Molecular Phylogeny and Description of the Novel Katablepharid Roombia truncata gen. et sp. nov., and Establishment of the Hacrobia Taxon nov
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Aleš Horák | Brian S. Leander | Patrick J. Keeling | A. Horák | B. Leander | P. Keeling | N. Okamoto | Noriko Okamoto | Chitchai Chantangsi | Chitchai Chantangsi
[1] P. Kugrens,et al. Ultrastructure, biogenesis, and functions of extrusive organelles in selected non-ciliate protists , 1994, Protoplasma.
[2] N. Patron,et al. Gene Replacement of Fructose-1,6-Bisphosphate Aldolase Supports the Hypothesis of a Single Photosynthetic Ancestor of Chromalveolates , 2004, Eukaryotic Cell.
[3] H. Brinkmann,et al. Plastid Isoprenoid Metabolism in the Oyster Parasite Perkinsus marinus Connects Dinoflagellates and Malaria Pathogens—New Impetus for Studying Alveolates , 2007, Journal of Molecular Evolution.
[4] T. Kuroiwa,et al. A cryptic algal group unveiled: a plastid biosynthesis pathway in the oyster parasite Perkinsus marinus. , 2008, Molecular biology and evolution.
[5] D. Roos,et al. Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids. , 2001, Molecular biology and evolution.
[6] N. Okamoto,et al. Hatena arenicola gen. et sp. nov., a katablepharid undergoing probable plastid acquisition. , 2006, Protist.
[7] Y. Inagaki,et al. Multiple Gene Phylogenies Support the Monophyly of Cryptomonad and Haptophyte Host Lineages , 2007, Current Biology.
[8] T. Weisse,et al. Seasonal succession and taxon-specific bacterial grazing rates of heterotrophic nanoflagellates in Lake Constance , 2001 .
[9] P. Keeling. Chromalveolates and the Evolution of Plastids by Secondary Endosymbiosis 1 , 2009, The Journal of eukaryotic microbiology.
[10] H. Arndt,et al. Taxonomic composition and biomass of heterotrophic flagellates in relation to lake trophy and season , 2001 .
[11] E. Sherr,et al. Significance of predation by protists in aquatic microbial food webs , 2004, Antonie van Leeuwenhoek.
[12] T. Cavalier-smith,et al. Chromalveolate diversity and cell megaevolution: interplay of membranes, genomes and cytoskeleton. , 2004 .
[13] P. Kugrens,et al. Cryptomonads from the Salton Sea, California , 2002, Hydrobiologia.
[14] J. Palmer,et al. An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters , 2006, BMC Biology.
[15] A. Simpson,et al. Evolutionary relationships of apusomonads inferred from taxon-rich analyses of 6 nuclear encoded genes. , 2006, Molecular biology and evolution.
[16] David E. Richardson,et al. OnlineOpen: This , 2006 .
[17] Michael P. Cummings,et al. PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)] , 2004 .
[18] Kazutaka Katoh,et al. Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework , 2008, BMC Bioinformatics.
[19] T. A. Hall,et al. BIOEDIT: A USER-FRIENDLY BIOLOGICAL SEQUENCE ALIGNMENT EDITOR AND ANALYSIS PROGRAM FOR WINDOWS 95/98/ NT , 1999 .
[20] N. Okamoto,et al. The katablepharids are a distant sister group of the Cryptophyta: A proposal for Katablepharidophyta divisio nova/ Kathablepharida phylum novum based on SSU rDNA and beta-tubulin phylogeny. , 2005, Protist.
[21] Hidetoshi Shimodaira. An approximately unbiased test of phylogenetic tree selection. , 2002, Systematic biology.
[22] D. Bhattacharya,et al. Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of rhizaria with chromalveolates. , 2007, Molecular biology and evolution.
[23] D. Vaulot,et al. Picobiliphytes: A Marine Picoplanktonic Algal Group with Unknown Affinities to Other Eukaryotes , 2007, Science.
[24] P. Kugrens,et al. ULTRASTRUCTURAL VARIATIONS IN CRYPTOMONAD FLAGELLA 1 , 1987 .
[25] D. Vaulot,et al. The diversity of small eukaryotic phytoplankton (< or =3 microm) in marine ecosystems. , 2008, FEMS microbiology reviews.
[26] N. Vørs. Ultrastructure and autecology of the marine, heterotrophic flagellate Leucocryptos marina (Braarud) Butcher 1967 (Katablepharidaceae/Kathablepharidae), with a discussion of the genera Leucocryptos and Katablepharis/Kathablepharis. , 1992, European journal of protistology.
[27] N. Okamoto,et al. A Secondary Symbiosis in Progress? , 2005, Science.
[28] Kazutaka Katoh,et al. Recent developments in the MAFFT multiple sequence alignment program , 2008, Briefings Bioinform..
[29] D. Swofford. PAUP*: Phylogenetic analysis using parsimony (*and other methods), Version 4.0b10 , 2002 .
[30] M. L. Teles-Grilo,et al. Is there a plastid in Perkinsus atlanticus (Phylum Perkinsozoa)? , 2007, European journal of protistology.
[31] C. Slamovits,et al. Plastid-derived genes in the nonphotosynthetic alveolate Oxyrrhis marina. , 2008, Molecular biology and evolution.
[32] D. Bhattacharya,et al. Multiple Genes of Apparent Algal Origin Suggest Ciliates May Once Have Been Photosynthetic , 2008, Current Biology.
[33] Y. Inagaki,et al. Large-Scale Phylogenomic Analyses Reveal That Two Enigmatic Protist Lineages, Telonemia and Centroheliozoa, Are Related to Photosynthetic Chromalveolates , 2009, Genome biology and evolution.
[34] Fabien Burki,et al. Phylogenomics reveals a new ‘megagroup’ including most photosynthetic eukaryotes , 2008, Biology Letters.
[35] Kamran Shalchian-Tabrizi,et al. Phylogenomics Reshuffles the Eukaryotic Supergroups , 2007, PloS one.
[36] B Franz Lang,et al. The tree of eukaryotes. , 2005, Trends in ecology & evolution.
[37] Ansgar Gruber,et al. Der1-mediated preprotein import into the periplastid compartment of chromalveolates? , 2007, Molecular biology and evolution.
[38] D. Vaulot,et al. Telonemia, a new protist phylum with affinity to chromist lineages , 2006, Proceedings of the Royal Society B: Biological Sciences.
[39] John P. Huelsenbeck,et al. MrBayes 3: Bayesian phylogenetic inference under mixed models , 2003, Bioinform..
[40] Fabrice Not,et al. Vertical distribution of picoeukaryotic diversity in the Sargasso Sea. , 2007, Environmental microbiology.
[41] David J. Patterson,et al. Some flagellates (Protista) from tropical marine sediments , 1990 .
[42] Alexandros Stamatakis,et al. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models , 2006, Bioinform..
[43] D. Moreira,et al. Present status of the molecular ecology of kathablepharids. , 2006, Protist.
[44] D. Swofford,et al. The Phylogenetic Handbook: Phylogeny inference based on parsimony and other methods using PAUP , 2009 .
[45] E. Braun,et al. PHYLOGENOMICS AND SECONDARY PLASTIDS: A LOOK BACK AND A LOOK AHEAD 1 , 2008, Journal of phycology.
[46] L. Hug,et al. Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic “supergroups” , 2009, Proceedings of the National Academy of Sciences.
[47] K. Jakobsen,et al. Telonema antarcticum sp. nov., a common marine phagotrophic flagellate. , 2005, International journal of systematic and evolutionary microbiology.
[48] M. Sleigh,et al. The Quantitative Occurrence of Different Taxa of Heterotrophic Flagellates in Southampton Water, U.K. , 2000 .
[49] P. Keeling,et al. Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids. , 2003, Molecular biology and evolution.
[50] Robert P. Hirt,et al. Organelles, Genomes and Eukaryote Phylogeny : An Evolutionary Synthesis in the Age of Genomics , 2004 .
[51] L. Katz,et al. BMC Evolutionary Biology BioMed Central Research article Broadly sampled multigene trees of eukaryotes , 2008 .
[52] Masami Hasegawa,et al. CONSEL: for assessing the confidence of phylogenetic tree selection , 2001, Bioinform..
[53] B. Leander,et al. Dinoflagellate, Euglenid, or Cercomonad? The Ultrastructure and Molecular Phylogenetic Position of Protaspis grandis n. sp. , 2006, The Journal of eukaryotic microbiology.
[54] D. Patterson,et al. Heterotrophic flagellates (Protista) from marine sediments of Botany Bay, Australia , 2000 .
[55] P. Kugrens,et al. FEEDING APPARATUS OF THE COLORLESS FLAGELLATE KATABLEPHARIS (CRYPTOPHYCEAE) 1 , 1991 .
[56] P. Keeling,et al. On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes. , 2005, International journal of systematic and evolutionary microbiology.
[57] P. Kugrens,et al. Systematics of the enigmatic kathablepharids, including EM characterization of the type species, Kathablepharis phoenikoston, and new observations on K. remigera comb.nov. , 1999, Protist.
[58] K. Jakobsen,et al. Analysis of environmental 18S ribosomal RNA sequences reveals unknown diversity of the cosmopolitan phylum Telonemia. , 2007, Protist.