G. Huse Individual‐based Modeling and Ecology , 2008 .

[87]  Richard Law,et al.  Spatio‐temporal development of forests – current trends in field methods and models , 2004 .

[88]  David B. Lindenmayer,et al.  A Review of the Generic Computer Programs ALEX, RAMAS/space and VORTEX for Modelling the Viability of Wildlife Metapopulations , 1995 .

[89]  Kim Cuddington,et al.  Predator‐Prey Dynamics and Movement in Fractal Environments , 2002, The American Naturalist.

[90]  M. Rietkerk,et al.  A Putative Mechanism for Bog Patterning , 2004, The American Naturalist.

[91]  W. F. Wolff An individual-oriented model of a wading bird nesting colony , 1994 .

[92]  Oswald J. Schmitz,et al.  Combining field experiments and individual‐based modeling to identify the dynamically relevant organizational scale in a field system , 2000 .

[93]  Michel Loreau,et al.  Spatial Flows and the Regulation of Ecosystems , 2004, The American Naturalist.

[94]  Peter Odderskær,et al.  ALMaSS, an agent-based model for animals in temperate European landscapes , 2003 .

[95]  René A. Salinas,et al.  A dynamic landscape model for fish in the Everglades and its application to restoration , 2000 .

[96]  Howard B. Stauffer,et al.  WHAT CAN HABITAT PREFERENCE MODELS TELL US? TESTS USING A VIRTUAL TROUT POPULATION , 2003 .

[97]  Uta Berger,et al.  Pattern-Oriented Modeling of Agent-Based Complex Systems: Lessons from Ecology , 2005, Science.

[98]  John A. Silander,et al.  Field Tests of Neighborhood Population Dynamic Models of Two Annual Weed Species , 1990 .

[99]  Rebecca L. Lewison,et al.  Exploring behavior of an unusual megaherbivore: a spatially explicit foraging model of the hippopotamus , 2004 .

[100]  S. Pacala,et al.  Forest models defined by field measurements: I. The design of a northeastern forest simulator , 1993 .

[101]  Tess F. J. Voorde,et al.  Are there evolutionary consequences of plant–soil feedbacks along soil gradients? , 2014 .

[102]  S. Pacala,et al.  Neighborhood Models of Plant Population Dynamics. I. Single-Species Models of Annuals , 1985, The American Naturalist.

[103]  H. Muller‐Landau,et al.  The Effects of Density, Spatial Pattern, and Competitive Symmetry on Size Variation in Simulated Plant Populations , 2001, The American Naturalist.

[104]  S. Levin,et al.  Tree cover in sub-Saharan Africa: rainfall and fire constrain forest and savanna as alternative stable states. , 2011, Ecology.

[105]  Alasdair I. Houston,et al.  Spatially explicit, individual-based, behavioural models of the annual cycle of two migratory goose populations , 2000 .

[106]  Thorsten Wiegand,et al.  Fragmented landscapes, road mortality and patch connectivity: modelling influences on the dispersal of Eurasian lynx , 2004 .

[107]  M. Ayres,et al.  Jensen's inequality predicts effects of environmental variation. , 1999, Trends in ecology & evolution.

[108]  G. Booth,et al.  Modelling food web complexity: The consequences of individual-based, spatially explicit behavioural ecology on trophic interactions , 1997, Evolutionary Ecology.

[109]  D. DeAngelis,et al.  Optimal exploitation of spatially distributed trophic resources and population stability , 2002 .

[110]  Florian Jeltsch,et al.  Grazing response patterns indicate isolation of semi‐natural European grasslands , 2014 .

[111]  Gregory E Schwarz,et al.  The Role of Headwater Streams in Downstream Water Quality1 , 2007, Journal of the American Water Resources Association.

[112]  Jianguo Liu,et al.  FORMOSAIC: an individual-based spatially explicit model for simulating forest dynamics in landscape mosaics , 1998 .

[113]  Amy H Auchincloss,et al.  A new tool for epidemiology: the usefulness of dynamic-agent models in understanding place effects on health. , 2008, American journal of epidemiology.

[114]  Hauke Reuter,et al.  Emerging properties on the individual level: modelling the reproduction phase of the European robin , 1999 .

[115]  Maria D. Tchakerian,et al.  Review of forest landscape models: Types, methods, development and applications , 2009 .

[116]  M. Anand,et al.  Feedbacks between vegetation and disturbance processes promote long-term persistence of forest-grassland mosaics in south Brazil , 2014 .

[117]  S. Fretwell,et al.  On territorial behavior and other factors influencing habitat distribution in birds , 1969 .

[118]  Wolfgang Cramer,et al.  Scaling Issues in Forest Succession Modelling , 2000 .

[119]  Thorsten Wiegand,et al.  Long-term dynamics of a semiarid grass steppe under stochastic climate and different grazing regimes: A simulation analysis , 2008 .

[120]  J W Wimpenny,et al.  Individual-based modelling of biofilms. , 2001, Microbiology.

[121]  Jacoby Carter,et al.  MOAB : a spatially explicit, individual-based expert system for creating animal foraging models , 1999 .

[122]  David A. Bennett,et al.  Modelling adaptive, spatially aware, and mobile agents: Elk migration in Yellowstone , 2006, Int. J. Geogr. Inf. Sci..

[123]  D. Lindenmayer,et al.  INFERRING PROCESS FROM PATTERN: CAN TERRITORY OCCUPANCY PROVIDE INFORMATION ABOUT LIFE HISTORY PARAMETERS? , 2001 .

[124]  S. Pacala,et al.  Understanding height-structured competition in forests: is there an R* for light? , 2007, Proceedings of the Royal Society B: Biological Sciences.

[125]  J. Roughgarden 13. Production Functions from Ecological Populations: A Survey with Emphasis on Spatially Implicit Models , 1998 .

[126]  Eric F. Lambin,et al.  The landscape epidemiology of foot-and-mouth disease in South Africa: A spatially explicit multi-agent simulation , 2011 .

[127]  G. Perry,et al.  Spatial modelling of succession-disturbance dynamics in forest ecosystems: Concepts and examples , 2008 .

[128]  Alexis Drogoul,et al.  SWORM: an agent‐based model to simulate the effect of earthworms on soil structure , 2009 .

[129]  Sallie W. Chisholm,et al.  Emergent Biogeography of Microbial Communities in a Model Ocean , 2007, Science.

[130]  Debra P. C. Peters,et al.  Strategies for ecological extrapolation , 2004 .

[131]  Marco Marani,et al.  Vegetation engineers marsh morphology through multiple competing stable states , 2013, Proceedings of the National Academy of Sciences.

[132]  L. Fahrig Effects of Habitat Fragmentation on Biodiversity , 2003 .

[133]  H. Ronald Pulliam,et al.  Potential Effects of a Forest Management Plan on Bachman's Sparrows (Aimophila aestivalis): Linking a Spatially Explicit Model with GIS , 1995 .

[134]  L. Ginzburg,et al.  From controversy to consensus: the indirect interference functional response , 2008 .

[135]  A two-dimensional individual-based model of territorial behaviour: possible population consequences of kinship in red grouse , 1997 .

[136]  S. Levin The problem of pattern and scale in ecology , 1992 .

[137]  Y. Cohen,et al.  Generation of Spatial Patterns in Boreal Forest Landscapes , 1999, Ecosystems.

[138]  R. Callaway,et al.  Novel Weapons: Invasive Success and the Evolution of Increased Competitive Ability , 2004 .

[139]  H. Bugmann A Review of Forest Gap Models , 2001 .

[140]  R. Durrett,et al.  The Importance of Being Discrete (and Spatial) , 1994 .

[141]  C. Bigler,et al.  Do small-grain processes matter for landscape scale questions? Sensitivity of a forest landscape model to the formulation of tree growth rate , 2012, Landscape Ecology.

[142]  R. Etienne,et al.  Frugivores and cheap fruits make fruiting fruitful , 2014, Journal of Evolutionary Biology.

[143]  Donald L. DeAngelis,et al.  Allowing macroalgae growth forms to emerge: Use of an agent-based model to understand the growth and spread of macroalgae in Florida coral reefs, with emphasis on Halimeda tuna , 2008 .

[144]  J. Travis,et al.  Habitat persistence, habitat availability and the evolution of dispersal , 1999, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[145]  Daniel Mailly,et al.  Advances in spatial, individual-based modelling of forest dynamics , 2004 .

[146]  Ilkka Hanski,et al.  Spatially realistic theory of metapopulation ecology , 2001, Naturwissenschaften.

[147]  F. Chapin,et al.  A frame-based spatially explicit model of subarctic vegetation response to climatic change: comparison with a point model , 2000, Landscape Ecology.

[148]  A. Ellison,et al.  Response of a Wetland Vascular Plant Community to Disturbance: A Simulation Study , 1995 .

[149]  J. Ehrenfeld,et al.  FEEDBACK IN THE PLANT-SOIL SYSTEM , 2005 .

[150]  B. Danielson,et al.  Spatially Explicit Population Models: Current Forms and Future Uses , 1995 .

[151]  E. Houde,et al.  Emerging from Hjort's Shadow , 2008 .

[152]  Christian Messier,et al.  Use of a spatially explicit individual-tree model (SORTIE/BC) to explore the implications of patchiness in structurally complex forests , 2003 .

[153]  F. Vázquez,et al.  The Independent and Interactive Effects of Tree‐Tree Establishment Competition and Fire on Savanna Structure and Dynamics , 2010, The American Naturalist.

[154]  Peter A. Abrams,et al.  Predators that Benefit Prey and Prey that Harm Predators: Unusual Effects of Interacting Foraging Adaptation , 1992, The American Naturalist.

[155]  M. Kirwan,et al.  A coupled geomorphic and ecological model of tidal marsh evolution , 2007, Proceedings of the National Academy of Sciences.

[156]  R M Sibly,et al.  Risk Assessment of UK Skylark Populations Using Life-History and Individual-Based Landscape Models , 2005, Ecotoxicology.

[157]  Jason L. Brown,et al.  Predicting the genetic consequences of future climate change: The power of coupling spatial demography, the coalescent, and historical landscape changes. , 2016, American journal of botany.

[158]  Wolf M. Mooij,et al.  Search paths of swans foraging on spatially autocorrelated tubers , 2002 .

[159]  J. Dushoff,et al.  SCALING FROM TREES TO FORESTS: TRACTABLE MACROSCOPIC EQUATIONS FOR FOREST DYNAMICS , 2008 .

[160]  Florian Jeltsch,et al.  Reversed effects of grazing on plant diversity: the role of below- ground competition and size symmetry , 2009 .

[161]  Monika Schwager,et al.  The state of plant population modelling in light of environmental change , 2008 .

[162]  J. H. Petersen,et al.  Dynamics of prey moving through a predator field: a model of migrating juvenile salmon. , 2000, Mathematical biosciences.

[163]  Donald L. DeAngelis,et al.  Exploring the effect of drought extent and interval on the Florida snail kite: interplay between spatial and temporal scales , 2002 .

[164]  Jianguo Wu,et al.  A patch-based spatial modeling approach: conceptual framework and simulation scheme , 1997 .

[165]  Andreas Huth,et al.  Lessons learned from applying a forest gap model to understand ecosystem and carbon dynamics of complex tropical forests , 2016 .

[166]  S. Fretwell Food chain dynamics: the central theory of ecology? , 1987 .

[167]  Alexander Arpaci,et al.  Modelling natural disturbances in forest ecosystems: a review , 2011 .

[168]  J. Gamarra,et al.  Metapopulation Ecology , 2007 .

[169]  Sonia Kéfi,et al.  Local facilitation, bistability and transitions in arid ecosystems. , 2007, Theoretical population biology.

[170]  D. DeAngelis,et al.  Evaluating the effect of salinity on a simulated American crocodile (Crocodylus acutus) population with applications to conservation and Everglades restoration , 2004 .

[171]  J. Lawton,et al.  POSITIVE AND NEGATIVE EFFECTS OF ORGANISMS AS PHYSICAL ECOSYSTEM ENGINEERS , 1997 .

[172]  L. Segel,et al.  Hypothesis for origin of planktonic patchiness , 1976, Nature.

[173]  Paul R Moorcroft,et al.  Mechanistic home range models capture spatial patterns and dynamics of coyote territories in Yellowstone , 2006, Proceedings of the Royal Society B: Biological Sciences.

[174]  R. Macarthur The Problem of Pattern and Scale in Ecology: The Robert H. MacArthur Award Lecture , 2005 .

[175]  N. Kenkel,et al.  Dynamics of emergent vegetation along natural gradients of water depth and salinity in a prairie marsh: delayed influences of competition , 1997 .

[176]  R. Gardner,et al.  Quantitative Methods in Landscape Ecology , 1991 .

[177]  William G. Wilson,et al.  Mobility versus density-limited predator-prey dynamics on different spatial scales , 1991, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[178]  C. Klausmeier,et al.  Regular and irregular patterns in semiarid vegetation , 1999, Science.

[179]  Nicolas Schtickzelle,et al.  Metapopulation dynamics of the bog fritillary butterfly: comparison of demographic parameters and dispersal between a continuous and a highly fragmented landscape , 2003, Landscape Ecology.

[180]  B. Breckling,et al.  Influence of activity in a heterogeneous environment on the dynamics of fish growth: an individual‐based model of roacl , 2002 .

[181]  Dean L. Urban,et al.  MODELING ECOLOGICAL PROCESSES ACROSS SCALES , 2005 .

[182]  Robert A. Desharnais,et al.  HISTORY AND CURRENT DEVELOPMENT OF A PARADIGM OF PREDATION IN ROCKY INTERTIDAL COMMUNITIES , 2002 .

[183]  F. Hellweger,et al.  A bunch of tiny individuals—Individual-based modeling for microbes , 2009 .

[184]  Hazel R. Parry,et al.  Aphid population response to agricultural landscape change: A spatially explicit, individual-based model , 2006 .

[185]  F. Chapin,et al.  Modeling the Influence of Topographic Barriers on Treeline Advance at the Forest-Tundra Ecotone in Northwestern Alaska , 2001 .

[186]  Uta Berger,et al.  TOWARDS A STANDARD FOR THE INDIVIDUAL‐BASED MODELING OF PLANT POPULATIONS: SELF‐THINNING AND THE FIELD‐OF‐NEIGHBORHOOD APPROACH , 2002 .

[187]  M. Turner,et al.  Usefulness of spatially explicit population models in land management , 1995 .

[188]  D. DeAngelis,et al.  A spatial individual-based model predicting a great impact of copious sugar sources and resting sites on survival of Anopheles gambiae and malaria parasite transmission , 2015, Malaria Journal.

[189]  The interaction of spatial scale and predator-prey functional response , 1997 .

[190]  Simon A. Levin,et al.  Modeling tiger population and territory dynamics using an agent-based approach , 2015 .

[191]  Ricard V. Solé,et al.  Population Cycles and Spatial Patterns in Snowshoe Hares: an Individual-Oriented Simulation , 1997 .

[192]  Thorsten Wiegand,et al.  Dealing with Uncertainty in Spatially Explicit Population Models , 2004, Biodiversity & Conservation.

[193]  G. Huse,et al.  Modelling changes in migration pattern of herring: collective behaviour and numerical domination , 2002 .

[194]  H. Olff,et al.  How habitat-modifying organisms structure the food web of two coastal ecosystems , 2016, Proceedings of the Royal Society B: Biological Sciences.

[195]  E. Schertzer,et al.  Implications of the spatial dynamics of fire spread for the bistability of savanna and forest , 2015, Journal of mathematical biology.

[196]  E. J. Comiskey,et al.  Landscape Modeling for Everglades Ecosystem Restoration , 1998, Ecosystems.

[197]  J. Wilson,et al.  Positive-feedback Switches in Plant Communities , 1992 .

[198]  Annabel Porté,et al.  Modelling mixed forest growth: a review of models for forest management , 2002 .

[199]  H. Shugart A Theory of Forest Dynamics , 1984 .

[200]  D. C. West,et al.  Simulated Forest Response to Chronic Air Pollution Stress , 1980 .

[201]  R. Gardner,et al.  Spatial processes that maintain biodiversity in plant communities , 2008 .

[202]  N. LeRoy Poff,et al.  Habitat Heterogeneity and Algal-Grazer Interactions in Streams: Explorations with a Spatially Explicit Model , 1997, Journal of the North American Benthological Society.

[203]  R. Lindsay,et al.  The use of small-scale surface patterns in the classification of British Peatlands , 1985 .

[204]  M. odelling Incorporating behavioral-ecological strategies in pattern-oriented modeling of caribou habitat use in a highly industrialized landscape , 2014 .

[205]  H. Shugart Terrestrial Ecosystems in Changing Environments , 1998 .

[206]  Darren J. Bender,et al.  Evaluation of patch isolation metrics in mosaic landscapes for specialist vs. generalist dispersers , 2004, Landscape Ecology.

[207]  H. Bugmann A Simplified Forest Model to Study Species Composition Along Climate Gradients , 1996 .

[208]  Kelly K. Caylor,et al.  Termite mounds can increase the robustness of dryland ecosystems to climatic change , 2015, Science.

[209]  Aurélie Coulon,et al.  Identifying future research needs in landscape genetics: where to from here? , 2009, Landscape Ecology.

[210]  D. DeAngelis,et al.  A simulation model for projecting changes in salinity concentrations and species dominance in the coastal margin habitats of the Everglades , 2008 .

[211]  Gary Paul Nabhan,et al.  The Forgotten Pollinators , 1996 .

[212]  K S McCann,et al.  The dynamics of spatially coupled food webs. , 2005, Ecology letters.

[213]  Otso Ovaskainen,et al.  HABITAT-SPECIFIC MOVEMENT PARAMETERS ESTIMATED USING MARK–RECAPTURE DATA AND A DIFFUSION MODEL , 2004 .