The application of FAST-NMR for the identification of novel drug discovery targets.
暂无分享,去创建一个
[1] C. Tucker. High-throughput cell-based assays in yeast. , 2002, Drug discovery today.
[2] F. Peterson,et al. Insight into the mechanism of serpin-proteinase inhibition from 2D [1H-15N] NMR studies of the 69 kDa alpha 1-proteinase inhibitor Pittsburgh-trypsin covalent complex. , 2001, Biochemistry.
[3] L. Lian,et al. Labeling Approaches for Protein Structural Studies by Solution‐State and Solid‐State NMR , 2002 .
[4] Stefan Wiemann,et al. High-throughput protein analysis integrating bioinformatics and experimental assays. , 2004, Nucleic acids research.
[5] S. Ekins. Predicting undesirable drug interactions with promiscuous proteins in silico. , 2004, Drug discovery today.
[6] Cheryl H Arrowsmith,et al. NMR and X-ray crystallography, complementary tools in structural proteomics of small proteins. , 2005, Journal of the American Chemical Society.
[7] Geoffrey J. Barton,et al. Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation , 1993, Comput. Appl. Biosci..
[8] Adam Godzik,et al. JAFA: a protein function annotation meta-server , 2006, Nucleic Acids Res..
[9] Mark Gerstein,et al. The protein target list of the Northeast Structural Genomics Consortium , 2004, Proteins.
[10] James M Aramini,et al. Comparisons of NMR spectral quality and success in crystallization demonstrate that NMR and X-ray crystallography are complementary methods for small protein structure determination. , 2005, Journal of the American Chemical Society.
[11] Dariusz Plewczynski,et al. PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics , 2006, BMC Bioinformatics.
[12] David S. Goodsell,et al. Automated docking using a Lamarckian genetic algorithm and an empirical binding free energy function , 1998, J. Comput. Chem..
[13] P. Kennelly,et al. Fancy meeting you here! A fresh look at "prokaryotic" protein phosphorylation , 1996, Journal of bacteriology.
[14] Christophe Combet,et al. The SuMo server: 3D search for protein functional sites , 2005, Bioinform..
[15] Lisa Yan,et al. Target validation through high throughput proteomics analysis , 2003 .
[16] Janet M. Thornton,et al. ProFunc: a server for predicting protein function from 3D structure , 2005, Nucleic Acids Res..
[17] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[18] Stephen K. Burley,et al. An overview of structural genomics , 2000, Nature Structural Biology.
[19] E. Lattman,et al. The state of the Protein Structure Initiative , 2004, Proteins.
[20] J. Frazzon,et al. Iron-Sulfur Cluster Assembly , 2004, Journal of Biological Chemistry.
[21] L. Kay,et al. The use of 2H, 13C, 15N multidimensional NMR to study the structure and dynamics of proteins. , 1998, Annual review of biophysics and biomolecular structure.
[22] Tony Pawson,et al. Structure and function of SH2 domains , 1994, Journal of Cell Science.
[23] Pedro Alexandrino Fernandes,et al. Protein–ligand docking: Current status and future challenges , 2006, Proteins.
[24] Jean-Michel Claverie,et al. FusionDB: a database for in-depth analysis of prokaryotic gene fusion events , 2004, Nucleic Acids Res..
[25] R. Greaves,et al. Active site identification through geometry-based and sequence profile-based calculations: burial of catalytic clefts. , 2005, Journal of molecular biology.
[26] First structural glimpse at a bacterial Ser/Thr protein phosphatase. , 2004, Structure.
[27] M. Inouye,et al. Domain arrangement of Der, a switch protein containing two GTPase domains. , 2002, Structure.
[28] Stephen K. Burley,et al. New York-Structural GenomiX Research Consortium (NYSGXRC): A Large Scale Center for the Protein Structure Initiative , 2005, Journal of Structural and Functional Genomics.
[29] R. Powers,et al. Comparison of protein active site structures for functional annotation of proteins and drug design , 2006, Proteins.
[30] Y. Z. Chen,et al. Therapeutic Targets: Progress of Their Exploration and Investigation of Their Characteristics , 2006, Pharmacological Reviews.
[31] Kengo Kinoshita,et al. eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape , 2007, Nucleic Acids Res..
[32] T. Joshi,et al. Genome-scale gene function prediction using multiple sources of high-throughput data in yeast Saccharomyces cerevisiae. , 2004, Omics : a journal of integrative biology.
[33] J. Schrenzel,et al. A randomized clinical trial to compare fleroxacin-rifampicin with flucloxacillin or vancomycin for the treatment of staphylococcal infection. , 2004, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[34] J. Prestegard,et al. Rapid analysis of large protein-protein complexes using NMR-derived orientational constraints: the 95 kDa complex of LpxA with acyl carrier protein. , 2004, Journal of molecular biology.
[35] Robert Powers,et al. FAST-NMR: functional annotation screening technology using NMR spectroscopy. , 2006, Journal of the American Chemical Society.
[36] L. Kay,et al. Four-dimensional NMR spectroscopy of a 723-residue protein: chemical shift assignments and secondary structure of malate synthase g. , 2002, Journal of the American Chemical Society.
[37] G. Wagner,et al. NMR spectroscopy: a multifaceted approach to macromolecular structure , 2000, Quarterly Reviews of Biophysics.
[38] M. Sternberg,et al. Prediction of protein secondary structure and active sites using the alignment of homologous sequences. , 1987, Journal of molecular biology.
[39] R. Elferink. One step further towards real high-throughput functional genomics , 2003 .
[40] K. Kang,et al. Gene knockdown by large circular antisense for high-throughput functional genomics , 2005, Nature Biotechnology.
[41] S. J. Campbell,et al. Ligand binding: functional site location, similarity and docking. , 2003, Current opinion in structural biology.
[42] J. Thornton,et al. Predicting protein function from sequence and structural data. , 2005, Current opinion in structural biology.
[43] Nikos Kyrpides,et al. Genomes OnLine Database (GOLD): a monitor of genome projects world-wide , 2001, Nucleic Acids Res..
[44] Michael Lappe,et al. A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3 , 2001, Nucleic Acids Res..
[45] Yilin Hu,et al. Formation and Insertion of the Nitrogenase Iron-Molybdenum Cofactor , 2004 .
[46] Krister Wennerberg,et al. The Ras superfamily at a glance , 2005, Journal of Cell Science.
[47] J. Frazzon,et al. Formation of iron-sulfur clusters in bacteria: an emerging field in bioinorganic chemistry. , 2003, Current opinion in chemical biology.
[48] Walid A Houry,et al. Quantitative NMR spectroscopy of supramolecular complexes: dynamic side pores in ClpP are important for product release. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[49] H. Kubinyi. Drug research: myths, hype and reality , 2003, Nature Reviews Drug Discovery.
[50] A Bateman,et al. Searching databases to find protein domain organization. , 2000, Advances in protein chemistry.
[51] B. Kullberg,et al. Guidelines for the prevention of antimicrobial resistance in hospitals. , 1998, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[52] Russell L. Marsden,et al. Progress of structural genomics initiatives: an analysis of solved target structures. , 2005, Journal of molecular biology.
[53] L. Kay,et al. Quantitative 13C and 2H NMR relaxation studies of the 723-residue enzyme malate synthase G reveal a dynamic binding interface. , 2005, Biochemistry.
[54] R. Zhao,et al. Biochemical characterization of the ATPase and helicase activity of UAP56, an essential pre-mRNA splicing and mRNA export factor. , 2010, The Journal of Biological Chemistry.
[55] Letter to the Editor: TROSY-driven NMR backbone assignments of the 381-residue nucleotide-binding domain of the Thermus Thermophilus DnaK molecular chaperone , 2004, Journal of biomolecular NMR.
[56] M. Sioud. Main approaches to target discovery and validation. , 2007, Methods in molecular biology.
[57] Letter to the Editor: Backbone Resonance Assignments of the 45.3 kDa Catalytic Domain of Human BACE1 , 2004, Journal of biomolecular NMR.
[58] Timothy B. Stockwell,et al. The Sequence of the Human Genome , 2001, Science.
[59] J. Agar,et al. Characterization of the NifU and NifS Fe-S cluster formation proteins essential for viability in Helicobacter pylori. , 2000, Biochemistry.
[60] Robert Powers,et al. Determining the optimal size of small molecule mixtures for high throughput NMR screening , 2005, Journal of biomolecular NMR.
[61] L. Lian,et al. Labelling approaches for protein structural studies by solution-state and solid-state NMR , 2001 .
[62] B. Rost. Enzyme function less conserved than anticipated. , 2002, Journal of molecular biology.
[63] L. Kay. The Development of NMR Methods to Study Protein Structure and Dynamics , 1998 .
[64] R. Xu,et al. Crystal structure of the human ATP-dependent splicing and export factor UAP56. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[65] D. Mccormick. Sequence the Human Genome , 1986, Bio/Technology.
[66] R. Riek,et al. TROSY and CRINEPT: NMR with large molecular and supramolecular structures in solution. , 2000, Trends in biochemical sciences.
[67] Hwangseo Park,et al. Critical assessment of the automated AutoDock as a new docking tool for virtual screening , 2006, Proteins.
[68] R. Powers,et al. Design and characterization of a functional library for NMR screening against novel protein targets. , 2006, Combinatorial chemistry & high throughput screening.
[69] A. Valencia,et al. Intrinsic errors in genome annotation. , 2001, Trends in genetics : TIG.