Nuclear genetic regulation of the human mitochondrial transcriptome
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[1] A. Battle,et al. False positives in trans-eQTL and co-expression analyses arising from RNA-sequencing alignment errors. , 2018, F1000Research.
[2] D. Mishmar,et al. Human primitive brain displays negative mitochondrial-nuclear expression correlation of respiratory genes , 2018, Genome research.
[3] C. A. Glastonbury,et al. Cell-Type Heterogeneity in Adipose Tissue Is Associated with Complex Traits and Reveals Disease-Relevant Cell-Specific eQTLs , 2018, bioRxiv.
[4] Dmitri D. Pervouchine,et al. The effects of death and post-mortem cold ischemia on human tissue transcriptomes , 2018, Nature Communications.
[5] M. Picardo,et al. Energetic mitochondrial failing in vitiligo and possible rescue by cardiolipin , 2017, Scientific Reports.
[6] Nicola J. Rinaldi,et al. Genetic effects on gene expression across human tissues , 2017, Nature.
[7] Y. Idaghdour,et al. Integrated genomic analysis of mitochondrial RNA processing in human cancers , 2017, Genome Medicine.
[8] Alexis A. Jourdain,et al. FASTKD1 and FASTKD4 have opposite effects on expression of specific mitochondrial RNAs, depending upon their endonuclease-like RAP domain , 2017, Nucleic acids research.
[9] P. Visscher,et al. Evidence for mitochondrial genetic control of autosomal gene expression. , 2016, Human molecular genetics.
[10] S. Retta,et al. Oxidative stress and inflammation in cerebral cavernous malformation disease pathogenesis: Two sides of the same coin , 2016, The international journal of biochemistry & cell biology.
[11] D. Mishmar,et al. Ancient Out-of-Africa Mitochondrial DNA Variants Associate with Distinct Mitochondrial Gene Expression Patterns , 2016, PLoS genetics.
[12] Y. Idaghdour,et al. Integrated genomic analysis of mitochondrial RNA processing in human cancers , 2016, bioRxiv.
[13] Jo Lambert,et al. Genome-wide association studies of autoimmune vitiligo identify 23 new risk loci and highlight key pathways and regulatory variants , 2016, Nature Genetics.
[14] Xiaofeng Zhu,et al. The genetics of blood pressure regulation and its target organs from association studies in 342,415 individuals , 2016, Nature Genetics.
[15] S. Dikalov,et al. Contribution of mitochondrial oxidative stress to hypertension , 2016, Current opinion in nephrology and hypertension.
[16] M. Stoneking,et al. Age-Related and Heteroplasmy-Related Variation in Human mtDNA Copy Number , 2016, bioRxiv.
[17] Karl R. Clauser,et al. MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins , 2015, Nucleic Acids Res..
[18] Alan J. Robinson,et al. MitoMiner v3.1, an update on the mitochondrial proteomics database , 2015, Nucleic Acids Res..
[19] Emmanouil T. Dermitzakis,et al. Fast and efficient QTL mapper for thousands of molecular phenotypes , 2015, bioRxiv.
[20] Kristin Reiche,et al. Dissecting the genetics of the human transcriptome identifies novel trait-related trans-eQTLs and corroborates the regulatory relevance of non-protein coding loci† , 2015, Human molecular genetics.
[21] Michael Q. Zhang,et al. Integrative analysis of 111 reference human epigenomes , 2015, Nature.
[22] Richard Durbin,et al. Gene-gene and gene-environment interactions detected by transcriptome sequence analysis in twins , 2014, Nature Genetics.
[23] Paul Theodor Pyl,et al. HTSeq – A Python framework to work with high-throughput sequencing data , 2014, bioRxiv.
[24] V. Mootha,et al. Functional genomic analysis of human mitochondrial RNA processing. , 2014, Cell reports.
[25] P. Chinnery,et al. Recent Mitochondrial DNA Mutations Increase the Risk of Developing Common Late-Onset Human Diseases , 2014, PLoS genetics.
[26] Alan Hodgkinson,et al. High-Resolution Genomic Analysis of Human Mitochondrial RNA Sequence Variation , 2014, Science.
[27] Ence Yang,et al. Population-level expression variability of mitochondrial DNA-encoded genes in humans , 2014, European Journal of Human Genetics.
[28] Rui Mei,et al. Type I interferon signaling genes in recurrent major depression: increased expression detected by whole-blood RNA sequencing , 2013, Molecular Psychiatry.
[29] Catherine Boileau,et al. Cohort profile of the CARTaGENE study: Quebec's population-based biobank for public health and personalized genomics. , 2013, International journal of epidemiology.
[30] A. Suomalainen,et al. Tissue- and cell-type–specific manifestations of heteroplasmic mtDNA 3243A>G mutation in human induced pluripotent stem cell-derived disease model , 2013, Proceedings of the National Academy of Sciences.
[31] Pedro G. Ferreira,et al. Transcriptome and genome sequencing uncovers functional variation in humans , 2013, Nature.
[32] D. Koller,et al. Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals , 2013, Genome research.
[33] Kenny Q. Ye,et al. An integrated map of genetic variation from 1,092 human genomes , 2012, Nature.
[34] T. Mercer,et al. The human mitochondrial transcriptome and the RNA‐binding proteins that regulate its expression , 2012, Wiley interdisciplinary reviews. RNA.
[35] M. Stephens,et al. Genome-wide Efficient Mixed Model Analysis for Association Studies , 2012, Nature Genetics.
[36] C. Barnes,et al. Genome-Wide Screen for Metabolic Syndrome Susceptibility Loci Reveals Strong Lipid Gene Contribution But No Evidence for Common Genetic Basis for Clustering of Metabolic Syndrome Traits , 2012, Circulation. Cardiovascular genetics.
[37] J. Nunnari,et al. Mitochondria: In Sickness and in Health , 2012, Cell.
[38] J. Mattick,et al. Long noncoding RNAs are generated from the mitochondrial genome and regulated by nuclear-encoded proteins. , 2011, RNA.
[39] Marcella Attimonelli,et al. The reference human nuclear mitochondrial sequences compilation validated and implemented on the UCSC genome browser , 2011, BMC Genomics.
[40] J. Mattick,et al. RNA processing in human mitochondria , 2011, Cell cycle.
[41] Tim R. Mercer,et al. The Human Mitochondrial Transcriptome , 2011, Cell.
[42] Christopher D. Brown,et al. Identification, Replication, and Functional Fine-Mapping of Expression Quantitative Trait Loci in Primary Human Liver Tissue , 2011, PLoS genetics.
[43] E. Shoubridge,et al. Gimap3 Regulates Tissue-Specific Mitochondrial DNA Segregation , 2010, PLoS genetics.
[44] Leopold Parts,et al. A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies , 2010, PLoS Comput. Biol..
[45] E. Shoubridge,et al. LRPPRC and SLIRP Interact in a Ribonucleoprotein Complex That Regulates Posttranscriptional Gene Expression in Mitochondria , 2010, Molecular biology of the cell.
[46] N. Cox,et al. Trait-Associated SNPs Are More Likely to Be eQTLs: Annotation to Enhance Discovery from GWAS , 2010, PLoS genetics.
[47] D. Dressman,et al. Heteroplasmic mitochondrial DNA mutations in normal and tumor cells , 2010, Nature.
[48] P. Donnelly,et al. A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies , 2009, PLoS genetics.
[49] Xia Yang,et al. Validation of Candidate Causal Genes for Abdominal Obesity Which Affect Shared Metabolic Pathways and Networks , 2009, Nature Genetics.
[50] Cole Trapnell,et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome , 2009, Genome Biology.
[51] K. Bennett,et al. RNase P without RNA: Identification and Functional Reconstitution of the Human Mitochondrial tRNA Processing Enzyme , 2008, Cell.
[52] Manuel A. R. Ferreira,et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. , 2007, American journal of human genetics.
[53] Paul F Agris,et al. tRNA's wobble decoding of the genome: 40 years of modification. , 2007, Journal of molecular biology.
[54] E. Rugarli,et al. Variable and Tissue-Specific Subunit Composition of Mitochondrial m-AAA Protease Complexes Linked to Hereditary Spastic Paraplegia , 2006, Molecular and Cellular Biology.
[55] Robert W. Taylor,et al. Mitochondrial DNA mutations in human disease , 2005, Nature Reviews Genetics.
[56] C. Ackerley,et al. The role of the LRPPRC (leucine-rich pentatricopeptide repeat cassette) gene in cytochrome oxidase assembly: mutation causes lowered levels of COX (cytochrome c oxidase) I and COX III mRNA. , 2004, The Biochemical journal.
[57] Marjan S. Bolouri,et al. Integrated Analysis of Protein Composition, Tissue Diversity, and Gene Regulation in Mouse Mitochondria , 2003, Cell.
[58] R Giegé,et al. A Watson-Crick base-pair-disrupting methyl group (m1A9) is sufficient for cloverleaf folding of human mitochondrial tRNALys. , 1999, Biochemistry.
[59] Richard Giegé,et al. The presence of modified nucleotides is required for cloverleaf folding of a human mitochondrial tRNA. , 1998, Nucleic acids research.
[60] Julio Montoya,et al. tRNA punctuation model of RNA processing in human mitochondria , 1981, Nature.
[61] J. Pohjoismäki,et al. Tissue specific differences in mitochondrial DNA maintenance and expression. , 2019, Mitochondrion.
[62] R. Durbin,et al. Gene-gene and gene-environment interactions detected by transcriptome sequence analysis , 2017 .
[63] R. Kurokawa,et al. Long Noncoding RNAs , 2015, Springer Japan.
[64] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..
[65] O. Delaneau,et al. Supplementary Information for ‘ Improved whole chromosome phasing for disease and population genetic studies ’ , 2012 .
[66] Pak Chung Sham,et al. Genetic Power Calculator: design of linkage and association genetic mapping studies of complex traits , 2003, Bioinform..